{"id":"https://openalex.org/W2940690307","doi":"https://doi.org/10.1093/nar/gkz303","title":"NGPhylogeny.fr: new generation phylogenetic services for non-specialists","display_name":"NGPhylogeny.fr: new generation phylogenetic services for non-specialists","publication_year":2019,"publication_date":"2019-04-17","ids":{"openalex":"https://openalex.org/W2940690307","doi":"https://doi.org/10.1093/nar/gkz303","mag":"2940690307","pmid":"https://pubmed.ncbi.nlm.nih.gov/31028399"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkz303","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz303","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W260/28879782/gkz303.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/47/W1/W260/28879782/gkz303.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087433412","display_name":"Fr\u00e9d\u00e9ric Lemoine","orcid":"https://orcid.org/0000-0001-9576-4449"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fr\u00e9d\u00e9ric Lemoine","raw_affiliation_strings":["Hub Bioinformatique et Biostatistique, C3BI USR 3756, Institut Pasteur & CNRS, Paris, France","Unit\u00e9 Bioinformatique Evolutive, C3BI USR 3756, Institut Pasteur & CNRS, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hub Bioinformatique et Biostatistique, C3BI USR 3756, Institut Pasteur & CNRS, Paris, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Unit\u00e9 Bioinformatique Evolutive, C3BI USR 3756, Institut Pasteur & CNRS, Paris, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066381589","display_name":"Damien Correia","orcid":"https://orcid.org/0009-0007-2859-5076"},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Damien Correia","raw_affiliation_strings":["Laboratoire de Recherche en Informatique, Universit\u00e9 Paris-Sud, CNRS UMR 8623, Universit\u00e9 Paris-Saclay, Orsay, France","M\u00e9thodes et Algorithmes pour la Bioinformatique, LIRMM UMR 5506, Universit\u00e9 de Montpellier & CNRS, Montpellier, France","Unit\u00e9 Bioinformatique Evolutive, C3BI USR 3756, Institut Pasteur & CNRS, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Recherche en Informatique, Universit\u00e9 Paris-Sud, CNRS UMR 8623, Universit\u00e9 Paris-Saclay, Orsay, France","institution_ids":["https://openalex.org/I4210144804","https://openalex.org/I277688954","https://openalex.org/I102197404","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"M\u00e9thodes et Algorithmes pour la Bioinformatique, LIRMM UMR 5506, Universit\u00e9 de Montpellier & CNRS, Montpellier, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I1294671590","https://openalex.org/I4210101743"]},{"raw_affiliation_string":"Unit\u00e9 Bioinformatique Evolutive, C3BI USR 3756, Institut Pasteur & CNRS, Paris, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088743342","display_name":"Vincent Lefort","orcid":"https://orcid.org/0000-0003-2864-4783"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Vincent Lefort","raw_affiliation_strings":["M\u00e9thodes et Algorithmes pour la Bioinformatique, LIRMM UMR 5506, Universit\u00e9 de Montpellier & CNRS, Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"M\u00e9thodes et Algorithmes pour la Bioinformatique, LIRMM UMR 5506, Universit\u00e9 de Montpellier & CNRS, Montpellier, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I1294671590","https://openalex.org/I4210101743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004627077","display_name":"Olivia Doppelt\u2010Azeroual","orcid":"https://orcid.org/0000-0001-5451-5171"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivia Doppelt-Azeroual","raw_affiliation_strings":["Hub Bioinformatique et Biostatistique, C3BI USR 3756, Institut Pasteur & CNRS, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hub Bioinformatique et Biostatistique, C3BI USR 3756, Institut Pasteur & CNRS, Paris, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091794640","display_name":"Fabien Mareuil","orcid":"https://orcid.org/0000-0002-3832-9157"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fabien Mareuil","raw_affiliation_strings":["Hub Bioinformatique et Biostatistique, C3BI USR 3756, Institut Pasteur & CNRS, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hub Bioinformatique et Biostatistique, C3BI USR 3756, Institut Pasteur & CNRS, Paris, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067733747","display_name":"Sarah Cohen\u2010Boulakia","orcid":"https://orcid.org/0000-0002-7439-1441"},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sarah Cohen-Boulakia","raw_affiliation_strings":["Laboratoire de Recherche en Informatique, Universit\u00e9 Paris-Sud, CNRS UMR 8623, Universit\u00e9 Paris-Saclay, Orsay, France"],"raw_orcid":"https://orcid.org/0000-0002-7439-1441","affiliations":[{"raw_affiliation_string":"Laboratoire de Recherche en Informatique, Universit\u00e9 Paris-Sud, CNRS UMR 8623, Universit\u00e9 Paris-Saclay, Orsay, France","institution_ids":["https://openalex.org/I4210144804","https://openalex.org/I277688954","https://openalex.org/I102197404","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078068308","display_name":"Olivier Gascuel","orcid":"https://orcid.org/0000-0002-9412-9723"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivier Gascuel","raw_affiliation_strings":["M\u00e9thodes et Algorithmes pour la Bioinformatique, LIRMM UMR 5506, Universit\u00e9 de Montpellier & CNRS, Montpellier, France","Unit\u00e9 Bioinformatique Evolutive, C3BI USR 3756, Institut Pasteur & CNRS, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"M\u00e9thodes et Algorithmes pour la Bioinformatique, LIRMM UMR 5506, Universit\u00e9 de Montpellier & CNRS, Montpellier, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I1294671590","https://openalex.org/I4210101743"]},{"raw_affiliation_string":"Unit\u00e9 Bioinformatique Evolutive, C3BI USR 3756, Institut Pasteur & CNRS, Paris, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":31.1165,"has_fulltext":true,"cited_by_count":933,"citation_normalized_percentile":{"value":0.99848291,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"47","issue":"W1","first_page":"W260","last_page":"W265"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.949999988079071,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8488640785217285},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.652888298034668},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5222281217575073},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.49906301498413086},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.4805629551410675},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4767528474330902},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.41150668263435364},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2392922341823578},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.12939897179603577}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8488640785217285},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.652888298034668},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5222281217575073},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.49906301498413086},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.4805629551410675},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4767528474330902},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.41150668263435364},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2392922341823578},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.12939897179603577},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkz303","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz303","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W260/28879782/gkz303.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:31028399","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31028399","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:HAL:hal-02341225v1","is_oa":false,"landing_page_url":"https://hal.science/hal-02341225","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research, 2019, 47 (W1), pp.W260-W265. ⟨10.1093/nar/gkz303⟩","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:5577290","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6602494","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkz303","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz303","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W260/28879782/gkz303.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5899999737739563,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G2991422839","display_name":null,"funder_award_id":"PIA/ANR-16-CONV-0005","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5196283127","display_name":null,"funder_award_id":"ANR-16-CONV-0005","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5802621812","display_name":null,"funder_award_id":"ANR-11-INBS","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6068764742","display_name":null,"funder_award_id":"ANR-11-INBS-0013","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2940690307.pdf","grobid_xml":"https://content.openalex.org/works/W2940690307.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1963957860","https://openalex.org/W1977358834","https://openalex.org/W2004798786","https://openalex.org/W2028302194","https://openalex.org/W2031611770","https://openalex.org/W2041504672","https://openalex.org/W2055043387","https://openalex.org/W2075563069","https://openalex.org/W2109320260","https://openalex.org/W2111211467","https://openalex.org/W2115888213","https://openalex.org/W2127322768","https://openalex.org/W2127556561","https://openalex.org/W2132926880","https://openalex.org/W2136482257","https://openalex.org/W2140733984","https://openalex.org/W2144610372","https://openalex.org/W2148698435","https://openalex.org/W2149531726","https://openalex.org/W2151692850","https://openalex.org/W2157701114","https://openalex.org/W2160378127","https://openalex.org/W2161973008","https://openalex.org/W2164541345","https://openalex.org/W2170587743","https://openalex.org/W2227624316","https://openalex.org/W2336330109","https://openalex.org/W2466387107","https://openalex.org/W2610994034","https://openalex.org/W2724155158","https://openalex.org/W2799524357","https://openalex.org/W2801900613","https://openalex.org/W2883315617","https://openalex.org/W2917207851"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W188202134","https://openalex.org/W2397952901","https://openalex.org/W2362218761","https://openalex.org/W2062354928","https://openalex.org/W2113708670","https://openalex.org/W2088120817"],"abstract_inverted_index":{"Phylogeny.fr,":[0],"created":[1],"in":[2,57,72,87,135,172],"2008,":[3],"has":[4,39],"been":[5,32,139],"designed":[6,86],"to":[7,53],"facilitate":[8],"the":[9,35,88],"execution":[10],"of":[11,37,59,105,123,174,176,180],"phylogenetic":[12],"workflows,":[13,62,136],"and":[14,29,34,61,65,116,119,130,159,178,191],"is":[15,183,192],"nowadays":[16],"widely":[17],"used.":[18],"However,":[19],"since":[20],"its":[21,48],"development,":[22],"user":[23],"needs":[24],"have":[25,31,138],"evolved,":[26],"new":[27,44,84],"tools":[28,60,71,100],"workflows":[30,169],"published,":[33],"number":[36,175],"jobs":[38,177],"increased":[40],"dramatically,":[41],"thus":[42],"promoting":[43],"practices,":[45],"which":[46,137,167],"motivated":[47],"refactoring.":[49],"We":[50],"developed":[51],"NGPhylogeny.fr":[52,182],"be":[54,145],"more":[55,66,170],"flexible":[56],"terms":[58,173],"easily":[63],"installable,":[64],"scalable.":[67],"It":[68],"integrates":[69],"numerous":[70],"their":[73],"latest":[74],"version":[75],"(e.g.":[76,92],"TNT,":[77],"FastME,":[78],"MrBayes,":[79],"etc.)":[80],"as":[81,83],"well":[82],"ones":[85],"last":[89],"ten":[90],"years":[91],"PhyML,":[93],"SMS,":[94],"FastTree,":[95],"trimAl,":[96],"BOOSTER,":[97],"etc.).":[98],"These":[99],"cover":[101],"a":[102,120],"large":[103,121],"range":[104],"usage":[106],"(sequence":[107],"searching,":[108],"multiple":[109],"sequence":[110],"alignment,":[111],"model":[112],"selection,":[113],"tree":[114,117],"inference":[115],"drawing)":[118],"panel":[122],"standard":[124],"methods":[125],"(distance,":[126],"parsimony,":[127],"maximum":[128],"likelihood":[129],"Bayesian).":[131],"They":[132],"are":[133,149,157],"integrated":[134],"already":[140],"configured":[141],"('One":[142],"click'),":[143],"can":[144],"customized":[146],"('Advanced'),":[147],"or":[148,188],"built":[150],"from":[151],"scratch":[152],"('A":[153],"la":[154],"carte').":[155],"Workflows":[156],"managed":[158],"run":[160],"by":[161],"an":[162],"underlying":[163],"Galaxy":[164],"workflow":[165],"system,":[166],"makes":[168],"scalable":[171],"size":[179],"data.":[181],"deployable":[184],"on":[185],"any":[186],"server":[187],"personal":[189],"computer,":[190],"freely":[193],"accessible":[194],"at":[195],"https://ngphylogeny.fr.":[196]},"counts_by_year":[{"year":2026,"cited_by_count":81},{"year":2025,"cited_by_count":181},{"year":2024,"cited_by_count":169},{"year":2023,"cited_by_count":138},{"year":2022,"cited_by_count":125},{"year":2021,"cited_by_count":132},{"year":2020,"cited_by_count":96},{"year":2019,"cited_by_count":11}],"updated_date":"2026-06-17T08:01:34.144755","created_date":"2025-10-10T00:00:00"}