{"id":"https://openalex.org/W2950804227","doi":"https://doi.org/10.1093/nar/gkz299","title":"Updated MS\u00b2PIP web server delivers fast and accurate MS\u00b2 peak intensity prediction for multiple fragmentation methods, instruments and labeling techniques","display_name":"Updated MS\u00b2PIP web server delivers fast and accurate MS\u00b2 peak intensity prediction for multiple fragmentation methods, instruments and labeling techniques","publication_year":2019,"publication_date":"2019-04-24","ids":{"openalex":"https://openalex.org/W2950804227","doi":"https://doi.org/10.1093/nar/gkz299","mag":"2950804227","pmid":"https://pubmed.ncbi.nlm.nih.gov/31028400"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkz299","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz299","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W295/28880268/gkz299.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/47/W1/W295/28880268/gkz299.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050188991","display_name":"Ralf Gabriels","orcid":"https://orcid.org/0000-0002-1679-1711"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210151194","display_name":"VIB-UGent Center for Medical Biotechnology","ror":"https://ror.org/04hbttm44","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210151194"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Ralf Gabriels","raw_affiliation_strings":["Department of Biomolecular Medicine, Ghent University, Ghent, Belgium","VIB-UGent Center for Medical Biotechnology, VIB, A. Baertsoenkaai 3, B9000 Ghent, Belgium"],"raw_orcid":"https://orcid.org/0000-0002-1679-1711","affiliations":[{"raw_affiliation_string":"Department of Biomolecular Medicine, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"VIB-UGent Center for Medical Biotechnology, VIB, A. Baertsoenkaai 3, B9000 Ghent, Belgium","institution_ids":["https://openalex.org/I4210151194"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038356859","display_name":"Lennart Martens","orcid":"https://orcid.org/0000-0003-4277-658X"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210151194","display_name":"VIB-UGent Center for Medical Biotechnology","ror":"https://ror.org/04hbttm44","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210151194"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Lennart Martens","raw_affiliation_strings":["Department of Biomolecular Medicine, Ghent University, Ghent, Belgium","VIB-UGent Center for Medical Biotechnology, VIB, A. Baertsoenkaai 3, B9000 Ghent, Belgium"],"raw_orcid":"https://orcid.org/0000-0003-4277-658X","affiliations":[{"raw_affiliation_string":"Department of Biomolecular Medicine, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"VIB-UGent Center for Medical Biotechnology, VIB, A. Baertsoenkaai 3, B9000 Ghent, Belgium","institution_ids":["https://openalex.org/I4210151194"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068472419","display_name":"Sven Degroeve","orcid":"https://orcid.org/0000-0001-8349-3370"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210151194","display_name":"VIB-UGent Center for Medical Biotechnology","ror":"https://ror.org/04hbttm44","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210151194"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Sven Degroeve","raw_affiliation_strings":["Department of Biomolecular Medicine, Ghent University, Ghent, Belgium","VIB-UGent Center for Medical Biotechnology, VIB, A. Baertsoenkaai 3, B9000 Ghent, Belgium"],"raw_orcid":"https://orcid.org/0000-0001-8349-3370","affiliations":[{"raw_affiliation_string":"Department of Biomolecular Medicine, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"VIB-UGent Center for Medical Biotechnology, VIB, A. Baertsoenkaai 3, B9000 Ghent, Belgium","institution_ids":["https://openalex.org/I4210151194"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5038356859"],"corresponding_institution_ids":["https://openalex.org/I32597200","https://openalex.org/I4210151194"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":8.2925,"has_fulltext":false,"cited_by_count":108,"citation_normalized_percentile":{"value":0.9875714,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"47","issue":"W1","first_page":"W295","last_page":"W299"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fragmentation","display_name":"Fragmentation (computing)","score":0.7779420614242554},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.7171968221664429},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5749481320381165},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.5520272850990295},{"id":"https://openalex.org/keywords/mass-spectrometry","display_name":"Mass spectrometry","score":0.5236380100250244},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.5172951221466064},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.48101386427879333},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3595598042011261},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3410685658454895},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1917687952518463},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.19146299362182617},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.17241910099983215},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.16904601454734802},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.1163695752620697},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08499264717102051}],"concepts":[{"id":"https://openalex.org/C191015642","wikidata":"https://www.wikidata.org/wiki/Q1132459","display_name":"Fragmentation (computing)","level":2,"score":0.7779420614242554},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.7171968221664429},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5749481320381165},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.5520272850990295},{"id":"https://openalex.org/C162356407","wikidata":"https://www.wikidata.org/wiki/Q180809","display_name":"Mass spectrometry","level":2,"score":0.5236380100250244},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.5172951221466064},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48101386427879333},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3595598042011261},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3410685658454895},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1917687952518463},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.19146299362182617},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.17241910099983215},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.16904601454734802},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.1163695752620697},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08499264717102051}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010446","descriptor_name":"Peptide Fragments","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D010446","descriptor_name":"Peptide Fragments","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D010446","descriptor_name":"Peptide Fragments","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D010748","descriptor_name":"Phosphopeptides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D010748","descriptor_name":"Phosphopeptides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D010748","descriptor_name":"Phosphopeptides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013194","descriptor_name":"Staining and Labeling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013194","descriptor_name":"Staining and Labeling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013194","descriptor_name":"Staining and Labeling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkz299","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz299","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W295/28880268/gkz299.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:31028400","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31028400","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:archive.ugent.be:8616058","is_oa":true,"landing_page_url":"https://biblio.ugent.be/publication/8616058","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1362-4962","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:5577292","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6602496","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkz299","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz299","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W295/28880268/gkz299.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6950206011","display_name":null,"funder_award_id":"823839","funder_id":"https://openalex.org/F4320335254","funder_display_name":"Horizon 2020"},{"id":"https://openalex.org/G7680105020","display_name":"A novel, data driven-paradigm for the sensitive identification of phosphopeptides","funder_award_id":"1S50918N","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G7729982837","display_name":"A jump start for metaproteomics informatics","funder_award_id":"G042518N","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"}],"funders":[{"id":"https://openalex.org/F4320321730","display_name":"Fonds Wetenschappelijk Onderzoek","ror":"https://ror.org/03qtxy027"},{"id":"https://openalex.org/F4320335254","display_name":"Horizon 2020","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2950804227.pdf"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1635348144","https://openalex.org/W1737143051","https://openalex.org/W1997550123","https://openalex.org/W2017064873","https://openalex.org/W2027222148","https://openalex.org/W2028673251","https://openalex.org/W2045117578","https://openalex.org/W2048280438","https://openalex.org/W2057761395","https://openalex.org/W2120016245","https://openalex.org/W2139096442","https://openalex.org/W2141091417","https://openalex.org/W2295598076","https://openalex.org/W2466510791","https://openalex.org/W2510167837","https://openalex.org/W2555937343","https://openalex.org/W2580819151","https://openalex.org/W2606003418","https://openalex.org/W2778352471","https://openalex.org/W2802279743","https://openalex.org/W2806145710","https://openalex.org/W2873517389","https://openalex.org/W2886511151","https://openalex.org/W2888985586","https://openalex.org/W2899760200","https://openalex.org/W2952971539","https://openalex.org/W3102476541","https://openalex.org/W6654593535"],"related_works":["https://openalex.org/W1997209091","https://openalex.org/W2003827594","https://openalex.org/W1989087147","https://openalex.org/W1971760828","https://openalex.org/W2141977832","https://openalex.org/W2091447320","https://openalex.org/W2130134604","https://openalex.org/W2097586012","https://openalex.org/W2169364714","https://openalex.org/W2368425549"],"abstract_inverted_index":{"MS\u00b2PIP":[0,22,132],"is":[1,76,135],"a":[2,11,128],"data-driven":[3],"tool":[4,35],"that":[5],"accurately":[6],"predicts":[7],"peak":[8],"intensities":[9],"for":[10,46,56,62,65,69,92],"given":[12],"peptide's":[13],"fragmentation":[14,74],"mass":[15,60],"spectrum.":[16],"Since":[17],"the":[18,21,34,37,43,57,73,89,102,113],"release":[19],"of":[20,81,120],"web":[23,38,114,133],"server":[24,134],"in":[25,79,127],"2015,":[26],"we":[27,51],"have":[28,52,98,110],"brought":[29],"significant":[30],"updates":[31],"to":[32,42,106,122],"both":[33],"and":[36,48,68,109],"server.":[39],"In":[40],"addition":[41],"original":[44],"models":[45,55,86],"CID":[47],"HCD":[49],"fragmentation,":[50],"added":[53],"specialized":[54],"TripleTOF":[58],"5600+":[59],"spectrometer,":[61],"TMT-labeled":[63],"peptides,":[64,67],"iTRAQ-labeled":[66,70],"phosphopeptides.":[71],"Because":[72],"pattern":[75],"heavily":[77],"altered":[78],"each":[80],"these":[82,84],"cases,":[83],"additional":[85],"greatly":[87],"improve":[88],"prediction":[90],"accuracy":[91],"their":[93],"corresponding":[94],"data":[95],"types.":[96],"We":[97],"also":[99],"substantially":[100],"reduced":[101],"computational":[103],"resources":[104],"required":[105],"run":[107],"MS\u00b2PIP,":[108],"completely":[111],"rebuilt":[112],"server,":[115],"which":[116],"now":[117],"allows":[118],"predictions":[119],"up":[121],"100":[123],"000":[124],"peptide":[125],"sequences":[126],"single":[129],"request.":[130],"The":[131],"freely":[136],"available":[137],"at":[138],"https://iomics.ugent.be/ms2pip/.":[139]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":17},{"year":2021,"cited_by_count":23},{"year":2020,"cited_by_count":22},{"year":2019,"cited_by_count":9}],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}