{"id":"https://openalex.org/W2988126442","doi":"https://doi.org/10.1093/nar/gkz1062","title":"New developments on the Encyclopedia of DNA Elements (ENCODE) data portal","display_name":"New developments on the Encyclopedia of DNA Elements (ENCODE) data portal","publication_year":2019,"publication_date":"2019-10-25","ids":{"openalex":"https://openalex.org/W2988126442","doi":"https://doi.org/10.1093/nar/gkz1062","mag":"2988126442","pmid":"https://pubmed.ncbi.nlm.nih.gov/31713622"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkz1062","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz1062","pdf_url":"https://watermark.silverchair.com/gkz1062.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAqEwggKdBgkqhkiG9w0BBwagggKOMIICigIBADCCAoMGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQM5smHFsiXfpzMPKExAgEQgIICVLfuzeq84_8D2ClyUXkXFBepJtvC6lpMmAZueKlmovrcmOgvdDfdDiW_kKzQ8slhrNpXVzRZ-8JfelalZkZbjRmfqWYkH86Hqm2LNgv1oJyBluLibf7ZxdQzFNT8F6Y_S7wPfCBPmCqjIwV9fJei2fo-lW-0AlC_15hGvFx4C47_zEbePZcDtp1xnH098Mh52SU3htR5pic7gvMLgUeMCSXkUD8xPP9DwZiZ7ZziFtp4H8pu0v8K60WN9WVUjq_LE2558ZPYs0iNh-0EJO4f45gHXA9WSz0qAkN6D0ySGkSN9sPcqF2w2T_aT9HTRgMyRd9xwMO7YwKIao4wuit9Su9q2ss5UUh_eldkSz0rCr62i3K7cUWyPbtyqz3AYnpOrJrMygxLSzsGqLWkcgBBcxdIpZUSnk1R16fP8sf9vzs4K5lBIdi6qxZrNVjYJTX_LpopHXHqBqZ_62G9n-RrUaZRXO3yVb7usbb89E2zJz2ixmrJi9MjVDPUHnTsGOWtHV15lBsmhV7wfDHsxOsMusYmQvfrDwXzLeZaGVCYD9gQiZ6-4NONOnZO5p7kBud_yH-KaIXYEE2Y5xKCNhvu3tMwHme7Spf92kRkXoPAAbsLyM31HdGrj18jTAESeDrhNHtCLNCt8wX1Q95QtM0koss8eZnjPcjuw5lZ2mqfcuKEu7fVF6dlXmrOkvDD_54pqma99SvlXAIWqW6cgxwrUnWFE2RhfQbm8x-R36cr2H8tdxTkGHW53xH3htB51NgGcTGDILEZXPB0J3gvtwV0Ha1kLrsm","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://watermark.silverchair.com/gkz1062.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAqEwggKdBgkqhkiG9w0BBwagggKOMIICigIBADCCAoMGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQM5smHFsiXfpzMPKExAgEQgIICVLfuzeq84_8D2ClyUXkXFBepJtvC6lpMmAZueKlmovrcmOgvdDfdDiW_kKzQ8slhrNpXVzRZ-8JfelalZkZbjRmfqWYkH86Hqm2LNgv1oJyBluLibf7ZxdQzFNT8F6Y_S7wPfCBPmCqjIwV9fJei2fo-lW-0AlC_15hGvFx4C47_zEbePZcDtp1xnH098Mh52SU3htR5pic7gvMLgUeMCSXkUD8xPP9DwZiZ7ZziFtp4H8pu0v8K60WN9WVUjq_LE2558ZPYs0iNh-0EJO4f45gHXA9WSz0qAkN6D0ySGkSN9sPcqF2w2T_aT9HTRgMyRd9xwMO7YwKIao4wuit9Su9q2ss5UUh_eldkSz0rCr62i3K7cUWyPbtyqz3AYnpOrJrMygxLSzsGqLWkcgBBcxdIpZUSnk1R16fP8sf9vzs4K5lBIdi6qxZrNVjYJTX_LpopHXHqBqZ_62G9n-RrUaZRXO3yVb7usbb89E2zJz2ixmrJi9MjVDPUHnTsGOWtHV15lBsmhV7wfDHsxOsMusYmQvfrDwXzLeZaGVCYD9gQiZ6-4NONOnZO5p7kBud_yH-KaIXYEE2Y5xKCNhvu3tMwHme7Spf92kRkXoPAAbsLyM31HdGrj18jTAESeDrhNHtCLNCt8wX1Q95QtM0koss8eZnjPcjuw5lZ2mqfcuKEu7fVF6dlXmrOkvDD_54pqma99SvlXAIWqW6cgxwrUnWFE2RhfQbm8x-R36cr2H8tdxTkGHW53xH3htB51NgGcTGDILEZXPB0J3gvtwV0Ha1kLrsm","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078764614","display_name":"Yunhai Luo","orcid":"https://orcid.org/0000-0001-6948-2042"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yunhai Luo","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":"https://orcid.org/0000-0001-6948-2042","affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074536424","display_name":"Benjamin C. Hitz","orcid":"https://orcid.org/0000-0003-3361-3594"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin C Hitz","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":"https://orcid.org/0000-0003-3361-3594","affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021119888","display_name":"Idan Gabdank","orcid":"https://orcid.org/0000-0001-5025-5886"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Idan Gabdank","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":"https://orcid.org/0000-0001-5025-5886","affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053283314","display_name":"Jason A. Hilton","orcid":"https://orcid.org/0000-0002-1196-4871"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason A Hilton","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014592740","display_name":"Meenakshi S. Kagda","orcid":"https://orcid.org/0000-0003-0545-0185"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meenakshi S Kagda","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076467578","display_name":"Bonita R. Lam","orcid":"https://orcid.org/0000-0001-9897-3238"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bonita Lam","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082398282","display_name":"Zachary Myers","orcid":"https://orcid.org/0000-0002-4807-9550"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zachary Myers","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059313879","display_name":"Paul Sud","orcid":"https://orcid.org/0000-0003-1667-4694"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul Sud","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079148335","display_name":"Jennifer Jou","orcid":"https://orcid.org/0000-0003-3065-9183"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer Jou","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064133169","display_name":"Khine Lin","orcid":"https://orcid.org/0000-0002-5222-2428"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Khine Lin","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013194640","display_name":"Ulugbek K. Baymuradov","orcid":"https://orcid.org/0000-0003-4454-1303"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ulugbek K Baymuradov","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005767072","display_name":"Keenan Graham","orcid":"https://orcid.org/0000-0002-3327-6164"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Keenan Graham","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053187442","display_name":"Casey Litton","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Casey Litton","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090930718","display_name":"Stuart R. Miyasato","orcid":"https://orcid.org/0000-0001-5250-8920"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stuart R Miyasato","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063673218","display_name":"J. Seth Strattan","orcid":"https://orcid.org/0000-0001-5094-282X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J Seth Strattan","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":"https://orcid.org/0000-0001-5094-282X","affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000062175","display_name":"Otto Jolanki","orcid":"https://orcid.org/0000-0001-8601-4849"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Otto Jolanki","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052042734","display_name":"Jin-Wook Lee","orcid":"https://orcid.org/0000-0002-3811-0219"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jin-Wook Lee","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079783845","display_name":"Forrest Y. Tanaka","orcid":"https://orcid.org/0000-0002-8649-6611"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Forrest Y Tanaka","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":"https://orcid.org/0000-0002-8649-6611","affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074740060","display_name":"Philip Adenekan","orcid":"https://orcid.org/0000-0002-4999-7847"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philip Adenekan","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040735326","display_name":"Emma O\u2019Neill","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Emma O\u2019Neill","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058567429","display_name":"J. Michael Cherry","orcid":"https://orcid.org/0000-0001-9163-5180"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"J Michael Cherry","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5477, USA","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":21,"corresponding_author_ids":["https://openalex.org/A5058567429"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":9.1458,"has_fulltext":true,"cited_by_count":1090,"citation_normalized_percentile":{"value":0.98677366,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"48","issue":"D1","first_page":"D882","last_page":"D889"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9807999730110168,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9807999730110168,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.9768999814987183,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9620000123977661,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9160283803939819},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.8786269426345825},{"id":"https://openalex.org/keywords/encyclopedia","display_name":"Encyclopedia","score":0.8368581533432007},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5516994595527649},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5513399839401245},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.46847859025001526},{"id":"https://openalex.org/keywords/library-science","display_name":"Library science","score":0.20158717036247253},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18830546736717224},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.12275901436805725}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9160283803939819},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.8786269426345825},{"id":"https://openalex.org/C148863701","wikidata":"https://www.wikidata.org/wiki/Q5292","display_name":"Encyclopedia","level":2,"score":0.8368581533432007},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5516994595527649},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5513399839401245},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.46847859025001526},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.20158717036247253},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18830546736717224},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.12275901436805725}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkz1062","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz1062","pdf_url":"https://watermark.silverchair.com/gkz1062.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAqEwggKdBgkqhkiG9w0BBwagggKOMIICigIBADCCAoMGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQM5smHFsiXfpzMPKExAgEQgIICVLfuzeq84_8D2ClyUXkXFBepJtvC6lpMmAZueKlmovrcmOgvdDfdDiW_kKzQ8slhrNpXVzRZ-8JfelalZkZbjRmfqWYkH86Hqm2LNgv1oJyBluLibf7ZxdQzFNT8F6Y_S7wPfCBPmCqjIwV9fJei2fo-lW-0AlC_15hGvFx4C47_zEbePZcDtp1xnH098Mh52SU3htR5pic7gvMLgUeMCSXkUD8xPP9DwZiZ7ZziFtp4H8pu0v8K60WN9WVUjq_LE2558ZPYs0iNh-0EJO4f45gHXA9WSz0qAkN6D0ySGkSN9sPcqF2w2T_aT9HTRgMyRd9xwMO7YwKIao4wuit9Su9q2ss5UUh_eldkSz0rCr62i3K7cUWyPbtyqz3AYnpOrJrMygxLSzsGqLWkcgBBcxdIpZUSnk1R16fP8sf9vzs4K5lBIdi6qxZrNVjYJTX_LpopHXHqBqZ_62G9n-RrUaZRXO3yVb7usbb89E2zJz2ixmrJi9MjVDPUHnTsGOWtHV15lBsmhV7wfDHsxOsMusYmQvfrDwXzLeZaGVCYD9gQiZ6-4NONOnZO5p7kBud_yH-KaIXYEE2Y5xKCNhvu3tMwHme7Spf92kRkXoPAAbsLyM31HdGrj18jTAESeDrhNHtCLNCt8wX1Q95QtM0koss8eZnjPcjuw5lZ2mqfcuKEu7fVF6dlXmrOkvDD_54pqma99SvlXAIWqW6cgxwrUnWFE2RhfQbm8x-R36cr2H8tdxTkGHW53xH3htB51NgGcTGDILEZXPB0J3gvtwV0Ha1kLrsm","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:31713622","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31713622","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7061942","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7061942","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkz1062","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz1062","pdf_url":"https://watermark.silverchair.com/gkz1062.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAqEwggKdBgkqhkiG9w0BBwagggKOMIICigIBADCCAoMGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQM5smHFsiXfpzMPKExAgEQgIICVLfuzeq84_8D2ClyUXkXFBepJtvC6lpMmAZueKlmovrcmOgvdDfdDiW_kKzQ8slhrNpXVzRZ-8JfelalZkZbjRmfqWYkH86Hqm2LNgv1oJyBluLibf7ZxdQzFNT8F6Y_S7wPfCBPmCqjIwV9fJei2fo-lW-0AlC_15hGvFx4C47_zEbePZcDtp1xnH098Mh52SU3htR5pic7gvMLgUeMCSXkUD8xPP9DwZiZ7ZziFtp4H8pu0v8K60WN9WVUjq_LE2558ZPYs0iNh-0EJO4f45gHXA9WSz0qAkN6D0ySGkSN9sPcqF2w2T_aT9HTRgMyRd9xwMO7YwKIao4wuit9Su9q2ss5UUh_eldkSz0rCr62i3K7cUWyPbtyqz3AYnpOrJrMygxLSzsGqLWkcgBBcxdIpZUSnk1R16fP8sf9vzs4K5lBIdi6qxZrNVjYJTX_LpopHXHqBqZ_62G9n-RrUaZRXO3yVb7usbb89E2zJz2ixmrJi9MjVDPUHnTsGOWtHV15lBsmhV7wfDHsxOsMusYmQvfrDwXzLeZaGVCYD9gQiZ6-4NONOnZO5p7kBud_yH-KaIXYEE2Y5xKCNhvu3tMwHme7Spf92kRkXoPAAbsLyM31HdGrj18jTAESeDrhNHtCLNCt8wX1Q95QtM0koss8eZnjPcjuw5lZ2mqfcuKEu7fVF6dlXmrOkvDD_54pqma99SvlXAIWqW6cgxwrUnWFE2RhfQbm8x-R36cr2H8tdxTkGHW53xH3htB51NgGcTGDILEZXPB0J3gvtwV0Ha1kLrsm","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1850683837","display_name":null,"funder_award_id":"U24 HG009397","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G7381554603","display_name":null,"funder_award_id":"U24 HG009397","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2988126442.pdf","grobid_xml":"https://content.openalex.org/works/W2988126442.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1831401007","https://openalex.org/W1973062929","https://openalex.org/W1977308882","https://openalex.org/W2023386301","https://openalex.org/W2026592619","https://openalex.org/W2077874719","https://openalex.org/W2084160423","https://openalex.org/W2096340575","https://openalex.org/W2103017472","https://openalex.org/W2107580398","https://openalex.org/W2128016314","https://openalex.org/W2150904790","https://openalex.org/W2168909179","https://openalex.org/W2231865019","https://openalex.org/W2247766769","https://openalex.org/W2259938310","https://openalex.org/W2302501749","https://openalex.org/W2335932981","https://openalex.org/W2493763501","https://openalex.org/W2542446037","https://openalex.org/W2613409207","https://openalex.org/W2742061626","https://openalex.org/W2765384588","https://openalex.org/W2765865112","https://openalex.org/W2767826728","https://openalex.org/W2768013244","https://openalex.org/W2773787581","https://openalex.org/W2777064170","https://openalex.org/W2785792383","https://openalex.org/W2790768464","https://openalex.org/W2792499663","https://openalex.org/W2800216985","https://openalex.org/W2809526652","https://openalex.org/W2898204371","https://openalex.org/W2900255713","https://openalex.org/W2950139272","https://openalex.org/W2950595506","https://openalex.org/W2952646324","https://openalex.org/W3186099531","https://openalex.org/W4250359879","https://openalex.org/W4253785452","https://openalex.org/W4320800138"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2348562996","https://openalex.org/W4387776128","https://openalex.org/W3010321750","https://openalex.org/W4394774294","https://openalex.org/W3159833212","https://openalex.org/W4244686159","https://openalex.org/W3011873497","https://openalex.org/W3007654203","https://openalex.org/W2186132238"],"abstract_inverted_index":{"The":[0],"Encyclopedia":[1],"of":[2],"DNA":[3],"Elements":[4],"(ENCODE)":[5],"is":[6,40],"an":[7],"ongoing":[8],"collaborative":[9],"research":[10],"project":[11],"aimed":[12],"at":[13,34],"identifying":[14],"all":[15],"the":[16,20,28,35,45,52,58,63,106],"functional":[17],"elements":[18],"in":[19,56],"human":[21],"and":[22,42,73,85,115,119],"mouse":[23],"genomes.":[24],"Data":[25,47],"generated":[26],"by":[27,44],"ENCODE":[29,36,46,59,67,83,87,103],"consortium":[30],"are":[31],"freely":[32],"accessible":[33],"portal":[37,54,64],"(https://www.encodeproject.org/),":[38],"which":[39],"developed":[41],"maintained":[43],"Coordinating":[48],"Center":[49],"(DCC).":[50],"Since":[51],"initial":[53],"release":[55],"2013,":[57],"DCC":[60],"has":[61],"updated":[62],"to":[65,102],"make":[66],"data":[68,84,89,104,112],"more":[69,116],"findable,":[70],"accessible,":[71],"interoperable":[72],"reusable.":[74],"Here,":[75],"we":[76],"report":[77],"on":[78,105],"recent":[79],"updates,":[80],"including":[81],"new":[82,92],"assays,":[86],"uniform":[88],"processing":[90],"pipelines,":[91],"visualization":[93],"tools,":[94],"a":[95],"dataset":[96],"cart":[97],"feature,":[98],"unrestricted":[99],"public":[100],"access":[101],"cloud":[107],"(Amazon":[108],"Web":[109],"Services":[110],"open":[111],"registry,":[113],"https://registry.opendata.aws/encode-project/)":[114],"comprehensive":[117],"tutorials":[118],"documentation.":[120]},"counts_by_year":[{"year":2026,"cited_by_count":62},{"year":2025,"cited_by_count":292},{"year":2024,"cited_by_count":353},{"year":2023,"cited_by_count":276},{"year":2022,"cited_by_count":85},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":1}],"updated_date":"2026-05-05T08:41:31.759640","created_date":"2025-10-10T00:00:00"}
