{"id":"https://openalex.org/W2983263940","doi":"https://doi.org/10.1093/nar/gkz1020","title":"PlantRegMap: charting functional regulatory maps in plants","display_name":"PlantRegMap: charting functional regulatory maps in plants","publication_year":2019,"publication_date":"2019-10-21","ids":{"openalex":"https://openalex.org/W2983263940","doi":"https://doi.org/10.1093/nar/gkz1020","mag":"2983263940","pmid":"https://pubmed.ncbi.nlm.nih.gov/31701126"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkz1020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz1020","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D1104/31697811/gkz1020.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/48/D1/D1104/31697811/gkz1020.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021860524","display_name":"Feng Tian","orcid":"https://orcid.org/0000-0002-2657-5158"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210160507","display_name":"Center for Life Sciences","ror":"https://ror.org/05kje8j93","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570","https://openalex.org/I4210160507","https://openalex.org/I99065089"]},{"id":"https://openalex.org/I4210165198","display_name":"Beijing Advanced Sciences and Innovation Center","ror":"https://ror.org/05qm21180","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165198"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Feng Tian","raw_affiliation_strings":["Biomedical Pioneering Innovation Center (BIOPIC), Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing\u00a0100871, China","Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing\u00a0100871, China","State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Center for Bioinformatics, Peking University, Beijing\u00a0100871, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Pioneering Innovation Center (BIOPIC), Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing\u00a0100871, China","institution_ids":["https://openalex.org/I4210165198","https://openalex.org/I20231570"]},{"raw_affiliation_string":"Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing\u00a0100871, China","institution_ids":["https://openalex.org/I4210160507","https://openalex.org/I20231570"]},{"raw_affiliation_string":"State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Center for Bioinformatics, Peking University, Beijing\u00a0100871, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108188254","display_name":"De-Chang Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210165198","display_name":"Beijing Advanced Sciences and Innovation Center","ror":"https://ror.org/05qm21180","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165198"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"De-Chang Yang","raw_affiliation_strings":["Biomedical Pioneering Innovation Center (BIOPIC), Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing\u00a0100871, China","State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Center for Bioinformatics, Peking University, Beijing\u00a0100871, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Pioneering Innovation Center (BIOPIC), Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing\u00a0100871, China","institution_ids":["https://openalex.org/I4210165198","https://openalex.org/I20231570"]},{"raw_affiliation_string":"State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Center for Bioinformatics, Peking University, Beijing\u00a0100871, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yu-Qi Meng","orcid":null},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210165198","display_name":"Beijing Advanced Sciences and Innovation Center","ror":"https://ror.org/05qm21180","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165198"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu-Qi Meng","raw_affiliation_strings":["Biomedical Pioneering Innovation Center (BIOPIC), Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing\u00a0100871, China","State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Center for Bioinformatics, Peking University, Beijing\u00a0100871, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Pioneering Innovation Center (BIOPIC), Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing\u00a0100871, China","institution_ids":["https://openalex.org/I4210165198","https://openalex.org/I20231570"]},{"raw_affiliation_string":"State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Center for Bioinformatics, Peking University, Beijing\u00a0100871, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049996238","display_name":"Jinpu Jin","orcid":"https://orcid.org/0009-0007-9091-0866"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210165198","display_name":"Beijing Advanced Sciences and Innovation Center","ror":"https://ror.org/05qm21180","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165198"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinpu Jin","raw_affiliation_strings":["Biomedical Pioneering Innovation Center (BIOPIC), Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing\u00a0100871, China","State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Center for Bioinformatics, Peking University, Beijing\u00a0100871, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Pioneering Innovation Center (BIOPIC), Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing\u00a0100871, China","institution_ids":["https://openalex.org/I4210165198","https://openalex.org/I20231570"]},{"raw_affiliation_string":"State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Center for Bioinformatics, Peking University, Beijing\u00a0100871, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048549975","display_name":"Ge Gao","orcid":"https://orcid.org/0000-0001-6470-8815"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210165198","display_name":"Beijing Advanced Sciences and Innovation Center","ror":"https://ror.org/05qm21180","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165198"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ge Gao","raw_affiliation_strings":["Biomedical Pioneering Innovation Center (BIOPIC), Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing\u00a0100871, China","State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Center for Bioinformatics, Peking University, Beijing\u00a0100871, China"],"raw_orcid":"https://orcid.org/0000-0001-6470-8815","affiliations":[{"raw_affiliation_string":"Biomedical Pioneering Innovation Center (BIOPIC), Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing\u00a0100871, China","institution_ids":["https://openalex.org/I4210165198","https://openalex.org/I20231570"]},{"raw_affiliation_string":"State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Center for Bioinformatics, Peking University, Beijing\u00a0100871, China","institution_ids":["https://openalex.org/I20231570"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5021860524"],"corresponding_institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210160507","https://openalex.org/I4210165198"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":114.7678,"has_fulltext":false,"cited_by_count":1048,"citation_normalized_percentile":{"value":0.99984507,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"48","issue":"D1","first_page":"D1104","last_page":"D1113"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7792007923126221},{"id":"https://openalex.org/keywords/regulatory-sequence","display_name":"Regulatory sequence","score":0.6272277235984802},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6059932708740234},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4807979166507721},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.44353216886520386},{"id":"https://openalex.org/keywords/cis-regulatory-module","display_name":"Cis-regulatory module","score":0.43253055214881897},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.42216169834136963},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.4181380867958069},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.400603711605072},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3229910731315613},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.20524269342422485},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.20385947823524475}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7792007923126221},{"id":"https://openalex.org/C21592294","wikidata":"https://www.wikidata.org/wiki/Q3238407","display_name":"Regulatory sequence","level":4,"score":0.6272277235984802},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6059932708740234},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4807979166507721},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.44353216886520386},{"id":"https://openalex.org/C190796033","wikidata":"https://www.wikidata.org/wiki/Q1093165","display_name":"Cis-regulatory module","level":5,"score":0.43253055214881897},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.42216169834136963},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.4181380867958069},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.400603711605072},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3229910731315613},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.20524269342422485},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.20385947823524475},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkz1020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz1020","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D1104/31697811/gkz1020.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:31701126","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31701126","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7145545","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7145545","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkz1020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz1020","pdf_url":"https://academic.oup.com/nar/article-pdf/48/D1/D1104/31697811/gkz1020.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.699999988079071,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G1673621360","display_name":null,"funder_award_id":"2014M560017","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G3549505835","display_name":null,"funder_award_id":"2015T80015","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G6633785515","display_name":null,"funder_award_id":"1470330","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320326901","display_name":"State Key Laboratory of Protein and Plant Gene Research","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2983263940.pdf","grobid_xml":"https://content.openalex.org/works/W2983263940.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1602381515","https://openalex.org/W1786896381","https://openalex.org/W1971645723","https://openalex.org/W1988832105","https://openalex.org/W1996934645","https://openalex.org/W2003144438","https://openalex.org/W2008051478","https://openalex.org/W2024439539","https://openalex.org/W2033169664","https://openalex.org/W2054624670","https://openalex.org/W2081805493","https://openalex.org/W2085063163","https://openalex.org/W2096525273","https://openalex.org/W2107580398","https://openalex.org/W2112132489","https://openalex.org/W2118533197","https://openalex.org/W2124992064","https://openalex.org/W2127968944","https://openalex.org/W2136090457","https://openalex.org/W2137784504","https://openalex.org/W2141292707","https://openalex.org/W2142678031","https://openalex.org/W2142827025","https://openalex.org/W2145191876","https://openalex.org/W2146127418","https://openalex.org/W2162128823","https://openalex.org/W2162928155","https://openalex.org/W2165089782","https://openalex.org/W2401562190","https://openalex.org/W2409781001","https://openalex.org/W2419574648","https://openalex.org/W2481855603","https://openalex.org/W2533355719","https://openalex.org/W2548592136","https://openalex.org/W2787788280","https://openalex.org/W2899798266","https://openalex.org/W2910442120","https://openalex.org/W2911748767","https://openalex.org/W3136918052","https://openalex.org/W4237381349","https://openalex.org/W4237403594","https://openalex.org/W4239634997","https://openalex.org/W6638274289","https://openalex.org/W6721648793"],"related_works":["https://openalex.org/W1576021314","https://openalex.org/W1557222478","https://openalex.org/W2153800196","https://openalex.org/W68078148","https://openalex.org/W2117549173","https://openalex.org/W2125854412","https://openalex.org/W2379997263","https://openalex.org/W2367493320","https://openalex.org/W1502510273","https://openalex.org/W2134680153"],"abstract_inverted_index":{"With":[0],"the":[1,21,37,46,49,69,88,124,131,139,143,167,189],"goal":[2],"of":[3,72,128,171],"charting":[4,166],"plant":[5,28,190,198],"transcriptional":[6,199],"regulatory":[7,29,118,169,200],"maps":[8,170],"(i.e.":[9],"transcription":[10],"factors":[11],"(TFs),":[12],"cis-elements":[13,91],"and":[14,31,53,92,97,108,120,142,157,183],"interactions":[15,94,121,161],"between":[16,95],"them),":[17],"we":[18,44,83,146],"have":[19],"upgraded":[20],"TF-centred":[22],"database":[23],"PlantTFDB":[24],"(http://planttfdb.cbi.pku.edu.cn/)":[25],"to":[26,63,68,78,86,114],"a":[27,56,184],"data":[30,89],"analysis":[32],"platform":[33],"PlantRegMap":[34,181],"(http://plantregmap.cbi.pku.edu.cn/)":[35,182],"over":[36,149],"past":[38],"three":[39],"years.":[40],"In":[41,76],"this":[42],"version,":[43],"updated":[45],"annotations":[47],"for":[48,104,116,162,196],"previously":[50],"collected":[51],"TFs":[52,96,129],"set":[54],"up":[55],"new":[57],"section,":[58],"'extended":[59],"TF":[60,70,81,153],"repertoires'":[61],"(TFext),":[62],"allow":[64],"users":[65],"prompt":[66],"access":[67],"repertoires":[71],"newly":[73],"sequenced":[74],"species.":[75],"addition":[77],"our":[79],"regular":[80],"updates,":[82],"are":[84,177],"dedicated":[85],"updating":[87],"on":[90,134],"functional":[93,117,152,160,168],"cis-elements.":[98],"We":[99],"established":[100],"genome-wide":[101],"conservation":[102,144],"landscapes":[103],"63":[105,173],"representative":[106],"plants":[107],"then":[109],"developed":[110],"an":[111],"algorithm,":[112],"FunTFBS,":[113],"screen":[115],"elements":[119],"by":[122],"coupling":[123],"base-varied":[125],"binding":[126,136,154],"affinities":[127],"with":[130,193],"evolutionary":[132],"footprints":[133],"their":[135],"sites.":[137],"Using":[138],"FunTFBS":[140],"algorithm":[141],"landscapes,":[145],"further":[147],"identified":[148],"20":[150],"million":[151,159],"sites":[155],"(TFBSs)":[156],"two":[158],"21":[163],"346":[164],"TFs,":[165],"these":[172],"plants.":[174],"These":[175],"resources":[176,195],"publicly":[178],"available":[179],"at":[180],"cloud-based":[185],"mirror":[186],"(http://plantregmap.gao-lab.org/),":[187],"providing":[188],"research":[191],"community":[192],"valuable":[194],"decoding":[197],"systems.":[201]},"counts_by_year":[{"year":2026,"cited_by_count":36},{"year":2025,"cited_by_count":192},{"year":2024,"cited_by_count":227},{"year":2023,"cited_by_count":203},{"year":2022,"cited_by_count":191},{"year":2021,"cited_by_count":127},{"year":2020,"cited_by_count":68},{"year":2019,"cited_by_count":2}],"updated_date":"2026-05-11T08:15:01.531666","created_date":"2025-10-10T00:00:00"}