{"id":"https://openalex.org/W2945310727","doi":"https://doi.org/10.1093/nar/gkz393","title":"Geneshot: search engine for ranking genes from arbitrary text queries","display_name":"Geneshot: search engine for ranking genes from arbitrary text queries","publication_year":2019,"publication_date":"2019-05-01","ids":{"openalex":"https://openalex.org/W2945310727","doi":"https://doi.org/10.1093/nar/gkz393","mag":"2945310727","pmid":"https://pubmed.ncbi.nlm.nih.gov/31114885"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkz393","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz393","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W571/28879787/gkz393.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/47/W1/W571/28879787/gkz393.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016259488","display_name":"Alexander Lachmann","orcid":"https://orcid.org/0000-0002-1982-7652"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander Lachmann","raw_affiliation_strings":["Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics,\u00a0Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1603, New York, NY 10029 USA"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics,\u00a0Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1603, New York, NY 10029 USA","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049079630","display_name":"Brian M. Schilder","orcid":"https://orcid.org/0000-0001-5949-2191"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian M Schilder","raw_affiliation_strings":["Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics,\u00a0Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1603, New York, NY 10029 USA"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics,\u00a0Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1603, New York, NY 10029 USA","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053232618","display_name":"Megan L. Wojciechowicz","orcid":"https://orcid.org/0000-0001-7558-5646"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Megan L Wojciechowicz","raw_affiliation_strings":["Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics,\u00a0Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1603, New York, NY 10029 USA"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics,\u00a0Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1603, New York, NY 10029 USA","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033642313","display_name":"Denis Torre","orcid":"https://orcid.org/0000-0003-4615-223X"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Denis Torre","raw_affiliation_strings":["Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics,\u00a0Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1603, New York, NY 10029 USA"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics,\u00a0Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1603, New York, NY 10029 USA","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041050302","display_name":"Maxim V. Kuleshov","orcid":"https://orcid.org/0000-0002-7812-7752"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maxim V Kuleshov","raw_affiliation_strings":["Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics,\u00a0Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1603, New York, NY 10029 USA"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics,\u00a0Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1603, New York, NY 10029 USA","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018651347","display_name":"Alexandra Keenan","orcid":null},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexandra B Keenan","raw_affiliation_strings":["Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics,\u00a0Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1603, New York, NY 10029 USA"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics,\u00a0Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1603, New York, NY 10029 USA","institution_ids":["https://openalex.org/I98704320"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032951414","display_name":"Avi Ma\u2019ayan","orcid":"https://orcid.org/0000-0002-6904-1017"},"institutions":[{"id":"https://openalex.org/I98704320","display_name":"Icahn School of Medicine at Mount Sinai","ror":"https://ror.org/04a9tmd77","country_code":"US","type":"education","lineage":["https://openalex.org/I1320796813","https://openalex.org/I98704320"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Avi Ma\u2019ayan","raw_affiliation_strings":["Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics,\u00a0Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1603, New York, NY 10029 USA"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics,\u00a0Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1603, New York, NY 10029 USA","institution_ids":["https://openalex.org/I98704320"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5032951414"],"corresponding_institution_ids":["https://openalex.org/I98704320"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.8647,"has_fulltext":true,"cited_by_count":93,"citation_normalized_percentile":{"value":0.94501023,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"47","issue":"W1","first_page":"W571","last_page":"W577"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.7543988227844238},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6671406626701355},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.6456589698791504},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5688815712928772},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5279905796051025},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.47827017307281494},{"id":"https://openalex.org/keywords/novelty","display_name":"Novelty","score":0.47079339623451233},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.44418567419052124},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4399120509624481},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.42359238862991333},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.4147428274154663},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3495975732803345},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.09216642379760742}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.7543988227844238},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6671406626701355},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.6456589698791504},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5688815712928772},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5279905796051025},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.47827017307281494},{"id":"https://openalex.org/C2778738651","wikidata":"https://www.wikidata.org/wiki/Q16546687","display_name":"Novelty","level":2,"score":0.47079339623451233},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.44418567419052124},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4399120509624481},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.42359238862991333},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.4147428274154663},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3495975732803345},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.09216642379760742},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C27206212","wikidata":"https://www.wikidata.org/wiki/Q34178","display_name":"Theology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012108","descriptor_name":"Research Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012108","descriptor_name":"Research Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012108","descriptor_name":"Research Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012108","descriptor_name":"Research Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkz393","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz393","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W571/28879787/gkz393.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:31114885","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31114885","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:5577289","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6602493","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/101874","is_oa":true,"landing_page_url":"http://hdl.handle.net/10044/1/101874","pdf_url":null,"source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"W577","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkz393","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz393","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W571/28879787/gkz393.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1128421816","display_name":null,"funder_award_id":"U54-HL127624","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2641618911","display_name":null,"funder_award_id":"U24-CA224260","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4448270500","display_name":null,"funder_award_id":"OT3-OD025467","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5793542644","display_name":null,"funder_award_id":"T32-GM062754","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7335327132","display_name":null,"funder_award_id":"HL127624","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2945310727.pdf","grobid_xml":"https://content.openalex.org/works/W2945310727.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1574680346","https://openalex.org/W1614298861","https://openalex.org/W1815832537","https://openalex.org/W1972898190","https://openalex.org/W1994306321","https://openalex.org/W2062584010","https://openalex.org/W2070050178","https://openalex.org/W2107580398","https://openalex.org/W2115662330","https://openalex.org/W2118258530","https://openalex.org/W2121720309","https://openalex.org/W2130410032","https://openalex.org/W2135415614","https://openalex.org/W2147558260","https://openalex.org/W2153091158","https://openalex.org/W2159482845","https://openalex.org/W2345356016","https://openalex.org/W2462053388","https://openalex.org/W2558366645","https://openalex.org/W2625713191","https://openalex.org/W2788451340","https://openalex.org/W2900569176","https://openalex.org/W2900668971","https://openalex.org/W2907094739","https://openalex.org/W2911403881","https://openalex.org/W2934733279","https://openalex.org/W2953067954","https://openalex.org/W3113043731","https://openalex.org/W4237381349","https://openalex.org/W4294216483","https://openalex.org/W4294576509","https://openalex.org/W6636510571","https://openalex.org/W6757764690"],"related_works":["https://openalex.org/W2381242807","https://openalex.org/W3126131230","https://openalex.org/W2347541121","https://openalex.org/W2080951048","https://openalex.org/W4288804799","https://openalex.org/W3032237421","https://openalex.org/W2390346111","https://openalex.org/W3011883280","https://openalex.org/W2369082698","https://openalex.org/W2367099342"],"abstract_inverted_index":{"The":[0,109,160],"frequency":[1],"by":[2],"which":[3],"genes":[4,25,69,80,94],"are":[5,26,31,112,165],"studied":[6],"correlates":[7],"with":[8,87,99,114,156],"the":[9,48,72,88,100,147],"prior":[10],"knowledge":[11],"accumulated":[12],"about":[13],"them.":[14],"This":[15],"leads":[16],"to":[17,39,44,47,59,64,71,96,145],"an":[18],"imbalance":[19],"in":[20,85],"research":[21],"attention":[22,46],"where":[23],"some":[24],"highly":[27],"investigated":[28],"while":[29],"others":[30],"ignored.":[32],"Geneshot":[33,56,121,141,161],"is":[34],"a":[35,52],"search":[36,62,73,89,110],"engine":[37],"developed":[38],"illuminate":[40],"this":[41],"gap":[42],"and":[43,152,163,167],"promote":[45],"under-studied":[49],"genome.":[50],"Through":[51],"simple":[53],"web":[54],"interface,":[55],"enables":[57],"researchers":[58],"enter":[60],"arbitrary":[61],"terms,":[63,90],"receive":[65],"ranked":[66,76],"lists":[67,78],"of":[68,149],"relevant":[70,158],"terms.":[74],"Returned":[75],"gene":[77,119,150,154],"contain":[79],"that":[81],"were":[82],"previously":[83],"published":[84],"association":[86],"as":[91,93],"well":[92],"predicted":[95],"be":[97,143],"associated":[98],"terms":[101],"based":[102],"on":[103],"data":[104,134],"integration":[105],"from":[106,126,131,136,170],"multiple":[107,137],"sources.":[108,138],"results":[111],"presented":[113],"interactive":[115],"visualizations.":[116],"To":[117],"predict":[118],"function,":[120],"utilizes":[122],"gene-gene":[123,132],"similarity":[124],"matrices":[125],"processed":[127],"RNA-seq":[128],"data,":[129],"or":[130],"co-occurrence":[133],"obtained":[135],"In":[139],"addition,":[140],"can":[142],"used":[144],"analyze":[146],"novelty":[148],"sets":[151,155],"augment":[153],"additional":[157],"genes.":[159],"web-server":[162],"API":[164],"freely":[166],"openly":[168],"available":[169],"https://amp.pharm.mssm.edu/geneshot.":[171]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":16},{"year":2022,"cited_by_count":18},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
