{"id":"https://openalex.org/W2899191663","doi":"https://doi.org/10.1093/nar/gky951","title":"ViBrism DB: an interactive search and viewer platform for 2D/3D anatomical images of gene expression and co-expression networks","display_name":"ViBrism DB: an interactive search and viewer platform for 2D/3D anatomical images of gene expression and co-expression networks","publication_year":2018,"publication_date":"2018-10-10","ids":{"openalex":"https://openalex.org/W2899191663","doi":"https://doi.org/10.1093/nar/gky951","mag":"2899191663","pmid":"https://pubmed.ncbi.nlm.nih.gov/30371824"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gky951","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky951","pdf_url":"https://academic.oup.com/nar/article-pdf/47/D1/D859/27436100/gky951.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/47/D1/D859/27436100/gky951.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109113899","display_name":"Masahiko Morita","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165842","display_name":"RIKEN Center for Advanced Photonics","ror":"https://ror.org/05vmjks78","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210165842"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masahiko Morita","raw_affiliation_strings":["RIKEN Center for Advanced Photonics, Wako, Saitama\u00a0351-0198, Japan"],"affiliations":[{"raw_affiliation_string":"RIKEN Center for Advanced Photonics, Wako, Saitama\u00a0351-0198, Japan","institution_ids":["https://openalex.org/I4210165842"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102901825","display_name":"Kazuro Shimokawa","orcid":"https://orcid.org/0000-0002-6707-2856"},"institutions":[{"id":"https://openalex.org/I201537933","display_name":"Tohoku University","ror":"https://ror.org/01dq60k83","country_code":"JP","type":"education","lineage":["https://openalex.org/I201537933"]},{"id":"https://openalex.org/I4210136366","display_name":"Tohoku Medical Megabank Organization","ror":"https://ror.org/03zzyap02","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4210136366"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kazuro Shimokawa","raw_affiliation_strings":["Tohoku Medical Megabank Organization, Tohoku University, Sendai, Miyagi\u00a0980-8575, Japan"],"affiliations":[{"raw_affiliation_string":"Tohoku Medical Megabank Organization, Tohoku University, Sendai, Miyagi\u00a0980-8575, Japan","institution_ids":["https://openalex.org/I4210136366","https://openalex.org/I201537933"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074081339","display_name":"Masaomi Nishimura","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165842","display_name":"RIKEN Center for Advanced Photonics","ror":"https://ror.org/05vmjks78","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210165842"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masaomi Nishimura","raw_affiliation_strings":["RIKEN Center for Advanced Photonics, Wako, Saitama\u00a0351-0198, Japan"],"affiliations":[{"raw_affiliation_string":"RIKEN Center for Advanced Photonics, Wako, Saitama\u00a0351-0198, Japan","institution_ids":["https://openalex.org/I4210165842"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103765765","display_name":"Sakiko Nakamura","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165842","display_name":"RIKEN Center for Advanced Photonics","ror":"https://ror.org/05vmjks78","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210165842"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Sakiko Nakamura","raw_affiliation_strings":["RIKEN Center for Advanced Photonics, Wako, Saitama\u00a0351-0198, Japan"],"affiliations":[{"raw_affiliation_string":"RIKEN Center for Advanced Photonics, Wako, Saitama\u00a0351-0198, Japan","institution_ids":["https://openalex.org/I4210165842"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110116574","display_name":"Yuki Tsujimura","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165842","display_name":"RIKEN Center for Advanced Photonics","ror":"https://ror.org/05vmjks78","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210165842"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yuki Tsujimura","raw_affiliation_strings":["RIKEN Center for Advanced Photonics, Wako, Saitama\u00a0351-0198, Japan"],"affiliations":[{"raw_affiliation_string":"RIKEN Center for Advanced Photonics, Wako, Saitama\u00a0351-0198, Japan","institution_ids":["https://openalex.org/I4210165842"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046226656","display_name":"Satoko Takemoto","orcid":"https://orcid.org/0000-0003-0258-6589"},"institutions":[{"id":"https://openalex.org/I4210165842","display_name":"RIKEN Center for Advanced Photonics","ror":"https://ror.org/05vmjks78","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210165842"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Satoko Takemoto","raw_affiliation_strings":["RIKEN Center for Advanced Photonics, Wako, Saitama\u00a0351-0198, Japan"],"affiliations":[{"raw_affiliation_string":"RIKEN Center for Advanced Photonics, Wako, Saitama\u00a0351-0198, Japan","institution_ids":["https://openalex.org/I4210165842"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078808997","display_name":"Takehiro Tawara","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165842","display_name":"RIKEN Center for Advanced Photonics","ror":"https://ror.org/05vmjks78","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210165842"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takehiro Tawara","raw_affiliation_strings":["RIKEN Center for Advanced Photonics, Wako, Saitama\u00a0351-0198, Japan"],"affiliations":[{"raw_affiliation_string":"RIKEN Center for Advanced Photonics, Wako, Saitama\u00a0351-0198, Japan","institution_ids":["https://openalex.org/I4210165842"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014175129","display_name":"Hideo Yokota","orcid":"https://orcid.org/0000-0003-1395-309X"},"institutions":[{"id":"https://openalex.org/I4210165842","display_name":"RIKEN Center for Advanced Photonics","ror":"https://ror.org/05vmjks78","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210165842"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hideo Yokota","raw_affiliation_strings":["RIKEN Center for Advanced Photonics, Wako, Saitama\u00a0351-0198, Japan"],"affiliations":[{"raw_affiliation_string":"RIKEN Center for Advanced Photonics, Wako, Saitama\u00a0351-0198, Japan","institution_ids":["https://openalex.org/I4210165842"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025283678","display_name":"Shuhei Wemler","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shuhei Wemler","raw_affiliation_strings":["Wemler Software, Nerima, Tokyo\u00a0177-0042, Japan"],"affiliations":[{"raw_affiliation_string":"Wemler Software, Nerima, Tokyo\u00a0177-0042, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102938578","display_name":"Daisuke Miyamoto","orcid":"https://orcid.org/0000-0003-0967-9040"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Daisuke Miyamoto","raw_affiliation_strings":["Graduate School of Engineering, The University of Tokyo, Meguro, Tokyo\u00a0153-0041, Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Engineering, The University of Tokyo, Meguro, Tokyo\u00a0153-0041, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090053593","display_name":"Hidetoshi Ikeno","orcid":"https://orcid.org/0000-0002-5134-5485"},"institutions":[{"id":"https://openalex.org/I180941496","display_name":"University of Hyogo","ror":"https://ror.org/0151bmh98","country_code":"JP","type":"education","lineage":["https://openalex.org/I180941496"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hidetoshi Ikeno","raw_affiliation_strings":["School of Human Science and Environment, University of Hyogo, Himeji, Hyogo\u00a0670-0092, Japan"],"affiliations":[{"raw_affiliation_string":"School of Human Science and Environment, University of Hyogo, Himeji, Hyogo\u00a0670-0092, Japan","institution_ids":["https://openalex.org/I180941496"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019489630","display_name":"Akira Sato","orcid":"https://orcid.org/0000-0002-2239-6208"},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Akira Sato","raw_affiliation_strings":["Faculty of Science and Technology, Tokyo University of Science, Noda, Chiba\u00a0278-8510, Japan"],"affiliations":[{"raw_affiliation_string":"Faculty of Science and Technology, Tokyo University of Science, Noda, Chiba\u00a0278-8510, Japan","institution_ids":["https://openalex.org/I161296585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081018954","display_name":"Teiichi Furuichi","orcid":"https://orcid.org/0000-0002-9676-1888"},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Teiichi Furuichi","raw_affiliation_strings":["Faculty of Science and Technology, Tokyo University of Science, Noda, Chiba\u00a0278-8510, Japan"],"affiliations":[{"raw_affiliation_string":"Faculty of Science and Technology, Tokyo University of Science, Noda, Chiba\u00a0278-8510, Japan","institution_ids":["https://openalex.org/I161296585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056616525","display_name":"Norio Kobayashi","orcid":"https://orcid.org/0009-0007-8718-6010"},"institutions":[{"id":"https://openalex.org/I4210110652","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Norio Kobayashi","raw_affiliation_strings":["Head Office for Information Systems and Cybersecurity, RIKEN, Wako, Saitama\u00a0351-0198, Japan"],"affiliations":[{"raw_affiliation_string":"Head Office for Information Systems and Cybersecurity, RIKEN, Wako, Saitama\u00a0351-0198, Japan","institution_ids":["https://openalex.org/I4210110652"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059097205","display_name":"Y. Okumura","orcid":"https://orcid.org/0000-0002-9650-0362"},"institutions":[{"id":"https://openalex.org/I2800939219","display_name":"RIKEN Center for Brain Science","ror":"https://ror.org/04j1n1c04","country_code":"JP","type":"facility","lineage":["https://openalex.org/I2800939219","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yoshihiro Okumura","raw_affiliation_strings":["RIKEN Center for Brain Science, Wako, Saitama\u00a0351-0198, Japan"],"affiliations":[{"raw_affiliation_string":"RIKEN Center for Brain Science, Wako, Saitama\u00a0351-0198, Japan","institution_ids":["https://openalex.org/I2800939219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035578520","display_name":"Yoko Yamaguchi","orcid":"https://orcid.org/0000-0002-0526-0069"},"institutions":[{"id":"https://openalex.org/I2800939219","display_name":"RIKEN Center for Brain Science","ror":"https://ror.org/04j1n1c04","country_code":"JP","type":"facility","lineage":["https://openalex.org/I2800939219","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yoko Yamaguchi","raw_affiliation_strings":["RIKEN Center for Brain Science, Wako, Saitama\u00a0351-0198, Japan"],"affiliations":[{"raw_affiliation_string":"RIKEN Center for Brain Science, Wako, Saitama\u00a0351-0198, Japan","institution_ids":["https://openalex.org/I2800939219"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041443588","display_name":"Yuko Okamura-Oho","orcid":"https://orcid.org/0000-0002-2066-407X"},"institutions":[{"id":"https://openalex.org/I4210165842","display_name":"RIKEN Center for Advanced Photonics","ror":"https://ror.org/05vmjks78","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210165842"]},{"id":"https://openalex.org/I146083938","display_name":"Jissen Women's University","ror":"https://ror.org/01k9bj230","country_code":"JP","type":"education","lineage":["https://openalex.org/I146083938"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Yuko Okamura-Oho","raw_affiliation_strings":["Faculty of Human Life Science, Jissen Women's University, Hino, Tokyo\u00a0191-8510, Japan","RIKEN Center for Advanced Photonics, Wako, Saitama\u00a0351-0198, Japan"],"affiliations":[{"raw_affiliation_string":"Faculty of Human Life Science, Jissen Women's University, Hino, Tokyo\u00a0191-8510, Japan","institution_ids":["https://openalex.org/I146083938"]},{"raw_affiliation_string":"RIKEN Center for Advanced Photonics, Wako, Saitama\u00a0351-0198, Japan","institution_ids":["https://openalex.org/I4210165842"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":17,"corresponding_author_ids":["https://openalex.org/A5041443588"],"corresponding_institution_ids":["https://openalex.org/I146083938","https://openalex.org/I4210165842"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.2793,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.58254647,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"47","issue":"D1","first_page":"D859","last_page":"D866"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6797503232955933},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6078361868858337},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5721924304962158},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5688555836677551},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.558388352394104},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.5186073780059814},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5099622011184692},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4521900415420532},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.43202805519104004},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4239034950733185},{"id":"https://openalex.org/keywords/color-coding","display_name":"Color-coding","score":0.41750526428222656},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4124453365802765},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.41019874811172485},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.2859259843826294},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2619055509567261},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21714860200881958}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6797503232955933},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6078361868858337},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5721924304962158},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5688555836677551},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.558388352394104},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.5186073780059814},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5099622011184692},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4521900415420532},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.43202805519104004},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4239034950733185},{"id":"https://openalex.org/C104597421","wikidata":"https://www.wikidata.org/wiki/Q5148529","display_name":"Color-coding","level":2,"score":0.41750526428222656},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4124453365802765},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.41019874811172485},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.2859259843826294},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2619055509567261},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21714860200881958},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gky951","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky951","pdf_url":"https://academic.oup.com/nar/article-pdf/47/D1/D859/27436100/gky951.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:30371824","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30371824","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:5302012","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6324046","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6324046","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6324046","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gky951","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky951","pdf_url":"https://academic.oup.com/nar/article-pdf/47/D1/D859/27436100/gky951.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1160716697","display_name":null,"funder_award_id":"KAKENHI [","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G1251824706","display_name":"\u5012\u7acb\u53f0\u306b\u3088\u308b\u30d7\u30c3\u30b7\u30e5\u30a2\u30c3\u30d7\u306e\u4e00\u8003\u5bdf","funder_award_id":"28011","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G197248034","display_name":"\u30ac\u30e9\u30b9\u306e\u5206\u76f8\u73fe\u8c61\u306e\u5229\u7528","funder_award_id":"58057","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G2282683197","display_name":null,"funder_award_id":"16HP8032","funder_id":"https://openalex.org/F4320320212","funder_display_name":"Japan Society for the Promotion of Science London"},{"id":"https://openalex.org/G2385159600","display_name":"\u751f\u4f53\u819c\u7814\u7a76\u306e\u30e2\u30c7\u30eb\u7d30\u80de\u3068\u3057\u3066\u306e\u539f\u751f\u52d5\u7269\u30c6\u30c8\u30e9\u30d2\u30e1\u30ca\u7d30\u80de\u306e\u6709\u7528\u6027","funder_award_id":"258057","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G2633304253","display_name":null,"funder_award_id":"15HP8038","funder_id":"https://openalex.org/F4320320212","funder_display_name":"Japan Society for the Promotion of Science London"},{"id":"https://openalex.org/G2708260314","display_name":"\u65e5\u672c\u306b\u304a\u3051\u308b\u86c7\u7d0b\u5ca9\u7531\u6765\u306e\u571f\u58cc\u306b\u3064\u3044\u3066","funder_award_id":"556042","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G2775985657","display_name":"Creating Gene Expression Based Digital Brain Atlas with Our New Mapping Technique and Map Analysis","funder_award_id":"25560428","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G319059903","display_name":null,"funder_award_id":"23300137","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G3236194794","display_name":null,"funder_award_id":"Grant-in-Aid","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4432665","display_name":null,"funder_award_id":"15H05954","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4657425800","display_name":null,"funder_award_id":"15H05","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G4757423060","display_name":"\u73fe\u4ee3\u306b\u304a\u3051\u308b\u4f53\u80b2\u30fb\u30b9\u30dd\u30fc\u30c4\u30fb\u6b66\u9053\u89b3\u306e\u7814\u7a76","funder_award_id":"268032","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G512341718","display_name":"\u793e\u4f1a\u79d1\u5b66\u5e74\u88681751-1800","funder_award_id":"233001","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G5396239172","display_name":null,"funder_award_id":"Grant-in-Aid for JSPS Fellows","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G5600454446","display_name":null,"funder_award_id":"26280110","funder_id":"https://openalex.org/F4320320212","funder_display_name":"Japan Society for the Promotion of Science London"},{"id":"https://openalex.org/G5866583833","display_name":null,"funder_award_id":"17HP8082","funder_id":"https://openalex.org/F4320320212","funder_display_name":"Japan Society for the Promotion of Science London"},{"id":"https://openalex.org/G6003900650","display_name":"\u92fc\u7d20\u306e\u96fb\u78c1\u63a1\u50b7\u88c5\u7f6e\u306e\u958b\u767a\u306b\u95a2\u3059\u308b\u7814\u7a76","funder_award_id":"56042","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G7267686441","display_name":"\u30b3\u30f3\u30af\u30ea\u30fc\u30c8\u306b\u304a\u3051\u308b\u6d77\u6c34\u304a\u3088\u3073\u6d77\u7802\u306e\u4f7f\u7528\u306b\u95a2\u3059\u308b\u7814\u7a76","funder_award_id":"55604","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G7314194600","display_name":null,"funder_award_id":"RIKEN","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G7441249044","display_name":"\u8d85\u4e26\u5217\u8a08\u7b97\u74b0\u5883\u306b\u3088\u308b\u30ab\u30a4\u30b3\u30ac\u8133\u55c5\u899a\uff0d\u904b\u52d5\u7cfb\u795e\u7d4c\u56de\u8def\u306e\u518d\u69cb\u7bc9\u3068\u305d\u306e\u691c\u8a3c","funder_award_id":"16J09788","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G747270940","display_name":null,"funder_award_id":"25330342","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G8392527626","display_name":null,"funder_award_id":"268032","funder_id":"https://openalex.org/F4320320212","funder_display_name":"Japan Society for the Promotion of Science London"},{"id":"https://openalex.org/G848013764","display_name":null,"funder_award_id":"25560428","funder_id":"https://openalex.org/F4320320212","funder_display_name":"Japan Society for the Promotion of Science London"},{"id":"https://openalex.org/G8922069002","display_name":"Gene expression analyses in the mouse digital brain for understanding molecular bases of higher motor disfunction","funder_award_id":"26280110","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320311508","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54"},{"id":"https://openalex.org/F4320320212","display_name":"Japan Society for the Promotion of Science London","ror":"https://ror.org/02m7axw05"},{"id":"https://openalex.org/F4320320332","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90"},{"id":"https://openalex.org/F4320322832","display_name":"University of Tokyo","ror":"https://ror.org/057zh3y96"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320335125","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98"},{"id":"https://openalex.org/F4320337741","display_name":"RIKEN Brain Science Institute","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2899191663.pdf","grobid_xml":"https://content.openalex.org/works/W2899191663.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1965626594","https://openalex.org/W2020541351","https://openalex.org/W2026527241","https://openalex.org/W2041396542","https://openalex.org/W2043751753","https://openalex.org/W2048606831","https://openalex.org/W2050354603","https://openalex.org/W2084772990","https://openalex.org/W2123273050","https://openalex.org/W2123491442","https://openalex.org/W2126867710","https://openalex.org/W2162142896","https://openalex.org/W2775373536","https://openalex.org/W6600057629"],"related_works":["https://openalex.org/W17698779","https://openalex.org/W143348934","https://openalex.org/W2170081145","https://openalex.org/W2610440445","https://openalex.org/W2108101990","https://openalex.org/W4236673163","https://openalex.org/W2039343069","https://openalex.org/W1982193071","https://openalex.org/W2094822553","https://openalex.org/W2170728496"],"abstract_inverted_index":{"Understanding":[0],"anatomical":[1,61,156],"structures":[2,62],"and":[3,50,76,99,125,146,155,191],"biological":[4],"functions":[5],"based":[6],"on":[7],"gene":[8,56,73],"expression":[9,57,74,83,118,167],"is":[10,140,192],"critical":[11],"in":[12,30,58,127,142,147,161],"a":[13,31,101,113,170],"systemic":[14],"approach":[15],"to":[16,38,60,88],"address":[17],"the":[18,21,89,107,128,143,162],"complexity":[19],"of":[20,71,85,92,115,120,131,138,165],"mammalian":[22],"brain,":[23],"where":[24],">25":[25],"000":[26],"genes":[27,35],"are":[28,36,63,159,179],"expressed":[29],"precise":[32],"manner.":[33],"Co-expressed":[34],"thought":[37],"regulate":[39],"cell":[40],"type-":[41],"or":[42],"region-specific":[43],"brain":[44],"functions.":[45],"Thus,":[46],"well-designed":[47],"data":[48],"acquisition":[49],"visualization":[51,78],"systems":[52],"for":[53],"profiling":[54],"combinatorial":[55],"relation":[59],"crucial.":[64],"To":[65],"this":[66],"purpose,":[67],"using":[68,169,181],"our":[69],"techniques":[70],"microtomy-based":[72],"measurements":[75],"WebGL-based":[77],"programs,":[79],"we":[80],"mapped":[81],"spatial":[82],"densities":[84],"genome-wide":[86],"transcripts":[87,139],"3D":[90,132,166],"coordinates":[91],"mouse":[93],"brains":[94],"at":[95],"four":[96],"post-natal":[97],"stages,":[98],"built":[100],"database,":[102],"ViBrism":[103],"DB":[104,108,187],"(http://vibrism.neuroinf.jp/).":[105],"With":[106],"platform,":[109],"users":[110],"can":[111],"access":[112],"total":[114],"172":[116],"022":[117],"maps":[119,158,168],"transcripts,":[121],"including":[122,183],"coding,":[123],"non-coding":[124],"lncRNAs":[126],"whole":[129],"context":[130],"magnetic":[133],"resonance":[134],"(MR)":[135],"images.":[136],"Co-expression":[137],"represented":[141],"image":[144],"space":[145,164],"topological":[148],"network":[149],"graphs.":[150],"In":[151],"situ":[152],"hybridization":[153],"images":[154,178],"area":[157],"browsable":[160],"same":[163],"new":[171],"browser-based":[172],"2D/3D":[173],"viewer,":[174],"BAH":[175],"viewer.":[176],"Created":[177],"shareable":[180],"URLs,":[182],"scene-setting":[184],"parameters.":[185],"The":[186],"has":[188],"multiple":[189],"links":[190],"expandable":[193],"by":[194],"community":[195],"activity.":[196]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
