{"id":"https://openalex.org/W2981780393","doi":"https://doi.org/10.1093/nar/gkz925","title":"AraPheno and the AraGWAS Catalog 2020: a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana","display_name":"AraPheno and the AraGWAS Catalog 2020: a major database update including RNA-Seq and knockout mutation data for Arabidopsis thaliana","publication_year":2019,"publication_date":"2019-10-08","ids":{"openalex":"https://openalex.org/W2981780393","doi":"https://doi.org/10.1093/nar/gkz925","mag":"2981780393","pmid":"https://pubmed.ncbi.nlm.nih.gov/31642487"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkz925","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz925","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D1063/31697948/gkz925.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/48/D1/D1063/31697948/gkz925.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056648635","display_name":"Matteo Togninalli","orcid":"https://orcid.org/0000-0001-6554-2167"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Matteo Togninalli","raw_affiliation_strings":["Machine Learning and Computational Biology Lab, Department of Biosystems Science and Engineering, ETH Z\u00fcrich, Basel, Switzerland","Swiss Institute of Bioinformatics, Basel, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Machine Learning and Computational Biology Lab, Department of Biosystems Science and Engineering, ETH Z\u00fcrich, Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Basel, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046117318","display_name":"\u00dcmit Seren","orcid":"https://orcid.org/0000-0003-4031-0428"},"institutions":[{"id":"https://openalex.org/I137696358","display_name":"Gregor Mendel Institute of Molecular Plant Biology","ror":"https://ror.org/05twjp994","country_code":"AT","type":"facility","lineage":["https://openalex.org/I137696358","https://openalex.org/I138211613","https://openalex.org/I4210142901"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"\u00dcmit Seren","raw_affiliation_strings":["Gregor Mendel Institute of Molecular Plant Biology, Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gregor Mendel Institute of Molecular Plant Biology, Vienna, Austria","institution_ids":["https://openalex.org/I137696358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003903441","display_name":"Jan A. Freudenthal","orcid":"https://orcid.org/0000-0001-5279-6168"},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jan A Freudenthal","raw_affiliation_strings":["Center for Computational and Theoretical Biology, University W\u00fcrzburg, W\u00fcrzburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational and Theoretical Biology, University W\u00fcrzburg, W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011144858","display_name":"J. Grey Monroe","orcid":"https://orcid.org/0000-0002-4025-5572"},"institutions":[{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"J Grey Monroe","raw_affiliation_strings":["Max Planck Institute for Developmental Biology, T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Developmental Biology, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210112458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111499571","display_name":"Dazhe Meng","orcid":null},"institutions":[{"id":"https://openalex.org/I1291425158","display_name":"Google (United States)","ror":"https://ror.org/00njsd438","country_code":"US","type":"company","lineage":["https://openalex.org/I1291425158","https://openalex.org/I4210128969"]},{"id":"https://openalex.org/I137696358","display_name":"Gregor Mendel Institute of Molecular Plant Biology","ror":"https://ror.org/05twjp994","country_code":"AT","type":"facility","lineage":["https://openalex.org/I137696358","https://openalex.org/I138211613","https://openalex.org/I4210142901"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Dazhe Meng","raw_affiliation_strings":["Google, Mountain View, USA","Gregor Mendel Institute of Molecular Plant Biology, Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Google, Mountain View, USA","institution_ids":["https://openalex.org/I1291425158"]},{"raw_affiliation_string":"Gregor Mendel Institute of Molecular Plant Biology, Vienna, Austria","institution_ids":["https://openalex.org/I137696358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001507986","display_name":"Magnus Nordborg","orcid":"https://orcid.org/0000-0001-7178-9748"},"institutions":[{"id":"https://openalex.org/I137696358","display_name":"Gregor Mendel Institute of Molecular Plant Biology","ror":"https://ror.org/05twjp994","country_code":"AT","type":"facility","lineage":["https://openalex.org/I137696358","https://openalex.org/I138211613","https://openalex.org/I4210142901"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Magnus Nordborg","raw_affiliation_strings":["Gregor Mendel Institute of Molecular Plant Biology, Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gregor Mendel Institute of Molecular Plant Biology, Vienna, Austria","institution_ids":["https://openalex.org/I137696358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003440649","display_name":"Detlef Weigel","orcid":"https://orcid.org/0000-0002-2114-7963"},"institutions":[{"id":"https://openalex.org/I4210112458","display_name":"Max Planck Institute for Developmental Biology","ror":"https://ror.org/022jc0g24","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210112458"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Detlef Weigel","raw_affiliation_strings":["Max Planck Institute for Developmental Biology, T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Developmental Biology, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210112458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074540538","display_name":"Karsten Borgwardt","orcid":"https://orcid.org/0000-0001-7221-2393"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Karsten Borgwardt","raw_affiliation_strings":["Machine Learning and Computational Biology Lab, Department of Biosystems Science and Engineering, ETH Z\u00fcrich, Basel, Switzerland","Swiss Institute of Bioinformatics, Basel, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Machine Learning and Computational Biology Lab, Department of Biosystems Science and Engineering, ETH Z\u00fcrich, Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Basel, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005640554","display_name":"Arthur Korte","orcid":"https://orcid.org/0000-0003-0831-1463"},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Arthur Korte","raw_affiliation_strings":["Center for Computational and Theoretical Biology, University W\u00fcrzburg, W\u00fcrzburg, Germany"],"raw_orcid":"https://orcid.org/0000-0003-0831-1463","affiliations":[{"raw_affiliation_string":"Center for Computational and Theoretical Biology, University W\u00fcrzburg, W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009539507","display_name":"Dominik G. Grimm","orcid":"https://orcid.org/0000-0003-2085-4591"},"institutions":[{"id":"https://openalex.org/I309496635","display_name":"Weihenstephan-Triesdorf University of Applied Sciences","ror":"https://ror.org/00gzkxz88","country_code":"DE","type":"education","lineage":["https://openalex.org/I309496635"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Dominik G Grimm","raw_affiliation_strings":["Technical University of Munich,\u00a0TUM Campus Straubing for Biotechnology and Sustainability, Bioinformatics, Straubing, Germany","Weihenstephan-Triesdorf University of Applied Sciences, Bioinformatics, Straubing, Germany"],"raw_orcid":"https://orcid.org/0000-0003-2085-4591","affiliations":[{"raw_affiliation_string":"Technical University of Munich,\u00a0TUM Campus Straubing for Biotechnology and Sustainability, Bioinformatics, Straubing, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Weihenstephan-Triesdorf University of Applied Sciences, Bioinformatics, Straubing, Germany","institution_ids":["https://openalex.org/I309496635"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5005640554","https://openalex.org/A5009539507"],"corresponding_institution_ids":["https://openalex.org/I25974101","https://openalex.org/I309496635","https://openalex.org/I62916508"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":1904,"currency":"EUR","value_usd":2053},"fwci":5.877,"has_fulltext":false,"cited_by_count":75,"citation_normalized_percentile":{"value":0.96540614,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"48","issue":"D1","first_page":"D1063","last_page":"D1068"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8301824331283569},{"id":"https://openalex.org/keywords/genome-wide-association-study","display_name":"Genome-wide association study","score":0.6154302954673767},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5785779356956482},{"id":"https://openalex.org/keywords/genetic-architecture","display_name":"Genetic architecture","score":0.48222410678863525},{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.4764269292354584},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.47354239225387573},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4728009104728699},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4695832133293152},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.4376530945301056},{"id":"https://openalex.org/keywords/quantitative-trait-locus","display_name":"Quantitative trait locus","score":0.41204833984375},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.33110857009887695},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.32361721992492676},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.25556427240371704}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8301824331283569},{"id":"https://openalex.org/C106208931","wikidata":"https://www.wikidata.org/wiki/Q1098876","display_name":"Genome-wide association study","level":5,"score":0.6154302954673767},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5785779356956482},{"id":"https://openalex.org/C9287583","wikidata":"https://www.wikidata.org/wiki/Q5532883","display_name":"Genetic architecture","level":4,"score":0.48222410678863525},{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.4764269292354584},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.47354239225387573},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4728009104728699},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4695832133293152},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.4376530945301056},{"id":"https://openalex.org/C81941488","wikidata":"https://www.wikidata.org/wiki/Q853421","display_name":"Quantitative trait locus","level":3,"score":0.41204833984375},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.33110857009887695},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.32361721992492676},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.25556427240371704},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009154","descriptor_name":"Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019655","descriptor_name":"Quantitative Trait, Heritable","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019655","descriptor_name":"Quantitative Trait, Heritable","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019655","descriptor_name":"Quantitative Trait, Heritable","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019655","descriptor_name":"Quantitative Trait, Heritable","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055786","descriptor_name":"Gene Knockout Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055786","descriptor_name":"Gene Knockout Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055786","descriptor_name":"Gene Knockout Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055786","descriptor_name":"Gene Knockout Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1093/nar/gkz925","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz925","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D1063/31697948/gkz925.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:31642487","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31642487","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:ark:/13030/qt5985d866","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt5985d866","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/5985d866","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, vol 48, iss D1","raw_type":"article"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1522160","is_oa":false,"landing_page_url":"https://mediatum.ub.tum.de/1522160","pdf_url":null,"source":{"id":"https://openalex.org/S4377196330","display_name":"mediaTUM  (Technical University of Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1543409","is_oa":true,"landing_page_url":"http://mediatum.ub.tum.de/node?id=1543409","pdf_url":null,"source":{"id":"https://openalex.org/S4306400453","display_name":"mediaTUM \u2013 the media and publications repository of the Technical University Munich (Technical University Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7145550","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7145550","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/390118","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/390118","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 48 (D1)","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.3929/ethz-b-000390118","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000390118","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/nar/gkz925","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz925","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D1063/31697948/gkz925.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7613577722","display_name":null,"funder_award_id":"1701918","funder_id":"https://openalex.org/F4320307381","funder_display_name":"National Sleep Foundation"}],"funders":[{"id":"https://openalex.org/F4320307381","display_name":"National Sleep Foundation","ror":"https://ror.org/00zc1hf95"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2981780393.pdf"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W191440605","https://openalex.org/W1919339363","https://openalex.org/W2022161986","https://openalex.org/W2035422475","https://openalex.org/W2066672169","https://openalex.org/W2082704080","https://openalex.org/W2097927039","https://openalex.org/W2137591958","https://openalex.org/W2137797806","https://openalex.org/W2139359390","https://openalex.org/W2142150916","https://openalex.org/W2142690132","https://openalex.org/W2153922240","https://openalex.org/W2181239459","https://openalex.org/W2419574648","https://openalex.org/W2462490406","https://openalex.org/W2530462717","https://openalex.org/W2534895556","https://openalex.org/W2561769852","https://openalex.org/W2565065834","https://openalex.org/W2619104761","https://openalex.org/W2745130936","https://openalex.org/W2749443590","https://openalex.org/W2766784689","https://openalex.org/W2767212984","https://openalex.org/W2795775004","https://openalex.org/W2898692123","https://openalex.org/W2901004011","https://openalex.org/W2901303766","https://openalex.org/W2902333569","https://openalex.org/W2903072828","https://openalex.org/W2911091572","https://openalex.org/W2934861239","https://openalex.org/W2948505285","https://openalex.org/W2949446837","https://openalex.org/W2949700784","https://openalex.org/W2949849645","https://openalex.org/W2966737796","https://openalex.org/W2969996045","https://openalex.org/W2970263563","https://openalex.org/W2975590425","https://openalex.org/W2987896002","https://openalex.org/W3105982350","https://openalex.org/W4296480564"],"related_works":["https://openalex.org/W2030319575","https://openalex.org/W2114021229","https://openalex.org/W2126831907","https://openalex.org/W2006250117","https://openalex.org/W2942336194","https://openalex.org/W4243834755","https://openalex.org/W2401648500","https://openalex.org/W2062376031","https://openalex.org/W2093896273","https://openalex.org/W2968015312"],"abstract_inverted_index":{"Genome-wide":[0],"association":[1],"studies":[2],"(GWAS)":[3],"are":[4,173],"integral":[5],"for":[6,39,57,103,148,155,160,171],"studying":[7],"genotype-phenotype":[8],"relationships":[9],"and":[10,30,37,47,54,97,125,135],"gaining":[11],"a":[12,77,92],"deeper":[13],"understanding":[14],"of":[15,24,51,69,80,100,118,150],"the":[16,40,48,67,87,115,166,177],"genetic":[17,25],"architecture":[18],"underlying":[19],"trait":[20],"variation.":[21],"A":[22],"plethora":[23],"associations":[26,102,132],"between":[27,133],"distinct":[28],"loci":[29],"various":[31],"traits":[32],"have":[33],"been":[34,142],"successfully":[35],"discovered":[36],"published":[38],"model":[41],"plant":[42],"Arabidopsis":[43],"thaliana.":[44],"This":[45],"success":[46],"free":[49],"availability":[50],"full":[52],"genomes":[53],"phenotypic":[55],"data":[56,71,147],"more":[58],"than":[59],"1,000":[60],"different":[61],"natural":[62],"inbred":[63],"lines":[64],"led":[65],"to":[66,144],"development":[68],"several":[70],"repositories.":[72],"AraPheno":[73,137,140],"(https://arapheno.1001genomes.org)":[74],"serves":[75],"as":[76],"central":[78],"repository":[79],"population-scale":[81],"phenotypes":[82,106],"in":[83],"A.":[84],"thaliana,":[85],"while":[86],"AraGWAS":[88],"Catalog":[89],"(https://aragwas.1001genomes.org)":[90],"provides":[91],"publicly":[93],"available,":[94],"manually":[95],"curated":[96],"standardized":[98],"collection":[99],"marker-trait":[101],"all":[104,136],"available":[105],"from":[107],"AraPheno.":[108],"In":[109],"this":[110],"major":[111],"update,":[112],"we":[113],"introduce":[114],"next":[116],"generation":[117],"both":[119],"platforms,":[120],"including":[121,165],"new":[122],"data,":[123,164],"features":[124],"tools.":[126],"We":[127],"included":[128],"novel":[129],"results":[130],"on":[131],"knockout-mutations":[134],"traits.":[138],"Furthermore,":[139],"has":[141],"extended":[143],"display":[145],"RNA-Seq":[146],"hundreds":[149],"accessions,":[151],"providing":[152],"expression":[153],"information":[154],"over":[156],"28":[157],"000":[158],"genes":[159],"these":[161],"accessions.":[162],"All":[163],"imputed":[167],"genotype":[168],"matrix":[169],"used":[170],"GWAS,":[172],"easily":[174],"downloadable":[175],"via":[176],"respective":[178],"databases.":[179]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":24},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
