{"id":"https://openalex.org/W2993803840","doi":"https://doi.org/10.1093/nar/gkz1000","title":"OUP accepted manuscript","display_name":"OUP accepted manuscript","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2993803840","doi":"https://doi.org/10.1093/nar/gkz1000","mag":"2993803840","pmid":"https://pubmed.ncbi.nlm.nih.gov/31691799"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkz1000","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz1000","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkz1000","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064748607","display_name":"Areski Flissi","orcid":"https://orcid.org/0009-0004-4309-2803"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I4210115519","display_name":"Centre de Recherche en Informatique","ror":"https://ror.org/020cdve92","country_code":"FR","type":"facility","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I4210091621","https://openalex.org/I4210115519","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I7454413","display_name":"\u00c9cole Centrale de Lille","ror":"https://ror.org/01x441g73","country_code":"FR","type":"education","lineage":["https://openalex.org/I7454413"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Areski Flissi","raw_affiliation_strings":["Univ. Lille, CNRS, Centrale Lille, UMR 9189 - CRIStAL - Centre de Recherche en Informatique Signal et Automatique de Lille, F-59000 Lille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ. Lille, CNRS, Centrale Lille, UMR 9189 - CRIStAL - Centre de Recherche en Informatique Signal et Automatique de Lille, F-59000 Lille, France","institution_ids":["https://openalex.org/I4210115519","https://openalex.org/I2279609970","https://openalex.org/I7454413","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067495057","display_name":"Emma Ricart","orcid":"https://orcid.org/0000-0001-9086-7051"},"institutions":[{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Emma Ricart","raw_affiliation_strings":["Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, CMU, Rue Michel-Servet 1, 1211 Geneva, Switzerland","Computer Science Department, University of Geneva, CUI, 7 route de Drize, 1227 Carouge, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, CMU, Rue Michel-Servet 1, 1211 Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Computer Science Department, University of Geneva, CUI, 7 route de Drize, 1227 Carouge, Switzerland","institution_ids":["https://openalex.org/I114457229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038160449","display_name":"Cl\u00e9mentine Campart","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I4210115519","display_name":"Centre de Recherche en Informatique","ror":"https://ror.org/020cdve92","country_code":"FR","type":"facility","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I4210091621","https://openalex.org/I4210115519","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I7454413","display_name":"\u00c9cole Centrale de Lille","ror":"https://ror.org/01x441g73","country_code":"FR","type":"education","lineage":["https://openalex.org/I7454413"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Cl\u00e9mentine Campart","raw_affiliation_strings":["Univ. Lille, CNRS, Centrale Lille, UMR 9189 - CRIStAL - Centre de Recherche en Informatique Signal et Automatique de Lille, F-59000 Lille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ. Lille, CNRS, Centrale Lille, UMR 9189 - CRIStAL - Centre de Recherche en Informatique Signal et Automatique de Lille, F-59000 Lille, France","institution_ids":["https://openalex.org/I4210115519","https://openalex.org/I2279609970","https://openalex.org/I7454413","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108587206","display_name":"Micka\u00ebl Chevalier","orcid":null},"institutions":[{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I4210091574","display_name":"Institut Charles Viollette","ror":"https://ror.org/0018c4h73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2279609970","https://openalex.org/I2802487185","https://openalex.org/I4210091574","https://openalex.org/I4210116330","https://openalex.org/I44563897"]},{"id":"https://openalex.org/I44563897","display_name":"Universit\u00e9 d'Artois","ror":"https://ror.org/053x9s498","country_code":"FR","type":"education","lineage":["https://openalex.org/I44563897"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Mickael Chevalier","raw_affiliation_strings":["Univ. Lille, INRA, ISA, Univ. Artois, Univ. Littoral C\u00f4te d'Opale, EA 7394-ICV- Institut Charles Viollette, F-59000 Lille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ. Lille, INRA, ISA, Univ. Artois, Univ. Littoral C\u00f4te d'Opale, EA 7394-ICV- Institut Charles Viollette, F-59000 Lille, France","institution_ids":["https://openalex.org/I44563897","https://openalex.org/I2279609970","https://openalex.org/I4210091574"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018499801","display_name":"Yoann Dufresne","orcid":"https://orcid.org/0000-0002-0930-8920"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I4210115519","display_name":"Centre de Recherche en Informatique","ror":"https://ror.org/020cdve92","country_code":"FR","type":"facility","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I4210091621","https://openalex.org/I4210115519","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I7454413","display_name":"\u00c9cole Centrale de Lille","ror":"https://ror.org/01x441g73","country_code":"FR","type":"education","lineage":["https://openalex.org/I7454413"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Yoann Dufresne","raw_affiliation_strings":["Univ. Lille, CNRS, Centrale Lille, UMR 9189 - CRIStAL - Centre de Recherche en Informatique Signal et Automatique de Lille, F-59000 Lille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ. Lille, CNRS, Centrale Lille, UMR 9189 - CRIStAL - Centre de Recherche en Informatique Signal et Automatique de Lille, F-59000 Lille, France","institution_ids":["https://openalex.org/I4210115519","https://openalex.org/I2279609970","https://openalex.org/I7454413","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047774805","display_name":"Juraj Mich\u00e1lik","orcid":"https://orcid.org/0000-0001-8479-0991"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I4210115519","display_name":"Centre de Recherche en Informatique","ror":"https://ror.org/020cdve92","country_code":"FR","type":"facility","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I4210091621","https://openalex.org/I4210115519","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I4210123471","display_name":"Institut d'\u00e9lectronique de micro\u00e9lectronique et de nanotechnologie","ror":"https://ror.org/02q4res37","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I137614889","https://openalex.org/I2279609970","https://openalex.org/I3132279224","https://openalex.org/I4210095849","https://openalex.org/I4210123471","https://openalex.org/I4387154098","https://openalex.org/I70348806","https://openalex.org/I70348806","https://openalex.org/I7454413"]},{"id":"https://openalex.org/I7454413","display_name":"\u00c9cole Centrale de Lille","ror":"https://ror.org/01x441g73","country_code":"FR","type":"education","lineage":["https://openalex.org/I7454413"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Juraj Michalik","raw_affiliation_strings":["Univ. Lille, CNRS, Centrale Lille, UMR 9189 - CRIStAL - Centre de Recherche en Informatique Signal et Automatique de Lille, F-59000 Lille, France","bilille, CNRS, cit\u00e9 scientifique, F-59650 Villeneuve d'Ascq, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ. Lille, CNRS, Centrale Lille, UMR 9189 - CRIStAL - Centre de Recherche en Informatique Signal et Automatique de Lille, F-59000 Lille, France","institution_ids":["https://openalex.org/I4210115519","https://openalex.org/I2279609970","https://openalex.org/I7454413","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"bilille, CNRS, cit\u00e9 scientifique, F-59650 Villeneuve d'Ascq, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210123471"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108101057","display_name":"Philippe Jacques","orcid":"https://orcid.org/0000-0003-4392-9525"},"institutions":[{"id":"https://openalex.org/I27895137","display_name":"Gembloux Agro-Bio Tech","ror":"https://ror.org/00bmzhb16","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565","https://openalex.org/I27895137"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Philippe Jacques","raw_affiliation_strings":["TERRA Teaching and Research Centre, Microbial Processes and Interactions, Gembloux Agro-Bio Tech, University of Li\u00e8ge, Avenue de la Facult\u00e9 d'Agronomie, B5030 Gembloux, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TERRA Teaching and Research Centre, Microbial Processes and Interactions, Gembloux Agro-Bio Tech, University of Li\u00e8ge, Avenue de la Facult\u00e9 d'Agronomie, B5030 Gembloux, Belgium","institution_ids":["https://openalex.org/I27895137"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064457144","display_name":"Christophe Flahaut","orcid":"https://orcid.org/0000-0002-2603-962X"},"institutions":[{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I4210091574","display_name":"Institut Charles Viollette","ror":"https://ror.org/0018c4h73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2279609970","https://openalex.org/I2802487185","https://openalex.org/I4210091574","https://openalex.org/I4210116330","https://openalex.org/I44563897"]},{"id":"https://openalex.org/I44563897","display_name":"Universit\u00e9 d'Artois","ror":"https://ror.org/053x9s498","country_code":"FR","type":"education","lineage":["https://openalex.org/I44563897"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christophe Flahaut","raw_affiliation_strings":["Univ. Lille, INRA, ISA, Univ. Artois, Univ. Littoral C\u00f4te d'Opale, EA 7394-ICV- Institut Charles Viollette, F-59000 Lille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ. Lille, INRA, ISA, Univ. Artois, Univ. Littoral C\u00f4te d'Opale, EA 7394-ICV- Institut Charles Viollette, F-59000 Lille, France","institution_ids":["https://openalex.org/I44563897","https://openalex.org/I2279609970","https://openalex.org/I4210091574"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037107254","display_name":"Fr\u00e9d\u00e9rique Lisacek","orcid":"https://orcid.org/0000-0002-0948-4537"},"institutions":[{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Fr\u00e9d\u00e9rique Lisacek","raw_affiliation_strings":["Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, CMU, Rue Michel-Servet 1, 1211 Geneva, Switzerland","Computer Science Department, University of Geneva, CUI, 7 route de Drize, 1227 Carouge, Switzerland","Section of Biology, University of Geneva, Sciences III, 30 quai Ernest-Ansermet, 1211 Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, CMU, Rue Michel-Servet 1, 1211 Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Computer Science Department, University of Geneva, CUI, 7 route de Drize, 1227 Carouge, Switzerland","institution_ids":["https://openalex.org/I114457229"]},{"raw_affiliation_string":"Section of Biology, University of Geneva, Sciences III, 30 quai Ernest-Ansermet, 1211 Geneva, Switzerland","institution_ids":["https://openalex.org/I114457229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088172788","display_name":"Val\u00e9rie Lecl\u00e8re","orcid":"https://orcid.org/0000-0003-2463-5361"},"institutions":[{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I4210091574","display_name":"Institut Charles Viollette","ror":"https://ror.org/0018c4h73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2279609970","https://openalex.org/I2802487185","https://openalex.org/I4210091574","https://openalex.org/I4210116330","https://openalex.org/I44563897"]},{"id":"https://openalex.org/I44563897","display_name":"Universit\u00e9 d'Artois","ror":"https://ror.org/053x9s498","country_code":"FR","type":"education","lineage":["https://openalex.org/I44563897"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Val\u00e9rie Lecl\u00e8re","raw_affiliation_strings":["Univ. Lille, INRA, ISA, Univ. Artois, Univ. Littoral C\u00f4te d'Opale, EA 7394-ICV- Institut Charles Viollette, F-59000 Lille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ. Lille, INRA, ISA, Univ. Artois, Univ. Littoral C\u00f4te d'Opale, EA 7394-ICV- Institut Charles Viollette, F-59000 Lille, France","institution_ids":["https://openalex.org/I44563897","https://openalex.org/I2279609970","https://openalex.org/I4210091574"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024994641","display_name":"Maude Pupin","orcid":"https://orcid.org/0000-0003-3197-0715"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]},{"id":"https://openalex.org/I4210115519","display_name":"Centre de Recherche en Informatique","ror":"https://ror.org/020cdve92","country_code":"FR","type":"facility","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I4210091621","https://openalex.org/I4210115519","https://openalex.org/I70768539"]},{"id":"https://openalex.org/I7454413","display_name":"\u00c9cole Centrale de Lille","ror":"https://ror.org/01x441g73","country_code":"FR","type":"education","lineage":["https://openalex.org/I7454413"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Maude Pupin","raw_affiliation_strings":["Univ. Lille, CNRS, Centrale Lille, UMR 9189 - CRIStAL - Centre de Recherche en Informatique Signal et Automatique de Lille, F-59000 Lille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Univ. Lille, CNRS, Centrale Lille, UMR 9189 - CRIStAL - Centre de Recherche en Informatique Signal et Automatique de Lille, F-59000 Lille, France","institution_ids":["https://openalex.org/I4210115519","https://openalex.org/I2279609970","https://openalex.org/I7454413","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":11,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3200,"currency":"EUR","value_usd":3451},"fwci":7.4591,"has_fulltext":false,"cited_by_count":69,"citation_normalized_percentile":{"value":0.97782739,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"48","issue":"D1","first_page":"D465","last_page":"D469"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9854999780654907,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9775999784469604,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9279448986053467},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3411433696746826}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9279448986053467},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3411433696746826}],"mesh":[{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046908","descriptor_name":"Peptide Biosynthesis, Nucleic Acid-Independent","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046908","descriptor_name":"Peptide Biosynthesis, Nucleic Acid-Independent","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046908","descriptor_name":"Peptide Biosynthesis, Nucleic Acid-Independent","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkz1000","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz1000","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:31691799","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31691799","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:HAL:hal-02376009v1","is_oa":false,"landing_page_url":"https://hal.science/hal-02376009","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2019, &#x27E8;10.1093/nar/gkz1000&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:orbi.ulg.ac.be:2268/249574","is_oa":true,"landing_page_url":"https://orbi.uliege.be/handle/2268/249574","pdf_url":null,"source":{"id":"https://openalex.org/S4306400651","display_name":"Open Repository and Bibliography (University of Li\u00e8ge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I157674565","host_organization_name":"University of Li\u00e8ge","host_organization_lineage":["https://openalex.org/I157674565"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 48 (D1), D465-D469 (2020)","raw_type":"peer reviewed"},{"id":"pmh:oai:pubmedcentral.nih.gov:7145658","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7145658","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkz1000","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkz1000","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320316137","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1601495365","https://openalex.org/W1888768776","https://openalex.org/W1893791156","https://openalex.org/W1894518760","https://openalex.org/W1908709110","https://openalex.org/W1957185080","https://openalex.org/W1974794668","https://openalex.org/W1978609583","https://openalex.org/W1990935073","https://openalex.org/W1995808589","https://openalex.org/W2005309102","https://openalex.org/W2011700260","https://openalex.org/W2041537722","https://openalex.org/W2041603354","https://openalex.org/W2049782367","https://openalex.org/W2114363966","https://openalex.org/W2126079135","https://openalex.org/W2135639274","https://openalex.org/W2137490801","https://openalex.org/W2145974700","https://openalex.org/W2155478691","https://openalex.org/W2170463736","https://openalex.org/W2175390955","https://openalex.org/W2187341651","https://openalex.org/W2207769928","https://openalex.org/W2558999090","https://openalex.org/W2602946330","https://openalex.org/W2898210859","https://openalex.org/W2899070097","https://openalex.org/W2918756535","https://openalex.org/W4251704389"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933","https://openalex.org/W2061542922"],"abstract_inverted_index":{"Norine,":[0],"the":[1,49,59,104,111,127,140,157],"unique":[2],"resource":[3],"dedicated":[4],"to":[5,16,27,46,66,103,125,134],"nonribosomal":[6],"peptides":[7],"(NRPs),":[8],"is":[9,56,153],"now":[10],"updated":[11],"with":[12],"a":[13,38,136],"new":[14,100,108,123],"pipeline":[15],"automate":[17],"massive":[18],"sourcing":[19],"and":[20,52,79,82,110,133],"enhance":[21],"annotation.":[22],"External":[23,61],"databases":[24,62],"are":[25,31,44],"mined":[26],"extract":[28],"NRPs":[29,70,109,131],"that":[30],"not":[32],"yet":[33],"in":[34,58,72],"Norine.":[35,73],"To":[36],"maintain":[37],"high":[39],"data":[40,55],"quality,":[41],"successive":[42],"filters":[43],"applied":[45],"automatically":[47],"validate":[48],"NRP":[50,145],"annotations":[51,68,116],"only":[53],"validated":[54],"inserted":[57],"database.":[60],"were":[63,149],"also":[64,150],"used":[65],"complete":[67],"of":[69,106,115,117,130,143],"already":[71],"Besides,":[74],"annotation":[75,87],"consistency":[76],"inside":[77],"Norine":[78,81,120,152],"between":[80],"external":[83],"sources":[84],"have":[85],"reported":[86],"errors.":[88],"Some":[89],"can":[90],"be":[91],"corrected":[92],"automatically,":[93],"while":[94],"others":[95],"need":[96],"manual":[97],"curation.":[98],"This":[99],"approach":[101],"led":[102],"insertion":[105],"539":[107],"addition":[112],"or":[113],"correction":[114],"nearly":[118],"all":[119],"entries.":[121],"Two":[122],"tools":[124],"analyse":[126],"chemical":[128],"structures":[129],"(rBAN)":[132],"infer":[135],"molecular":[137],"formula":[138],"from":[139,156],"mass-to-charge":[141],"ratio":[142],"an":[144],"(Kendrick":[146],"Formula":[147],"Predictor)":[148],"integrated.":[151],"freely":[154],"accessible":[155],"following":[158],"URL:":[159],"https://bioinfo.cristal.univ-lille.fr/norine/.":[160]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":13}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2019-12-13T00:00:00"}
