{"id":"https://openalex.org/W2981711990","doi":"https://doi.org/10.1093/nar/gkz919","title":"SilkDB 3.0: visualizing and exploring multiple levels of data for silkworm","display_name":"SilkDB 3.0: visualizing and exploring multiple levels of data for silkworm","publication_year":2019,"publication_date":"2019-10-04","ids":{"openalex":"https://openalex.org/W2981711990","doi":"https://doi.org/10.1093/nar/gkz919","mag":"2981711990","pmid":"https://pubmed.ncbi.nlm.nih.gov/31642484"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkz919","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz919","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D749/31697591/gkz919.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/48/D1/D749/31697591/gkz919.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101995770","display_name":"Fang L\u00fc","orcid":"https://orcid.org/0000-0003-1247-1523"},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fang Lu","raw_affiliation_strings":["Biological Science Research Center, Southwest University, Chongqing 400715, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological Science Research Center, Southwest University, Chongqing 400715, China","institution_ids":["https://openalex.org/I142108993"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046194510","display_name":"Zhaoyuan Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhaoyuan Wei","raw_affiliation_strings":["Biological Science Research Center, Southwest University, Chongqing 400715, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological Science Research Center, Southwest University, Chongqing 400715, China","institution_ids":["https://openalex.org/I142108993"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015886876","display_name":"Yongjiang Luo","orcid":null},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongjiang Luo","raw_affiliation_strings":["Biological Science Research Center, Southwest University, Chongqing 400715, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological Science Research Center, Southwest University, Chongqing 400715, China","institution_ids":["https://openalex.org/I142108993"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101565455","display_name":"Hailong Guo","orcid":"https://orcid.org/0000-0003-2794-9534"},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hailong Guo","raw_affiliation_strings":["Biological Science Research Center, Southwest University, Chongqing 400715, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological Science Research Center, Southwest University, Chongqing 400715, China","institution_ids":["https://openalex.org/I142108993"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100419052","display_name":"Guoqing Zhang","orcid":"https://orcid.org/0000-0001-8827-7546"},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guoqing Zhang","raw_affiliation_strings":["Biological Science Research Center, Southwest University, Chongqing 400715, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological Science Research Center, Southwest University, Chongqing 400715, China","institution_ids":["https://openalex.org/I142108993"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041326706","display_name":"Qingyou Xia","orcid":"https://orcid.org/0000-0002-9263-2886"},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qingyou Xia","raw_affiliation_strings":["Biological Science Research Center, Southwest University, Chongqing 400715, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological Science Research Center, Southwest University, Chongqing 400715, China","institution_ids":["https://openalex.org/I142108993"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100630722","display_name":"Yi Wang","orcid":"https://orcid.org/0000-0002-4706-8171"},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yi Wang","raw_affiliation_strings":["Biological Science Research Center, Southwest University, Chongqing 400715, China"],"raw_orcid":"https://orcid.org/0000-0002-4706-8171","affiliations":[{"raw_affiliation_string":"Biological Science Research Center, Southwest University, Chongqing 400715, China","institution_ids":["https://openalex.org/I142108993"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5100630722"],"corresponding_institution_ids":["https://openalex.org/I142108993"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":11.8737,"has_fulltext":true,"cited_by_count":131,"citation_normalized_percentile":{"value":0.99188034,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"48","issue":"D1","first_page":"D749","last_page":"D755"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13220","display_name":"Plant and Fungal Interactions Research","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13220","display_name":"Plant and Fungal Interactions Research","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11966","display_name":"Silk-based biomaterials and applications","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/2502","display_name":"Biomaterials"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7773222923278809},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6846283674240112},{"id":"https://openalex.org/keywords/synteny","display_name":"Synteny","score":0.6202494502067566},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6009131073951721},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.566641092300415},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4933742582798004},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.47953033447265625},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4793032705783844},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4432024359703064},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.43456488847732544},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.33039334416389465},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.32985934615135193},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3189527690410614},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.22191563248634338},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.21413320302963257}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7773222923278809},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6846283674240112},{"id":"https://openalex.org/C53702515","wikidata":"https://www.wikidata.org/wiki/Q971246","display_name":"Synteny","level":4,"score":0.6202494502067566},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6009131073951721},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.566641092300415},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4933742582798004},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.47953033447265625},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4793032705783844},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4432024359703064},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.43456488847732544},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.33039334416389465},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.32985934615135193},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3189527690410614},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.22191563248634338},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.21413320302963257},{"id":"https://openalex.org/C58226133","wikidata":"https://www.wikidata.org/wiki/Q1324199","display_name":"Pulmonary surfactant","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C55352822","wikidata":"https://www.wikidata.org/wiki/Q5558978","display_name":"Gibbs isotherm","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005091","descriptor_name":"Exons","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012831","descriptor_name":"Bombyx","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012831","descriptor_name":"Bombyx","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012831","descriptor_name":"Bombyx","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049750","descriptor_name":"Genome, Insect","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049750","descriptor_name":"Genome, Insect","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049750","descriptor_name":"Genome, Insect","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkz919","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz919","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D749/31697591/gkz919.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:31642484","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31642484","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7145608","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7145608","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkz919","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz919","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D749/31697591/gkz919.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1672937154","display_name":null,"funder_award_id":"XDJK2019TJ003","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G6270568578","display_name":null,"funder_award_id":"XDJK2019TJ003","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8126236402","display_name":null,"funder_award_id":"31871330","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2981711990.pdf","grobid_xml":"https://content.openalex.org/works/W2981711990.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1484660603","https://openalex.org/W1803102843","https://openalex.org/W1999151221","https://openalex.org/W2007178799","https://openalex.org/W2025153546","https://openalex.org/W2036913140","https://openalex.org/W2102278945","https://openalex.org/W2103441770","https://openalex.org/W2106587213","https://openalex.org/W2107772251","https://openalex.org/W2108234281","https://openalex.org/W2108274915","https://openalex.org/W2123225648","https://openalex.org/W2134622113","https://openalex.org/W2141652419","https://openalex.org/W2144490750","https://openalex.org/W2145876138","https://openalex.org/W2150550043","https://openalex.org/W2157923275","https://openalex.org/W2160345222","https://openalex.org/W2162142896","https://openalex.org/W2167702845","https://openalex.org/W2168292723","https://openalex.org/W2169389191","https://openalex.org/W2185693210","https://openalex.org/W2336957559","https://openalex.org/W2481029670","https://openalex.org/W2519200480","https://openalex.org/W2531444860","https://openalex.org/W2537623931","https://openalex.org/W2559588208","https://openalex.org/W2604329751","https://openalex.org/W2746949165","https://openalex.org/W2794743136","https://openalex.org/W2810249326","https://openalex.org/W2888425844","https://openalex.org/W2898402099","https://openalex.org/W2905278757","https://openalex.org/W2916114485","https://openalex.org/W2945576245","https://openalex.org/W2946454300","https://openalex.org/W2948014923","https://openalex.org/W2950354111","https://openalex.org/W2950595506","https://openalex.org/W2951912016","https://openalex.org/W2955310315","https://openalex.org/W4239954008"],"related_works":["https://openalex.org/W4311179095","https://openalex.org/W4375852817","https://openalex.org/W2991171606","https://openalex.org/W4366224338","https://openalex.org/W2143148606","https://openalex.org/W2105786468","https://openalex.org/W2114592519","https://openalex.org/W2165284025","https://openalex.org/W2593890490","https://openalex.org/W2150640337"],"abstract_inverted_index":{"SilkDB":[0,19,55,98,166],"is":[1],"an":[2,67,152],"open-accessibility":[3],"database":[4,72,168],"and":[5,43,82,86,122,131,177],"powerful":[6],"platform":[7],"that":[8],"provides":[9,100],"comprehensive":[10],"information":[11,105,146],"on":[12],"the":[13,34,79,95,104,110,144,148,158,164,175],"silkworm":[14,35,64,80,176],"(Bombyx":[15],"mori)":[16],"genome.":[17],"Since":[18],"2.0":[20],"was":[21],"released":[22],"10":[23],"years":[24],"ago,":[25],"vast":[26],"quantities":[27],"of":[28,33,78,103,112,137,160],"data":[29,47,65,162],"about":[30],"multiple":[31],"aspects":[32],"have":[36],"been":[37],"generated,":[38],"including":[39],"genome,":[40,81],"transcriptome,":[41],"Hi-C":[42],"pangenome.":[44],"To":[45],"visualize":[46],"at":[48,109],"these":[49],"different":[50],"biological":[51],"levels,":[52],"we":[53],"present":[54],"3.0":[56,99,167],"(https://silkdb.bioinfotoolkits.net),":[57],"a":[58,74,101,171],"visual":[59],"analytic":[60],"tool":[61],"for":[62,106,157,174],"exploring":[63],"through":[66],"interactive":[68,154],"user":[69,155],"interface.":[70],"The":[71],"contains":[73],"high-quality":[75],"chromosome-level":[76],"assembly":[77],"its":[83],"coding":[84],"sequences":[85],"gene":[87,108,116,126],"sets":[88],"are":[89,140],"more":[90],"accurate":[91],"than":[92],"those":[93],"in":[94,147],"previous":[96],"version.":[97],"view":[102],"each":[107],"levels":[111],"sequence,":[113],"protein":[114],"structure,":[115],"family,":[117],"orthology,":[118],"synteny,":[119],"genome":[120,132],"organization":[121],"gives":[123],"access":[124],"to":[125,142],"expression":[127],"information,":[128],"genetic":[129],"variation":[130],"interaction":[133],"map.":[134],"A":[135],"set":[136],"visualization":[138],"tools":[139],"available":[141],"display":[143],"abundant":[145],"above":[149],"datasets.":[150],"With":[151],"improved":[153],"interface":[156],"integration":[159],"large":[161],"sets,":[163],"updated":[165],"will":[169],"be":[170],"valuable":[172],"resource":[173],"insect":[178],"research":[179],"community.":[180]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":23},{"year":2024,"cited_by_count":26},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":26},{"year":2021,"cited_by_count":21},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
