{"id":"https://openalex.org/W2982420272","doi":"https://doi.org/10.1093/nar/gkz945","title":"ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments","display_name":"ReMap 2020: a database of regulatory regions from an integrative analysis of Human and Arabidopsis DNA-binding sequencing experiments","publication_year":2019,"publication_date":"2019-10-09","ids":{"openalex":"https://openalex.org/W2982420272","doi":"https://doi.org/10.1093/nar/gkz945","mag":"2982420272","pmid":"https://pubmed.ncbi.nlm.nih.gov/31665499"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkz945","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz945","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D180/31697722/gkz945.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/48/D1/D180/31697722/gkz945.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024452570","display_name":"Jeanne Ch\u00e8neby","orcid":"https://orcid.org/0000-0003-4553-3110"},"institutions":[{"id":"https://openalex.org/I4210112918","display_name":"Theories and Approaches of Genomic Complexity","ror":"https://ror.org/025sfbe73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jeanne Ch\u00e8neby","raw_affiliation_strings":["Aix Marseille Univ, INSERM, TAGC, Marseille, France","TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)"],"affiliations":[{"raw_affiliation_string":"Aix Marseille Univ, INSERM, TAGC, Marseille, France","institution_ids":["https://openalex.org/I21491767","https://openalex.org/I154526488"]},{"raw_affiliation_string":"TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)","institution_ids":["https://openalex.org/I4210112918"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081681231","display_name":"Zacharie M\u00e9n\u00e9trier","orcid":null},"institutions":[{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210112918","display_name":"Theories and Approaches of Genomic Complexity","ror":"https://ror.org/025sfbe73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Zacharie M\u00e9n\u00e9trier","raw_affiliation_strings":["Aix Marseille Univ, INSERM, TAGC, Marseille, France","TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)"],"affiliations":[{"raw_affiliation_string":"Aix Marseille Univ, INSERM, TAGC, Marseille, France","institution_ids":["https://openalex.org/I21491767","https://openalex.org/I154526488"]},{"raw_affiliation_string":"TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)","institution_ids":["https://openalex.org/I4210112918"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013689790","display_name":"Martin Mestdagh","orcid":"https://orcid.org/0000-0001-7558-8628"},"institutions":[{"id":"https://openalex.org/I4210112918","display_name":"Theories and Approaches of Genomic Complexity","ror":"https://ror.org/025sfbe73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Martin Mestdagh","raw_affiliation_strings":["Aix Marseille Univ, INSERM, TAGC, Marseille, France","TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)"],"affiliations":[{"raw_affiliation_string":"Aix Marseille Univ, INSERM, TAGC, Marseille, France","institution_ids":["https://openalex.org/I21491767","https://openalex.org/I154526488"]},{"raw_affiliation_string":"TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)","institution_ids":["https://openalex.org/I4210112918"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076006657","display_name":"Thomas Rosnet","orcid":"https://orcid.org/0000-0003-0676-5461"},"institutions":[{"id":"https://openalex.org/I4210112918","display_name":"Theories and Approaches of Genomic Complexity","ror":"https://ror.org/025sfbe73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Thomas Rosnet","raw_affiliation_strings":["Aix Marseille Univ, INSERM, TAGC, Marseille, France","TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)"],"affiliations":[{"raw_affiliation_string":"Aix Marseille Univ, INSERM, TAGC, Marseille, France","institution_ids":["https://openalex.org/I21491767","https://openalex.org/I154526488"]},{"raw_affiliation_string":"TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)","institution_ids":["https://openalex.org/I4210112918"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067191764","display_name":"Allyssa Douida","orcid":null},"institutions":[{"id":"https://openalex.org/I4210112918","display_name":"Theories and Approaches of Genomic Complexity","ror":"https://ror.org/025sfbe73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Allyssa Douida","raw_affiliation_strings":["Aix Marseille Univ, INSERM, TAGC, Marseille, France","TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)"],"affiliations":[{"raw_affiliation_string":"Aix Marseille Univ, INSERM, TAGC, Marseille, France","institution_ids":["https://openalex.org/I21491767","https://openalex.org/I154526488"]},{"raw_affiliation_string":"TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)","institution_ids":["https://openalex.org/I4210112918"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074080986","display_name":"Wassim Rhalloussi","orcid":"https://orcid.org/0000-0002-1258-2306"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210112918","display_name":"Theories and Approaches of Genomic Complexity","ror":"https://ror.org/025sfbe73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Wassim Rhalloussi","raw_affiliation_strings":["Aix Marseille Univ, INSERM, TAGC, Marseille, France","TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)"],"affiliations":[{"raw_affiliation_string":"Aix Marseille Univ, INSERM, TAGC, Marseille, France","institution_ids":["https://openalex.org/I21491767","https://openalex.org/I154526488"]},{"raw_affiliation_string":"TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)","institution_ids":["https://openalex.org/I4210112918"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075787276","display_name":"Aur\u00e9lie Bergon","orcid":"https://orcid.org/0000-0003-1518-4562"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210112918","display_name":"Theories and Approaches of Genomic Complexity","ror":"https://ror.org/025sfbe73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Aur\u00e9lie Bergon","raw_affiliation_strings":["Aix Marseille Univ, INSERM, TAGC, Marseille, France","TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)"],"affiliations":[{"raw_affiliation_string":"Aix Marseille Univ, INSERM, TAGC, Marseille, France","institution_ids":["https://openalex.org/I21491767","https://openalex.org/I154526488"]},{"raw_affiliation_string":"TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)","institution_ids":["https://openalex.org/I4210112918"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088269508","display_name":"Fabrice Lopez","orcid":"https://orcid.org/0000-0002-2401-0292"},"institutions":[{"id":"https://openalex.org/I4210112918","display_name":"Theories and Approaches of Genomic Complexity","ror":"https://ror.org/025sfbe73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fabrice Lopez","raw_affiliation_strings":["Aix Marseille Univ, INSERM, TAGC, Marseille, France","TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)"],"affiliations":[{"raw_affiliation_string":"Aix Marseille Univ, INSERM, TAGC, Marseille, France","institution_ids":["https://openalex.org/I21491767","https://openalex.org/I154526488"]},{"raw_affiliation_string":"TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)","institution_ids":["https://openalex.org/I4210112918"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061967401","display_name":"Beno\u00eet Ballester","orcid":"https://orcid.org/0000-0002-0834-7135"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210112918","display_name":"Theories and Approaches of Genomic Complexity","ror":"https://ror.org/025sfbe73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Benoit Ballester","raw_affiliation_strings":["Aix Marseille Univ, INSERM, TAGC, Marseille, France","TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)"],"affiliations":[{"raw_affiliation_string":"Aix Marseille Univ, INSERM, TAGC, Marseille, France","institution_ids":["https://openalex.org/I21491767","https://openalex.org/I154526488"]},{"raw_affiliation_string":"TAGC - Theories and Approaches of Genomic Complexity (Parc scientifique de Luminy - 163 avenue de Luminy 13288 Marseille cedex 9 - France)","institution_ids":["https://openalex.org/I4210112918"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5061967401"],"corresponding_institution_ids":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3200,"currency":"EUR","value_usd":3451},"fwci":9.2486,"has_fulltext":true,"cited_by_count":143,"citation_normalized_percentile":{"value":0.98700144,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"48","issue":"D1","first_page":"D180","last_page":"D188"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/arabidopsis","display_name":"Arabidopsis","score":0.8678802251815796},{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.8476693034172058},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6117706894874573},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5412511229515076},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.511235237121582},{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.47415584325790405},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4558504819869995},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3922281861305237},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3655124306678772},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3533545732498169},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26997584104537964},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.19212868809700012},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17891007661819458}],"concepts":[{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.8678802251815796},{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.8476693034172058},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6117706894874573},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5412511229515076},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.511235237121582},{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.47415584325790405},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4558504819869995},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3922281861305237},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3655124306678772},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3533545732498169},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26997584104537964},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.19212868809700012},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17891007661819458},{"id":"https://openalex.org/C55352822","wikidata":"https://www.wikidata.org/wiki/Q5558978","display_name":"Gibbs isotherm","level":3,"score":0.0},{"id":"https://openalex.org/C58226133","wikidata":"https://www.wikidata.org/wiki/Q1324199","display_name":"Pulmonary surfactant","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D042421","descriptor_name":"Histone Code","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D042421","descriptor_name":"Histone Code","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D042421","descriptor_name":"Histone Code","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkz945","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz945","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D180/31697722/gkz945.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:31665499","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31665499","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:HAL:hal-02351736v1","is_oa":false,"landing_page_url":"https://amu.hal.science/hal-02351736","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2020, &#x27E8;10.1093/nar/gkz945&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:7145625","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7145625","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkz945","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz945","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D180/31697722/gkz945.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"},{"score":0.4000000059604645,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G3335229504","display_name":null,"funder_award_id":"Avenir","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4423138545","display_name":null,"funder_award_id":"ANR-10-EQPX-29-0","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5043543010","display_name":null,"funder_award_id":"10-EQPX-29-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6656330354","display_name":null,"funder_award_id":"Fellowship","funder_id":"https://openalex.org/F4320320893","funder_display_name":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale"},{"id":"https://openalex.org/G676769616","display_name":null,"funder_award_id":"ANR-10-EQPX-29-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7240651115","display_name":null,"funder_award_id":"ANR-10","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8510727784","display_name":null,"funder_award_id":"ANR-10-EQPX","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G97595544","display_name":null,"funder_award_id":"(INSERM)","funder_id":"https://openalex.org/F4320320893","funder_display_name":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale"}],"funders":[{"id":"https://openalex.org/F4320309911","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320320893","display_name":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale","ror":"https://ror.org/02vjkv261"},{"id":"https://openalex.org/F4320322727","display_name":"Minist\u00e8re de l'Education Nationale, de l'Enseignement Superieur et de la Recherche","ror":"https://ror.org/03sjk9a61"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2982420272.pdf","grobid_xml":"https://content.openalex.org/works/W2982420272.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1989419347","https://openalex.org/W2024038403","https://openalex.org/W2076154138","https://openalex.org/W2096083625","https://openalex.org/W2108234281","https://openalex.org/W2109906618","https://openalex.org/W2118258530","https://openalex.org/W2124514674","https://openalex.org/W2126958666","https://openalex.org/W2129795133","https://openalex.org/W2136430672","https://openalex.org/W2136623765","https://openalex.org/W2147524392","https://openalex.org/W2170551349","https://openalex.org/W2171622167","https://openalex.org/W2171808845","https://openalex.org/W2259938310","https://openalex.org/W2304351606","https://openalex.org/W2737543579","https://openalex.org/W2766195206","https://openalex.org/W2767743008","https://openalex.org/W2767826728","https://openalex.org/W2805978167","https://openalex.org/W2898502596","https://openalex.org/W2899616402","https://openalex.org/W2915769855","https://openalex.org/W2988716798","https://openalex.org/W4237403594"],"related_works":["https://openalex.org/W1594012662","https://openalex.org/W2139297998","https://openalex.org/W3109437984","https://openalex.org/W2462807523","https://openalex.org/W2274932919","https://openalex.org/W2106134872","https://openalex.org/W2804921183","https://openalex.org/W4387264054","https://openalex.org/W2269421989","https://openalex.org/W3147624048"],"abstract_inverted_index":{"ReMap":[0,39,85],"(http://remap.univ-amu.fr)":[1],"aims":[2],"to":[3,170],"provide":[4],"the":[5,108,129,171],"largest":[6],"catalogs":[7,136],"of":[8,18,20,38,71,79,97,107,110,119,131],"high-quality":[9],"regulatory":[10,92],"regions":[11],"resulting":[12],"from":[13,25,58,128],"a":[14,69,77,95,105,117,154,177,182,188],"large-scale":[15],"integrative":[16],"analysis":[17,192],"hundreds":[19],"transcription":[21],"factors":[22],"and":[23,30,44,53,113,123,145],"regulators":[24,74],"DNA-binding":[26],"experiments":[27],"in":[28],"Human":[29],"Arabidopsis":[31,91,99],"(Arabidopsis":[32],"thaliana).":[33],"In":[34],"this":[35,150],"2020":[36],"update":[37,86,151],"we":[40],"have":[41],"collected,":[42],"analyzed":[43],"retained":[45],"after":[46],"quality":[47],"control":[48],"2764":[49],"new":[50,155,183],"human":[51,63],"ChIP-seq":[52,112,133],"208":[54],"ChIP-exo":[55],"datasets":[56,67],"available":[57,139,175],"public":[59],"sources.":[60],"The":[61],"updated":[62],"atlas":[64],"totalize":[65],"5798":[66],"covering":[68],"total":[70],"1135":[72],"transcriptional":[73],"(TRs)":[75],"with":[76,88,153,181],"catalog":[78,96,118],"165":[80],"million":[81],"(M)":[82],"peaks.":[83],"This":[84],"comes":[87,152],"two":[89],"unique":[90],"catalogs.":[93],"First,":[94],"372":[98],"TRs":[100,189],"across":[101,125],"2.6M":[102],"peaks":[103,127],"as":[104],"result":[106],"integration":[109,130],"509":[111],"DAP-seq":[114],"datasets.":[115,134],"Second,":[116],"33":[120],"histone":[121],"modifications":[122],"variants":[124],"4.5M":[126],"286":[132],"All":[135],"are":[137],"made":[138],"through":[140],"track":[141],"hubs":[142],"at":[143],"Ensembl":[144],"UCSC":[146],"Genome":[147],"Browsers.":[148],"Additionally,":[149],"web":[156],"framework":[157],"providing":[158],"an":[159],"interactive":[160],"user-interface,":[161],"including":[162],"improved":[163],"search":[164],"features.":[165],"Finally,":[166],"full":[167],"programmatically":[168],"access":[169],"underlying":[172],"data":[173],"is":[174],"using":[176],"RESTful":[178],"API":[179],"together":[180],"R":[184],"Shiny":[185],"interface":[186],"for":[187],"binding":[190],"enrichment":[191],"tool.":[193]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":45},{"year":2021,"cited_by_count":47},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":1}],"updated_date":"2026-03-14T08:43:22.919905","created_date":"2025-10-10T00:00:00"}
