{"id":"https://openalex.org/W2979799397","doi":"https://doi.org/10.1093/nar/gkz881","title":"KnockTF: a comprehensive human gene expression profile database with knockdown/knockout of transcription factors","display_name":"KnockTF: a comprehensive human gene expression profile database with knockdown/knockout of transcription factors","publication_year":2019,"publication_date":"2019-10-08","ids":{"openalex":"https://openalex.org/W2979799397","doi":"https://doi.org/10.1093/nar/gkz881","mag":"2979799397","pmid":"https://pubmed.ncbi.nlm.nih.gov/31598675"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkz881","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz881","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D93/31697142/gkz881.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/48/D1/D93/31697142/gkz881.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074727448","display_name":"Chenchen Feng","orcid":"https://orcid.org/0000-0002-1854-356X"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenchen Feng","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101406915","display_name":"Chao Song","orcid":"https://orcid.org/0000-0003-0611-4298"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chao Song","raw_affiliation_strings":["Department of Pharmacology, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacology, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050819859","display_name":"Yuejuan Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuejuan Liu","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022537385","display_name":"Fengcui Qian","orcid":"https://orcid.org/0000-0003-3817-4690"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fengcui Qian","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004535291","display_name":"Yu Gao","orcid":"https://orcid.org/0000-0001-5090-8250"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Gao","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065296916","display_name":"Ziyu Ning","orcid":"https://orcid.org/0000-0001-7183-5281"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziyu Ning","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115694793","display_name":"Qiuyu Wang","orcid":"https://orcid.org/0009-0006-9422-7223"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiuyu Wang","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101656020","display_name":"Yong Jiang","orcid":"https://orcid.org/0000-0002-0163-5089"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yong Jiang","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101470623","display_name":"Yanyu Li","orcid":"https://orcid.org/0000-0002-1416-9216"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanyu Li","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100457560","display_name":"Meng Li","orcid":"https://orcid.org/0000-0003-2454-2157"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meng Li","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100360548","display_name":"Jiaxin Chen","orcid":"https://orcid.org/0000-0002-3507-6991"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiaxin Chen","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007750024","display_name":"Jian Zhang","orcid":"https://orcid.org/0000-0003-1507-4718"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jian Zhang","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100728506","display_name":"Chunquan Li","orcid":"https://orcid.org/0000-0002-4700-5496"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chunquan Li","raw_affiliation_strings":["School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China"],"affiliations":[{"raw_affiliation_string":"School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China","institution_ids":["https://openalex.org/I156144747"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5007750024","https://openalex.org/A5100728506"],"corresponding_institution_ids":["https://openalex.org/I156144747"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.5521,"has_fulltext":false,"cited_by_count":148,"citation_normalized_percentile":{"value":0.95753781,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"48","issue":"D1","first_page":"D93","last_page":"D100"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-knockdown","display_name":"Gene knockdown","score":0.9142988920211792},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8117690086364746},{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.7025454044342041},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6649779081344604},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.6040356159210205},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5879160761833191},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5062548518180847},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.4733410179615021},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.4574633240699768},{"id":"https://openalex.org/keywords/gene-knockout","display_name":"Gene knockout","score":0.4552558362483978},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.43436476588249207},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.42647743225097656},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.42593538761138916}],"concepts":[{"id":"https://openalex.org/C173396325","wikidata":"https://www.wikidata.org/wiki/Q1501275","display_name":"Gene knockdown","level":3,"score":0.9142988920211792},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8117690086364746},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.7025454044342041},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6649779081344604},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.6040356159210205},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5879160761833191},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5062548518180847},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.4733410179615021},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.4574633240699768},{"id":"https://openalex.org/C77957584","wikidata":"https://www.wikidata.org/wiki/Q1133550","display_name":"Gene knockout","level":3,"score":0.4552558362483978},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.43436476588249207},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.42647743225097656},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.42593538761138916}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055785","descriptor_name":"Gene Knockdown Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055785","descriptor_name":"Gene Knockdown Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055785","descriptor_name":"Gene Knockdown Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkz881","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz881","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D93/31697142/gkz881.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:31598675","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31598675","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6943067","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6943067","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkz881","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz881","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D93/31697142/gkz881.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6326061351","display_name":null,"funder_award_id":"61601150","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7396411992","display_name":null,"funder_award_id":"YQ2019C013","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8092982729","display_name":null,"funder_award_id":"81572341","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2979799397.pdf","grobid_xml":"https://content.openalex.org/works/W2979799397.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1490161904","https://openalex.org/W1611419331","https://openalex.org/W1709815505","https://openalex.org/W1965425724","https://openalex.org/W1972822540","https://openalex.org/W1988294855","https://openalex.org/W2001554877","https://openalex.org/W2018219462","https://openalex.org/W2018838463","https://openalex.org/W2034843324","https://openalex.org/W2043398720","https://openalex.org/W2045362835","https://openalex.org/W2059699217","https://openalex.org/W2060484997","https://openalex.org/W2064815984","https://openalex.org/W2077941487","https://openalex.org/W2078059415","https://openalex.org/W2098412979","https://openalex.org/W2101749257","https://openalex.org/W2102619694","https://openalex.org/W2111732181","https://openalex.org/W2118258530","https://openalex.org/W2129795133","https://openalex.org/W2130410032","https://openalex.org/W2135030836","https://openalex.org/W2135553161","https://openalex.org/W2137465688","https://openalex.org/W2140952049","https://openalex.org/W2146512944","https://openalex.org/W2149662811","https://openalex.org/W2153747430","https://openalex.org/W2155538826","https://openalex.org/W2165745669","https://openalex.org/W2185990092","https://openalex.org/W2247766769","https://openalex.org/W2262709833","https://openalex.org/W2336828812","https://openalex.org/W2534008312","https://openalex.org/W2541585197","https://openalex.org/W2559588208","https://openalex.org/W2752877137","https://openalex.org/W2762693247","https://openalex.org/W2765480297","https://openalex.org/W2766463108","https://openalex.org/W2767743008","https://openalex.org/W2898942820","https://openalex.org/W2900310474","https://openalex.org/W2950595506"],"related_works":["https://openalex.org/W2091570353","https://openalex.org/W2183420549","https://openalex.org/W1982897783","https://openalex.org/W4225426244","https://openalex.org/W2012175027","https://openalex.org/W2081507994","https://openalex.org/W2894827346","https://openalex.org/W2077582941","https://openalex.org/W2593123794","https://openalex.org/W308751227"],"abstract_inverted_index":{"Transcription":[0],"factors":[1],"(TFs)":[2],"and":[3,13,21,39,51,63,66,84,102,104,107,126,137,140,152,169,182,196],"their":[4,108],"target":[5,35,109,158,173],"genes":[6,36,110,187],"have":[7],"important":[8,31],"functions":[9,195],"in":[10,111],"human":[11,76,93],"diseases":[12],"biological":[14,198],"processes.":[15],"Gene":[16],"expression":[17,45,78,95],"profile":[18,46,79,96],"analysis":[19],"before":[20],"after":[22],"knockdown":[23,50,83,101,136],"or":[24],"knockout":[25,52,103,138],"is":[26],"one":[27],"of":[28,37,81,90,119,150,156,172,188],"the":[29,58],"most":[30],"strategies":[32],"for":[33,92,186],"obtaining":[34],"TFs":[38,106,132,151,164],"exploring":[40],"TF":[41,49,82,100],"functions.":[42],"Human":[43],"gene":[44,77,94,180],"datasets":[47,97,128],"with":[48,99,130],"are":[53],"accumulating":[54],"rapidly.":[55],"Based":[56],"on":[57],"urgent":[59],"need":[60],"to":[61,166],"comprehensively":[62],"effectively":[64],"collect":[65],"process":[67],"these":[68],"data,":[69],"we":[70],"developed":[71],"KnockTF":[72,86,120,145,175,190],"(http://www.licpathway.net/KnockTF/index.html),":[73],"a":[74,88,112,177],"comprehensive":[75],"database":[80],"knockout.":[85],"provides":[87,161],"number":[89],"resources":[91],"associated":[98,129],"annotates":[105],"tissue/cell":[113,143],"type-specific":[114],"manner.":[115],"The":[116],"current":[117],"version":[118],"has":[121],"570":[122],"manually":[123],"curated":[124],"RNA-seq":[125],"microarray":[127],"308":[131],"disrupted":[133],"by":[134],"different":[135],"techniques":[139],"across":[141],"multiple":[142],"types.":[144],"collects":[146],"upstream":[147],"pathway":[148],"information":[149],"functional":[153],"annotation":[154],"results":[155],"downstream":[157],"genes.":[159,174],"It":[160],"details":[162],"about":[163],"binding":[165],"promoters,":[167],"super-enhancers":[168],"typical":[170],"enhancers":[171],"constructs":[176],"TF-differentially":[178],"expressed":[179],"network":[181,184],"performs":[183],"analyses":[185],"interest.":[189],"will":[191],"help":[192],"elucidate":[193],"TF-related":[194],"potential":[197],"effects.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":26},{"year":2024,"cited_by_count":31},{"year":2023,"cited_by_count":29},{"year":2022,"cited_by_count":17},{"year":2021,"cited_by_count":27},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
