{"id":"https://openalex.org/W2944870141","doi":"https://doi.org/10.1093/nar/gkz380","title":"Prophage Hunter: an integrative hunting tool for active prophages","display_name":"Prophage Hunter: an integrative hunting tool for active prophages","publication_year":2019,"publication_date":"2019-05-17","ids":{"openalex":"https://openalex.org/W2944870141","doi":"https://doi.org/10.1093/nar/gkz380","mag":"2944870141","pmid":"https://pubmed.ncbi.nlm.nih.gov/31114893"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkz380","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz380","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W74/28880097/gkz380.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/47/W1/W74/28880097/gkz380.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025905745","display_name":"Wenchen Song","orcid":"https://orcid.org/0000-0002-3114-7254"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I108688024","display_name":"Qingdao University","ror":"https://ror.org/021cj6z65","country_code":"CN","type":"education","lineage":["https://openalex.org/I108688024"]},{"id":"https://openalex.org/I4210149137","display_name":"China National GeneBank","ror":"https://ror.org/03n9hr695","country_code":"CN","type":"archive","lineage":["https://openalex.org/I4210149137"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenchen Song","raw_affiliation_strings":["BGI-Shenzhen, Shenzhen\u00a0518083, China","China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China","Department of Basic Medical Sciences, Qingdao University, Qingdao\u00a0266071, China"],"affiliations":[{"raw_affiliation_string":"BGI-Shenzhen, Shenzhen\u00a0518083, China","institution_ids":["https://openalex.org/I100135526"]},{"raw_affiliation_string":"China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China","institution_ids":["https://openalex.org/I4210149137"]},{"raw_affiliation_string":"Department of Basic Medical Sciences, Qingdao University, Qingdao\u00a0266071, China","institution_ids":["https://openalex.org/I108688024"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032772082","display_name":"Hai-Xi Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I4210149137","display_name":"China National GeneBank","ror":"https://ror.org/03n9hr695","country_code":"CN","type":"archive","lineage":["https://openalex.org/I4210149137"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hai-Xi Sun","raw_affiliation_strings":["BGI-Shenzhen, Shenzhen\u00a0518083, China","China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China"],"affiliations":[{"raw_affiliation_string":"BGI-Shenzhen, Shenzhen\u00a0518083, China","institution_ids":["https://openalex.org/I100135526"]},{"raw_affiliation_string":"China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China","institution_ids":["https://openalex.org/I4210149137"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026365327","display_name":"Carolyn Zhang","orcid":"https://orcid.org/0000-0002-2151-4743"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carolyn Zhang","raw_affiliation_strings":["Department of Biomedical Engineering, Duke University, Durham, NC 27708, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Duke University, Durham, NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100354298","display_name":"Cheng Li","orcid":"https://orcid.org/0000-0003-4366-6139"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I4210149137","display_name":"China National GeneBank","ror":"https://ror.org/03n9hr695","country_code":"CN","type":"archive","lineage":["https://openalex.org/I4210149137"]},{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Cheng","raw_affiliation_strings":["BGI-Shenzhen, Shenzhen\u00a0518083, China","China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China","South China University of Technology, Guangzhou, Guangdong\u00a0510640, China"],"affiliations":[{"raw_affiliation_string":"BGI-Shenzhen, Shenzhen\u00a0518083, China","institution_ids":["https://openalex.org/I100135526"]},{"raw_affiliation_string":"China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China","institution_ids":["https://openalex.org/I4210149137"]},{"raw_affiliation_string":"South China University of Technology, Guangzhou, Guangdong\u00a0510640, China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039100589","display_name":"Ye Peng","orcid":"https://orcid.org/0000-0003-3791-2305"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I4210149137","display_name":"China National GeneBank","ror":"https://ror.org/03n9hr695","country_code":"CN","type":"archive","lineage":["https://openalex.org/I4210149137"]},{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ye Peng","raw_affiliation_strings":["BGI-Shenzhen, Shenzhen\u00a0518083, China","China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China","South China University of Technology, Guangzhou, Guangdong\u00a0510640, China"],"affiliations":[{"raw_affiliation_string":"BGI-Shenzhen, Shenzhen\u00a0518083, China","institution_ids":["https://openalex.org/I100135526"]},{"raw_affiliation_string":"China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China","institution_ids":["https://openalex.org/I4210149137"]},{"raw_affiliation_string":"South China University of Technology, Guangzhou, Guangdong\u00a0510640, China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052151397","display_name":"Ziqing Deng","orcid":"https://orcid.org/0000-0001-8726-0160"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I4210149137","display_name":"China National GeneBank","ror":"https://ror.org/03n9hr695","country_code":"CN","type":"archive","lineage":["https://openalex.org/I4210149137"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziqing Deng","raw_affiliation_strings":["BGI-Shenzhen, Shenzhen\u00a0518083, China","China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China"],"affiliations":[{"raw_affiliation_string":"BGI-Shenzhen, Shenzhen\u00a0518083, China","institution_ids":["https://openalex.org/I100135526"]},{"raw_affiliation_string":"China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China","institution_ids":["https://openalex.org/I4210149137"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100411794","display_name":"Dan Wang","orcid":"https://orcid.org/0000-0002-0921-2726"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I4210149137","display_name":"China National GeneBank","ror":"https://ror.org/03n9hr695","country_code":"CN","type":"archive","lineage":["https://openalex.org/I4210149137"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dan Wang","raw_affiliation_strings":["BGI-Shenzhen, Shenzhen\u00a0518083, China","China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China"],"affiliations":[{"raw_affiliation_string":"BGI-Shenzhen, Shenzhen\u00a0518083, China","institution_ids":["https://openalex.org/I100135526"]},{"raw_affiliation_string":"China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China","institution_ids":["https://openalex.org/I4210149137"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100377598","display_name":"Yun Wang","orcid":"https://orcid.org/0000-0001-5872-3269"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I4210149137","display_name":"China National GeneBank","ror":"https://ror.org/03n9hr695","country_code":"CN","type":"archive","lineage":["https://openalex.org/I4210149137"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yun Wang","raw_affiliation_strings":["BGI-Shenzhen, Shenzhen\u00a0518083, China","China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China"],"affiliations":[{"raw_affiliation_string":"BGI-Shenzhen, Shenzhen\u00a0518083, China","institution_ids":["https://openalex.org/I100135526"]},{"raw_affiliation_string":"China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China","institution_ids":["https://openalex.org/I4210149137"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070521312","display_name":"Ming Hu","orcid":"https://orcid.org/0000-0002-1233-6762"},"institutions":[{"id":"https://openalex.org/I108688024","display_name":"Qingdao University","ror":"https://ror.org/021cj6z65","country_code":"CN","type":"education","lineage":["https://openalex.org/I108688024"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ming Hu","raw_affiliation_strings":["Department of Basic Medical Sciences, Qingdao University, Qingdao\u00a0266071, China"],"affiliations":[{"raw_affiliation_string":"Department of Basic Medical Sciences, Qingdao University, Qingdao\u00a0266071, China","institution_ids":["https://openalex.org/I108688024"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014967953","display_name":"Wenen Liu","orcid":"https://orcid.org/0000-0003-2561-1118"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210159865","display_name":"Xiangya Hospital Central South University","ror":"https://ror.org/05c1yfj14","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210159865"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenen Liu","raw_affiliation_strings":["Department of Clinical Laboratory, Xiangya Hospital, Central South University, Changsha 410008, China"],"affiliations":[{"raw_affiliation_string":"Department of Clinical Laboratory, Xiangya Hospital, Central South University, Changsha 410008, China","institution_ids":["https://openalex.org/I4210159865","https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004969934","display_name":"Huanming Yang","orcid":"https://orcid.org/0000-0002-0858-3410"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I4210149137","display_name":"China National GeneBank","ror":"https://ror.org/03n9hr695","country_code":"CN","type":"archive","lineage":["https://openalex.org/I4210149137"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huanming Yang","raw_affiliation_strings":["BGI-Shenzhen, Shenzhen\u00a0518083, China","China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China"],"affiliations":[{"raw_affiliation_string":"BGI-Shenzhen, Shenzhen\u00a0518083, China","institution_ids":["https://openalex.org/I100135526"]},{"raw_affiliation_string":"China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China","institution_ids":["https://openalex.org/I4210149137"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100628783","display_name":"Yue Shen","orcid":"https://orcid.org/0000-0002-3276-7295"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I4210149137","display_name":"China National GeneBank","ror":"https://ror.org/03n9hr695","country_code":"CN","type":"archive","lineage":["https://openalex.org/I4210149137"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yue Shen","raw_affiliation_strings":["BGI-Shenzhen, Shenzhen\u00a0518083, China","China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China"],"affiliations":[{"raw_affiliation_string":"BGI-Shenzhen, Shenzhen\u00a0518083, China","institution_ids":["https://openalex.org/I100135526"]},{"raw_affiliation_string":"China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China","institution_ids":["https://openalex.org/I4210149137"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100329133","display_name":"Junhua Li","orcid":"https://orcid.org/0000-0001-6784-1873"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I4210149137","display_name":"China National GeneBank","ror":"https://ror.org/03n9hr695","country_code":"CN","type":"archive","lineage":["https://openalex.org/I4210149137"]},{"id":"https://openalex.org/I90610280","display_name":"South China University of Technology","ror":"https://ror.org/0530pts50","country_code":"CN","type":"education","lineage":["https://openalex.org/I90610280"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junhua Li","raw_affiliation_strings":["BGI-Shenzhen, Shenzhen\u00a0518083, China","China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China","South China University of Technology, Guangzhou, Guangdong\u00a0510640, China"],"affiliations":[{"raw_affiliation_string":"BGI-Shenzhen, Shenzhen\u00a0518083, China","institution_ids":["https://openalex.org/I100135526"]},{"raw_affiliation_string":"China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China","institution_ids":["https://openalex.org/I4210149137"]},{"raw_affiliation_string":"South China University of Technology, Guangzhou, Guangdong\u00a0510640, China","institution_ids":["https://openalex.org/I90610280"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100401842","display_name":"Lingchong You","orcid":"https://orcid.org/0000-0003-3725-4007"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lingchong You","raw_affiliation_strings":["Center for Genomic and Computational Biology, Duke University, Durham, NC 27708, USA","Department of Biomedical Engineering, Duke University, Durham, NC 27708, USA","Department of Molecular Genetics and Microbiology, Duke University School of Medicine, Durham, NC 27708, USA"],"affiliations":[{"raw_affiliation_string":"Center for Genomic and Computational Biology, Duke University, Durham, NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Duke University, Durham, NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Molecular Genetics and Microbiology, Duke University School of Medicine, Durham, NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100412749","display_name":"Minfeng Xiao","orcid":"https://orcid.org/0000-0002-0507-7352"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I4210149137","display_name":"China National GeneBank","ror":"https://ror.org/03n9hr695","country_code":"CN","type":"archive","lineage":["https://openalex.org/I4210149137"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Minfeng Xiao","raw_affiliation_strings":["BGI-Shenzhen, Shenzhen\u00a0518083, China","China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China"],"affiliations":[{"raw_affiliation_string":"BGI-Shenzhen, Shenzhen\u00a0518083, China","institution_ids":["https://openalex.org/I100135526"]},{"raw_affiliation_string":"China National Genebank, BGI-Shenzhen, Shenzhen\u00a0518120, China","institution_ids":["https://openalex.org/I4210149137"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5100412749"],"corresponding_institution_ids":["https://openalex.org/I100135526","https://openalex.org/I4210149137"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":22.0042,"has_fulltext":true,"cited_by_count":244,"citation_normalized_percentile":{"value":0.99719783,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"47","issue":"W1","first_page":"W74","last_page":"W80"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/prophage","display_name":"Prophage","score":0.996910572052002},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7863585948944092},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7279480695724487},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5911740660667419},{"id":"https://openalex.org/keywords/bacterial-genome-size","display_name":"Bacterial genome size","score":0.5467487573623657},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5272917747497559},{"id":"https://openalex.org/keywords/coevolution","display_name":"Coevolution","score":0.5090884566307068},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.42820537090301514},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3322097063064575},{"id":"https://openalex.org/keywords/bacteriophage","display_name":"Bacteriophage","score":0.3027438819408417},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.1760154366493225},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13923192024230957},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.13104966282844543},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1213269829750061}],"concepts":[{"id":"https://openalex.org/C73445445","wikidata":"https://www.wikidata.org/wiki/Q1712327","display_name":"Prophage","level":5,"score":0.996910572052002},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7863585948944092},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7279480695724487},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5911740660667419},{"id":"https://openalex.org/C3742359","wikidata":"https://www.wikidata.org/wiki/Q4839988","display_name":"Bacterial genome size","level":4,"score":0.5467487573623657},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5272917747497559},{"id":"https://openalex.org/C33009525","wikidata":"https://www.wikidata.org/wiki/Q208841","display_name":"Coevolution","level":2,"score":0.5090884566307068},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.42820537090301514},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3322097063064575},{"id":"https://openalex.org/C2776441376","wikidata":"https://www.wikidata.org/wiki/Q165028","display_name":"Bacteriophage","level":4,"score":0.3027438819408417},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.1760154366493225},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13923192024230957},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.13104966282844543},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1213269829750061},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039002","descriptor_name":"Prophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D039002","descriptor_name":"Prophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D039002","descriptor_name":"Prophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkz380","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz380","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W74/28880097/gkz380.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:31114893","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31114893","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:5577304","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6602508","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkz380","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz380","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W74/28880097/gkz380.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7653427773","display_name":null,"funder_award_id":"31601073","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2944870141.pdf","grobid_xml":"https://content.openalex.org/works/W2944870141.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1534386309","https://openalex.org/W1966912927","https://openalex.org/W1997846009","https://openalex.org/W2012427120","https://openalex.org/W2016555214","https://openalex.org/W2089221788","https://openalex.org/W2100363512","https://openalex.org/W2101291993","https://openalex.org/W2104005232","https://openalex.org/W2106090237","https://openalex.org/W2117131162","https://openalex.org/W2119859604","https://openalex.org/W2130124027","https://openalex.org/W2134579443","https://openalex.org/W2136310634","https://openalex.org/W2142678478","https://openalex.org/W2151880722","https://openalex.org/W2156125289","https://openalex.org/W2166820820","https://openalex.org/W2173732482","https://openalex.org/W2306404099","https://openalex.org/W2345791363","https://openalex.org/W2526038422","https://openalex.org/W2570615709","https://openalex.org/W2598905397","https://openalex.org/W2610162525","https://openalex.org/W2619635624","https://openalex.org/W2732139758","https://openalex.org/W2781496159","https://openalex.org/W2790114318","https://openalex.org/W2886112809","https://openalex.org/W2897780900","https://openalex.org/W2901652748","https://openalex.org/W4211043921"],"related_works":["https://openalex.org/W2081926956","https://openalex.org/W2079934389","https://openalex.org/W4366771508","https://openalex.org/W2158406706","https://openalex.org/W4211043921","https://openalex.org/W1123777192","https://openalex.org/W2146966776","https://openalex.org/W2990021576","https://openalex.org/W4391173990","https://openalex.org/W4390111925"],"abstract_inverted_index":{"Identifying":[0],"active":[1,34,67],"prophages":[2,35,68],"is":[3,79,126],"critical":[4],"for":[5,21,33,87],"studying":[6],"coevolution":[7],"of":[8,40,75,110,121],"phage":[9,13,122],"and":[10,15,17,46,117],"bacteria,":[11],"investigating":[12],"physiology":[14],"biochemistry,":[16],"engineering":[18],"designer":[19],"phages":[20,89],"diverse":[22],"applications.":[23],"We":[24],"present":[25],"Prophage":[26,93,124],"Hunter,":[27],"a":[28,54,96],"tool":[29],"aimed":[30],"at":[31,129],"hunting":[32],"from":[36,104],"whole":[37],"genome":[38],"assembly":[39],"bacteria.":[41],"Combining":[42],"sequence":[43],"similarity-based":[44],"matching":[45,78],"genetic":[47],"features-based":[48],"machine":[49],"learning":[50],"classification,":[51],"we":[52],"developed":[53],"novel":[55,88],"scoring":[56],"system":[57],"that":[58,83],"exhibits":[59],"higher":[60,85],"accuracy":[61],"than":[62],"current":[63],"tools":[64],"in":[65],"predicting":[66],"on":[69],"the":[70,108,111,119],"validation":[71],"datasets.":[72],"The":[73],"option":[74],"skipping":[76],"similarity":[77],"also":[80],"available":[81,128],"so":[82],"there's":[84],"chance":[86],"to":[90,100],"be":[91],"discovered.":[92],"Hunter":[94,125],"provides":[95],"one-stop":[97],"web":[98],"service":[99],"extract":[101],"prophage":[102],"genomes":[103],"bacterial":[105],"genomes,":[106],"evaluate":[107],"activity":[109],"prophages,":[112],"identify":[113],"phylogenetically":[114],"related":[115],"phages,":[116],"annotate":[118],"function":[120],"proteins.":[123],"freely":[127],"https://pro-hunter.bgi.com/.":[130]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":18},{"year":2024,"cited_by_count":51},{"year":2023,"cited_by_count":45},{"year":2022,"cited_by_count":46},{"year":2021,"cited_by_count":53},{"year":2020,"cited_by_count":16},{"year":2019,"cited_by_count":8}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}