{"id":"https://openalex.org/W2945363828","doi":"https://doi.org/10.1093/nar/gkz428","title":"BEERE: a web server for biomedical entity expansion, ranking and explorations","display_name":"BEERE: a web server for biomedical entity expansion, ranking and explorations","publication_year":2019,"publication_date":"2019-05-20","ids":{"openalex":"https://openalex.org/W2945363828","doi":"https://doi.org/10.1093/nar/gkz428","mag":"2945363828","pmid":"https://pubmed.ncbi.nlm.nih.gov/31114876"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkz428","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz428","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W578/28880313/gkz428.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/47/W1/W578/28880313/gkz428.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041167576","display_name":"Zongliang Yue","orcid":"https://orcid.org/0000-0001-8290-123X"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zongliang Yue","raw_affiliation_strings":["Informatics Institute, School of Medicine, the University of Alabama at Birmingham, AL 35233, USA"],"affiliations":[{"raw_affiliation_string":"Informatics Institute, School of Medicine, the University of Alabama at Birmingham, AL 35233, USA","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067067884","display_name":"Christopher D. Willey","orcid":"https://orcid.org/0000-0001-9953-0279"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher D Willey","raw_affiliation_strings":["Department of Radiation Oncology, School of Medicine, the University of Alabama at Birmingham, AL 35233, USA"],"affiliations":[{"raw_affiliation_string":"Department of Radiation Oncology, School of Medicine, the University of Alabama at Birmingham, AL 35233, USA","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044496405","display_name":"Anita B. Hjelmeland","orcid":"https://orcid.org/0000-0003-2200-3248"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anita B Hjelmeland","raw_affiliation_strings":["Department of Cell, Developmental and Integrative Biology, School of Medicine, the University of Alabama at Birmingham, AL 35233, USA"],"affiliations":[{"raw_affiliation_string":"Department of Cell, Developmental and Integrative Biology, School of Medicine, the University of Alabama at Birmingham, AL 35233, USA","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058469124","display_name":"Jake Y. Chen","orcid":"https://orcid.org/0000-0001-8829-7504"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jake Y Chen","raw_affiliation_strings":["Informatics Institute, School of Medicine, the University of Alabama at Birmingham, AL 35233, USA"],"affiliations":[{"raw_affiliation_string":"Informatics Institute, School of Medicine, the University of Alabama at Birmingham, AL 35233, USA","institution_ids":["https://openalex.org/I32389192"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5058469124"],"corresponding_institution_ids":["https://openalex.org/I32389192"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.3426,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.58890209,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"47","issue":"W1","first_page":"W578","last_page":"W586"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9883999824523926,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.6566698551177979},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6080741882324219},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5805926322937012},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5475557446479797},{"id":"https://openalex.org/keywords/login","display_name":"Login","score":0.5258579850196838},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4168921709060669},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3744013011455536},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32336485385894775},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.30812153220176697}],"concepts":[{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.6566698551177979},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6080741882324219},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5805926322937012},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5475557446479797},{"id":"https://openalex.org/C113324615","wikidata":"https://www.wikidata.org/wiki/Q472302","display_name":"Login","level":2,"score":0.5258579850196838},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4168921709060669},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3744013011455536},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32336485385894775},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.30812153220176697},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkz428","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz428","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W578/28880313/gkz428.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:31114876","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31114876","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:5577316","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6602520","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"doi:10.25504/fairsharing.f3dla1","is_oa":true,"landing_page_url":"https://doi.org/10.25504/fairsharing.f3dla1","pdf_url":null,"source":{"id":"https://openalex.org/S7407053452","display_name":"FAIRsharing.org","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.1093/nar/gkz428","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz428","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W578/28880313/gkz428.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2031932410","display_name":null,"funder_award_id":"1TL1TR001418\u201301","funder_id":"https://openalex.org/F4320310588","funder_display_name":"Center for Clinical and Translational Science, University of Illinois at Chicago"},{"id":"https://openalex.org/G6063100290","display_name":null,"funder_award_id":"U01CA223976","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320310431","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205"},{"id":"https://openalex.org/F4320310588","display_name":"Center for Clinical and Translational Science, University of Illinois at Chicago","ror":"https://ror.org/02mpq6x41"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2945363828.pdf","grobid_xml":"https://content.openalex.org/works/W2945363828.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W85744764","https://openalex.org/W96342457","https://openalex.org/W954754213","https://openalex.org/W1409617254","https://openalex.org/W1554723963","https://openalex.org/W1929627202","https://openalex.org/W1964670939","https://openalex.org/W1965789647","https://openalex.org/W1966519033","https://openalex.org/W1999740358","https://openalex.org/W2032755318","https://openalex.org/W2052250375","https://openalex.org/W2066325577","https://openalex.org/W2090247362","https://openalex.org/W2112670696","https://openalex.org/W2117446654","https://openalex.org/W2118246164","https://openalex.org/W2119418518","https://openalex.org/W2124649657","https://openalex.org/W2127745238","https://openalex.org/W2132056568","https://openalex.org/W2160198684","https://openalex.org/W2162151166","https://openalex.org/W2169622100","https://openalex.org/W2170866859","https://openalex.org/W2173732482","https://openalex.org/W2175107396","https://openalex.org/W2335512083","https://openalex.org/W2410743230","https://openalex.org/W2495120132","https://openalex.org/W2533611849","https://openalex.org/W2537623931","https://openalex.org/W2588469192","https://openalex.org/W2607153830","https://openalex.org/W2768074158","https://openalex.org/W2777149863","https://openalex.org/W2777949341","https://openalex.org/W2803100310","https://openalex.org/W2906752223","https://openalex.org/W2945363828","https://openalex.org/W2963339489","https://openalex.org/W3025721698","https://openalex.org/W6603518227","https://openalex.org/W6603808517","https://openalex.org/W6628245547","https://openalex.org/W6641670315","https://openalex.org/W6777543587"],"related_works":["https://openalex.org/W4256170434","https://openalex.org/W2118564381","https://openalex.org/W2163901716","https://openalex.org/W2152204162","https://openalex.org/W2739821120","https://openalex.org/W2150136235","https://openalex.org/W2026095310","https://openalex.org/W2140661912","https://openalex.org/W2076082579","https://openalex.org/W2153069032"],"abstract_inverted_index":{"BEERE":[0,39,123],"(Biomedical":[1],"Entity":[2],"Expansion,":[3],"Ranking":[4],"and":[5,149,159,185,194],"Explorations)":[6],"is":[7,183],"a":[8,66,83,125],"new":[9,103],"web-based":[10],"data":[11,171,178],"analysis":[12],"tool":[13],"to":[14,42,176,187],"help":[15,43,72,100],"biomedical":[16,24],"researchers":[17],"characterize":[18],"any":[19,137],"input":[20,64,87],"list":[21,126],"of":[22,35,48,65,78,93,114,127,164],"genes/proteins,":[23],"terms":[25],"or":[26,52,58,82,106,167],"their":[27],"combinations,":[28],"i.e.":[29],"'biomedical":[30],"entities',":[31],"in":[32,135],"the":[33,46,62,75,85,90,128,145,147,165],"context":[34],"existing":[36],"literature.":[37],"Specifically,":[38],"first":[40],"aims":[41],"users":[44,73,101,189],"examine":[45],"credibility":[47],"known":[49,133],"entity-to-entity":[50],"associative":[51],"semantic":[53],"relationships":[54,134],"supported":[55],"by":[56,88,109],"database":[57],"literature":[59],"references":[60],"from":[61,122,144],"user":[63,86],"gene/term":[67],"list.":[68],"Then,":[69],"it":[70,98],"will":[71,99],"uncover":[74],"relative":[76],"importance":[77],"each":[79,157],"entity-a":[80],"gene":[81,104,166],"term-within":[84],"computing":[89],"ranking":[91,150],"scores":[92,151],"all":[94,188],"entities.":[95],"At":[96],"last,":[97],"hypothesize":[102],"functions":[105],"genotype-phenotype":[107],"associations":[108],"an":[110,160],"interactive":[111,161],"visual":[112],"interface":[113],"constructed":[115],"global":[116],"entity":[117],"relationship":[118],"network.":[119],"The":[120,180],"output":[121],"includes:":[124],"original":[129],"entities":[130,139],"matched":[131],"with":[132,153,190],"databases;":[136],"expanded":[138],"that":[140,174],"may":[141],"be":[142,196],"generated":[143],"analysis;":[146],"ranks":[148],"reported":[152],"statistical":[154],"significance":[155],"for":[156],"entity;":[158],"graphical":[162],"display":[163],"term":[168],"network":[169],"within":[170],"provenance":[172],"annotations":[173],"link":[175],"external":[177],"sources.":[179],"web":[181],"server":[182],"free":[184],"open":[186],"no":[191],"login":[192],"requirement":[193],"can":[195],"accessed":[197],"at":[198],"http://discovery.informatics.uab.edu/beere/.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2019,"cited_by_count":1}],"updated_date":"2026-03-31T07:56:22.981413","created_date":"2019-05-29T00:00:00"}
