{"id":"https://openalex.org/W2938111698","doi":"https://doi.org/10.1093/nar/gkz282","title":"AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential","display_name":"AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential","publication_year":2019,"publication_date":"2019-04-11","ids":{"openalex":"https://openalex.org/W2938111698","doi":"https://doi.org/10.1093/nar/gkz282","mag":"2938111698","pmid":"https://pubmed.ncbi.nlm.nih.gov/30997504"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkz282","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz282","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W276/28880023/gkz282.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/47/W1/W276/28880023/gkz282.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027781296","display_name":"Mohammad Alanjary","orcid":"https://orcid.org/0000-0001-8420-1325"},"institutions":[{"id":"https://openalex.org/I4210115305","display_name":"German Center for Infection Research","ror":"https://ror.org/028s4q594","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210115305","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mohammad Alanjary","raw_affiliation_strings":["German Centre for Infection Research (DZIF), Partner Site T\u00fcbingen, T\u00fcbingen, Germany","Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"German Centre for Infection Research (DZIF), Partner Site T\u00fcbingen, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210115305"]},{"raw_affiliation_string":"Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085253303","display_name":"Kat Steinke","orcid":"https://orcid.org/0000-0003-1951-3001"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]},{"id":"https://openalex.org/I4210115305","display_name":"German Center for Infection Research","ror":"https://ror.org/028s4q594","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210115305","https://openalex.org/I4405256427"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kat Steinke","raw_affiliation_strings":["German Centre for Infection Research (DZIF), Partner Site T\u00fcbingen, T\u00fcbingen, Germany","Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"German Centre for Infection Research (DZIF), Partner Site T\u00fcbingen, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210115305"]},{"raw_affiliation_string":"Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058692862","display_name":"Nadine Ziemert","orcid":"https://orcid.org/0000-0002-7264-1857"},"institutions":[{"id":"https://openalex.org/I4210115305","display_name":"German Center for Infection Research","ror":"https://ror.org/028s4q594","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210115305","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Nadine Ziemert","raw_affiliation_strings":["German Centre for Infection Research (DZIF), Partner Site T\u00fcbingen, T\u00fcbingen, Germany","Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"German Centre for Infection Research (DZIF), Partner Site T\u00fcbingen, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I4210115305"]},{"raw_affiliation_string":"Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, University of T\u00fcbingen, T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5058692862"],"corresponding_institution_ids":["https://openalex.org/I4210115305","https://openalex.org/I8087733"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":14.4306,"has_fulltext":true,"cited_by_count":478,"citation_normalized_percentile":{"value":0.99395685,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"47","issue":"W1","first_page":"W276","last_page":"W282"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9789000153541565,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9448000192642212,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.954968273639679},{"id":"https://openalex.org/keywords/locus","display_name":"Locus (genetics)","score":0.492107093334198},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4766702950000763},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.4401649236679077},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3603670597076416},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3172060549259186},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.2787953019142151},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.277529776096344},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13841664791107178},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.12542089819908142}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.954968273639679},{"id":"https://openalex.org/C84597430","wikidata":"https://www.wikidata.org/wiki/Q106227","display_name":"Locus (genetics)","level":3,"score":0.492107093334198},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4766702950000763},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.4401649236679077},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3603670597076416},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3172060549259186},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.2787953019142151},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.277529776096344},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13841664791107178},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.12542089819908142}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004269","descriptor_name":"DNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058885","descriptor_name":"Multilocus Sequence Typing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058885","descriptor_name":"Multilocus Sequence Typing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058885","descriptor_name":"Multilocus Sequence Typing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058885","descriptor_name":"Multilocus Sequence Typing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkz282","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz282","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W276/28880023/gkz282.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:30997504","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30997504","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:5577250","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6602446","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkz282","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz282","pdf_url":"https://academic.oup.com/nar/article-pdf/47/W1/W276/28880023/gkz282.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.5600000023841858}],"awards":[{"id":"https://openalex.org/G1395975458","display_name":null,"funder_award_id":"DZIF 9.704","funder_id":"https://openalex.org/F4320311052","funder_display_name":"Deutsches Zentrum f\u00fcr Infektionsforschung"}],"funders":[{"id":"https://openalex.org/F4320311052","display_name":"Deutsches Zentrum f\u00fcr Infektionsforschung","ror":"https://ror.org/028s4q594"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2938111698.pdf","grobid_xml":"https://content.openalex.org/works/W2938111698.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W97059505","https://openalex.org/W260545600","https://openalex.org/W1988925586","https://openalex.org/W2000800475","https://openalex.org/W2004798786","https://openalex.org/W2012504113","https://openalex.org/W2012598184","https://openalex.org/W2023189810","https://openalex.org/W2034285706","https://openalex.org/W2046183549","https://openalex.org/W2053940732","https://openalex.org/W2055043387","https://openalex.org/W2060268159","https://openalex.org/W2071465766","https://openalex.org/W2084761838","https://openalex.org/W2097706568","https://openalex.org/W2103837111","https://openalex.org/W2110335151","https://openalex.org/W2111373249","https://openalex.org/W2111647009","https://openalex.org/W2115888213","https://openalex.org/W2116206245","https://openalex.org/W2116210362","https://openalex.org/W2123006317","https://openalex.org/W2134375163","https://openalex.org/W2135621733","https://openalex.org/W2136101247","https://openalex.org/W2142148278","https://openalex.org/W2151350595","https://openalex.org/W2160378127","https://openalex.org/W2162003919","https://openalex.org/W2162371815","https://openalex.org/W2165012549","https://openalex.org/W2166865790","https://openalex.org/W2168696662","https://openalex.org/W2170362744","https://openalex.org/W2224056471","https://openalex.org/W2277953252","https://openalex.org/W2335901076","https://openalex.org/W2336400828","https://openalex.org/W2395652404","https://openalex.org/W2609551972","https://openalex.org/W2614081736","https://openalex.org/W2786738307","https://openalex.org/W2794904294","https://openalex.org/W2801361050","https://openalex.org/W2805599849","https://openalex.org/W2883865941","https://openalex.org/W2889019390","https://openalex.org/W2895788262","https://openalex.org/W2950150251","https://openalex.org/W2950912511","https://openalex.org/W2951464304","https://openalex.org/W6674647444"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2050726229","https://openalex.org/W2189071442","https://openalex.org/W2330241370","https://openalex.org/W1868037109","https://openalex.org/W1028235294","https://openalex.org/W2162330746","https://openalex.org/W1498263855","https://openalex.org/W1968745149","https://openalex.org/W4233646147"],"abstract_inverted_index":{"Understanding":[0],"the":[1,43],"evolutionary":[2],"background":[3],"of":[4,14,57,162,180],"a":[5,11,55,97,127,177],"bacterial":[6],"isolate":[7],"has":[8],"applications":[9],"for":[10,28],"wide":[12,178],"range":[13,179],"research.":[15],"However":[16],"generating":[17],"an":[18],"accurate":[19,67],"species":[20,29,44,68,117,141],"phylogeny":[21],"remains":[22,32],"challenging.":[23],"Reliance":[24],"on":[25,169],"16S":[26],"rDNA":[27],"identification":[30],"currently":[31,155],"popular.":[33],"Unfortunately,":[34],"this":[35,103,119],"widespread":[36],"method":[37],"suffers":[38],"from":[39,154],"low":[40],"resolution":[41],"at":[42],"level":[45],"due":[46],"to":[47,64,95,101,114,148,182,190],"high":[48],"sequence":[49,124],"conservation.":[50],"Currently,":[51],"there":[52],"is":[53],"now":[54],"wealth":[56],"genomic":[58],"data":[59],"that":[60],"can":[61,159],"be":[62],"used":[63],"yield":[65],"more":[66,172,187],"designations":[69,143],"via":[70],"modern":[71],"phylogenetic":[72,133,185],"methods":[73],"and":[74,84,144,165],"multiple":[75],"genetic":[76],"loci.":[77],"However,":[78],"these":[79],"often":[80],"require":[81],"extensive":[82],"expertise":[83],"time.":[85],"The":[86,131],"Automated":[87],"Multi-Locus":[88,110],"Species":[89],"Tree":[90],"(autoMLST)":[91],"was":[92],"thus":[93],"developed":[94],"provide":[96],"rapid":[98],"'one-click'":[99],"pipeline":[100],"simplify":[102],"workflow":[104],"at:":[105],"https://automlst.ziemertlab.com.":[106],"This":[107,175],"server":[108],"utilizes":[109],"Sequence":[111],"Analysis":[112],"(MLSA)":[113],"produce":[115],"high-resolution":[116],"trees;":[118],"does":[120],"not":[121],"preform":[122],"multi-locus":[123],"typing":[125],"(MLST),":[126],"related":[128],"classification":[129],"method.":[130],"resulting":[132],"tree":[134],"also":[135],"includes":[136],"helpful":[137],"annotations,":[138],"such":[139],"as":[140],"clade":[142],"secondary":[145],"metabolite":[146],"counts":[147],"aid":[149],"natural":[150],"product":[151],"prospecting.":[152],"Distinct":[153],"available":[156],"web-interfaces,":[157],"autoMLST":[158],"automate":[160],"selection":[161],"reference":[163],"genomes":[164],"out-group":[166],"organisms":[167],"based":[168],"one":[170],"or":[171],"query":[173],"genomes.":[174],"enables":[176],"researchers":[181],"perform":[183],"rigorous":[184],"analyses":[186],"rapidly":[188],"compared":[189],"manual":[191],"MLSA":[192],"workflows.":[193]},"counts_by_year":[{"year":2026,"cited_by_count":24},{"year":2025,"cited_by_count":87},{"year":2024,"cited_by_count":99},{"year":2023,"cited_by_count":100},{"year":2022,"cited_by_count":55},{"year":2021,"cited_by_count":67},{"year":2020,"cited_by_count":32},{"year":2019,"cited_by_count":14}],"updated_date":"2026-04-23T09:07:50.710637","created_date":"2025-10-10T00:00:00"}
