{"id":"https://openalex.org/W2946725940","doi":"https://doi.org/10.1093/nar/gkz412","title":"HNADOCK: a nucleic acid docking server for modeling RNA/DNA\u2013RNA/DNA 3D complex structures","display_name":"HNADOCK: a nucleic acid docking server for modeling RNA/DNA\u2013RNA/DNA 3D complex structures","publication_year":2019,"publication_date":"2019-05-06","ids":{"openalex":"https://openalex.org/W2946725940","doi":"https://doi.org/10.1093/nar/gkz412","mag":"2946725940","pmid":"https://pubmed.ncbi.nlm.nih.gov/31114906"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkz412","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz412","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W35/28880157/gkz412.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/47/W1/W35/28880157/gkz412.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059824731","display_name":"Jiahua He","orcid":"https://orcid.org/0000-0002-9075-4978"},"institutions":[{"id":"https://openalex.org/I4210112540","display_name":"Institute of Biophysics","ror":"https://ror.org/01tyv8576","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112540"]},{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiahua He","raw_affiliation_strings":["Institute of Biophysics, School of Physics, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biophysics, School of Physics, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P.R. China","institution_ids":["https://openalex.org/I4210112540","https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100384748","display_name":"Jun Wang","orcid":"https://orcid.org/0000-0002-4871-6556"},"institutions":[{"id":"https://openalex.org/I4210112540","display_name":"Institute of Biophysics","ror":"https://ror.org/01tyv8576","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112540"]},{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Wang","raw_affiliation_strings":["Institute of Biophysics, School of Physics, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biophysics, School of Physics, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P.R. China","institution_ids":["https://openalex.org/I4210112540","https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051853189","display_name":"Huanyu Tao","orcid":null},"institutions":[{"id":"https://openalex.org/I4210112540","display_name":"Institute of Biophysics","ror":"https://ror.org/01tyv8576","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112540"]},{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huanyu Tao","raw_affiliation_strings":["Institute of Biophysics, School of Physics, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biophysics, School of Physics, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P.R. China","institution_ids":["https://openalex.org/I4210112540","https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088434807","display_name":"Yi Xiao","orcid":null},"institutions":[{"id":"https://openalex.org/I4210112540","display_name":"Institute of Biophysics","ror":"https://ror.org/01tyv8576","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112540"]},{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yi Xiao","raw_affiliation_strings":["Institute of Biophysics, School of Physics, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biophysics, School of Physics, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P.R. China","institution_ids":["https://openalex.org/I4210112540","https://openalex.org/I47720641"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053305024","display_name":"Sheng\u2010You Huang","orcid":"https://orcid.org/0000-0002-4209-4565"},"institutions":[{"id":"https://openalex.org/I4210112540","display_name":"Institute of Biophysics","ror":"https://ror.org/01tyv8576","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112540"]},{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Sheng-You Huang","raw_affiliation_strings":["Institute of Biophysics, School of Physics, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biophysics, School of Physics, Huazhong University of Science and Technology, Wuhan, Hubei 430074, P.R. China","institution_ids":["https://openalex.org/I4210112540","https://openalex.org/I47720641"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5053305024","https://openalex.org/A5088434807"],"corresponding_institution_ids":["https://openalex.org/I4210112540","https://openalex.org/I47720641"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.1852,"has_fulltext":true,"cited_by_count":52,"citation_normalized_percentile":{"value":0.93127618,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"47","issue":"W1","first_page":"W35","last_page":"W42"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.8502752780914307},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7384142279624939},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5676698088645935},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.5626780390739441},{"id":"https://openalex.org/keywords/nucleic-acid","display_name":"Nucleic acid","score":0.5364431142807007},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.5281664729118347},{"id":"https://openalex.org/keywords/base-pair","display_name":"Base pair","score":0.5089952945709229},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4524598717689514},{"id":"https://openalex.org/keywords/transcription","display_name":"Transcription (linguistics)","score":0.42097708582878113},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.29824063181877136},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1352134346961975}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.8502752780914307},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7384142279624939},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5676698088645935},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.5626780390739441},{"id":"https://openalex.org/C24107716","wikidata":"https://www.wikidata.org/wiki/Q123619","display_name":"Nucleic acid","level":2,"score":0.5364431142807007},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.5281664729118347},{"id":"https://openalex.org/C185581394","wikidata":"https://www.wikidata.org/wiki/Q145911","display_name":"Base pair","level":3,"score":0.5089952945709229},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4524598717689514},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.42097708582878113},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.29824063181877136},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1352134346961975},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkz412","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz412","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W35/28880157/gkz412.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:31114906","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31114906","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:5577288","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6602492","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkz412","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz412","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W35/28880157/gkz412.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2516367764","display_name":null,"funder_award_id":"2018KFYYXJJ033","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G2790632573","display_name":null,"funder_award_id":"31570722","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3764273571","display_name":null,"funder_award_id":"3004012104","funder_id":"https://openalex.org/F4320321883","funder_display_name":"Huazhong University of Science and Technology"},{"id":"https://openalex.org/G7476102074","display_name":null,"funder_award_id":"2016YFC1305805","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7582944686","display_name":null,"funder_award_id":"2016YFC1305800","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7618829171","display_name":"\u86cb\u767d\u8d28\u76f8\u4e92\u4f5c\u7528\u7684\u591a\u4f53\u5173\u8054\u6548\u5e94\u548c\u5206\u5b50\u67d4\u6027\u7814\u7a76","funder_award_id":"31670724","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321883","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2946725940.pdf","grobid_xml":"https://content.openalex.org/works/W2946725940.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1557536303","https://openalex.org/W1972508745","https://openalex.org/W1976961172","https://openalex.org/W1979284950","https://openalex.org/W1995164506","https://openalex.org/W2000383223","https://openalex.org/W2009215595","https://openalex.org/W2022284509","https://openalex.org/W2048724765","https://openalex.org/W2050110866","https://openalex.org/W2053150979","https://openalex.org/W2053538195","https://openalex.org/W2053855164","https://openalex.org/W2058615001","https://openalex.org/W2083734879","https://openalex.org/W2086561953","https://openalex.org/W2101086441","https://openalex.org/W2106210646","https://openalex.org/W2113816707","https://openalex.org/W2114520383","https://openalex.org/W2118233996","https://openalex.org/W2119340328","https://openalex.org/W2130479394","https://openalex.org/W2134489577","https://openalex.org/W2137167381","https://openalex.org/W2141351700","https://openalex.org/W2151460035","https://openalex.org/W2153255725","https://openalex.org/W2153731681","https://openalex.org/W2160515562","https://openalex.org/W2170564629","https://openalex.org/W2174630165","https://openalex.org/W2192499203","https://openalex.org/W2340902485","https://openalex.org/W2341424800","https://openalex.org/W2341963847","https://openalex.org/W2521652149","https://openalex.org/W2522453348","https://openalex.org/W2554722417","https://openalex.org/W2598257512","https://openalex.org/W2612940361","https://openalex.org/W2615136515","https://openalex.org/W2757754267","https://openalex.org/W2791771306","https://openalex.org/W2806399642","https://openalex.org/W2862730334","https://openalex.org/W2886301812","https://openalex.org/W2888012743","https://openalex.org/W2943205517","https://openalex.org/W6788151078"],"related_works":["https://openalex.org/W4386783509","https://openalex.org/W4296030002","https://openalex.org/W3177804739","https://openalex.org/W633173308","https://openalex.org/W67662248","https://openalex.org/W2279743539","https://openalex.org/W2071735128","https://openalex.org/W1987175900","https://openalex.org/W2587932899","https://openalex.org/W3211664934"],"abstract_inverted_index":{"Interactions":[0],"between":[1,26,60],"nuclide":[2],"acids":[3],"(RNA/DNA)":[4],"play":[5],"important":[6],"roles":[7],"in":[8,194],"many":[9],"basic":[10],"cellular":[11],"activities":[12],"like":[13],"transcription":[14],"regulation,":[15],"RNA":[16,147,157],"processing,":[17],"and":[18,66,89,99,137,188],"protein":[19],"synthesis.":[20],"Therefore,":[21],"determining":[22],"the":[23,32,56,93,102,145,166,177,182],"complex":[24,58],"structures":[25,59],"RNAs/DNAs":[27],"is":[28,186,202],"crucial":[29],"to":[30,54,123],"understand":[31],"molecular":[33],"mechanism":[34],"of":[35,95,116,142,165],"related":[36],"RNA/DNA-RNA/DNA":[37],"interactions.":[38],"Here,":[39],"we":[40],"have":[41],"presented":[42],"HNADOCK,":[43],"a":[44,112,134,139,192],"user-friendly":[45],"web":[46,200],"server":[47,82,110,131,201],"for":[48,71,79,118,125,181],"nucleic":[49],"acid":[50,52],"(NA)-nucleic":[51],"docking":[53,178],"model":[55],"3D":[57],"two":[61],"RNAs/DNAs,":[62],"where":[63],"both":[64,86],"sequence":[65,90,128],"structure":[67,75,88,107],"inputs":[68,76,91],"are":[69,77,149],"accepted":[70],"RNAs,":[72],"while":[73],"only":[74],"supported":[78],"DNAs.":[80],"HNADOCK":[81,109,130,185,199],"was":[83,160],"tested":[84],"through":[85],"unbound":[87],"on":[92],"benchmark":[94],"60":[96],"RNA-RNA":[97,171],"complexes":[98],"compared":[100,122],"with":[101],"state-of-the-art":[103],"algorithm":[104],"SimRNA.":[105,126],"For":[106,127],"input,":[108,129],"achieved":[111],"high":[113],"success":[114,140],"rate":[115,141],"71.7%":[117],"top":[119,183],"10":[120,196],"predictions,":[121],"58.3%":[124],"also":[132,161],"obtained":[133],"satisfactory":[135],"performance":[136],"gave":[138],"83.3%":[143],"when":[144,153],"bound":[146,156],"templates":[148],"included":[150],"or":[151],"53.3%":[152],"excluding":[154],"those":[155],"templates.":[158],"It":[159],"found":[162],"that":[163],"inclusion":[164],"inter-RNA":[167],"base-pairing":[168],"information":[169],"from":[170],"interaction":[172],"prediction":[173],"can":[174,189],"significantly":[175],"improve":[176],"accuracy,":[179],"especially":[180],"prediction.":[184],"fast":[187],"normally":[190],"finish":[191],"job":[193],"about":[195],"minutes.":[197],"The":[198],"available":[203],"at":[204],"http://huanglab.phys.hust.edu.cn/hnadock/.":[205]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":2}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
