{"id":"https://openalex.org/W2895532240","doi":"https://doi.org/10.1093/nar/gky901","title":"IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes","display_name":"IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes","publication_year":2018,"publication_date":"2018-09-24","ids":{"openalex":"https://openalex.org/W2895532240","doi":"https://doi.org/10.1093/nar/gky901","mag":"2895532240","pmid":"https://pubmed.ncbi.nlm.nih.gov/30289528"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gky901","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky901","pdf_url":"https://academic.oup.com/nar/article-pdf/47/D1/D666/27436299/gky901.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/47/D1/D666/27436299/gky901.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050011808","display_name":"I-Min A. Chen","orcid":"https://orcid.org/0000-0003-2026-9798"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"I-Min A Chen","raw_affiliation_strings":["Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040496456","display_name":"Ken Chu","orcid":"https://orcid.org/0000-0002-9602-1433"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ken Chu","raw_affiliation_strings":["Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038974860","display_name":"Krishna Palaniappan","orcid":"https://orcid.org/0000-0003-4484-7505"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Krishna Palaniappan","raw_affiliation_strings":["Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091437166","display_name":"Manoj Pillay","orcid":null},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Manoj Pillay","raw_affiliation_strings":["Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075093246","display_name":"Anna Ratner","orcid":"https://orcid.org/0000-0001-8877-2002"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anna Ratner","raw_affiliation_strings":["Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103156781","display_name":"Jinghua Huang","orcid":"https://orcid.org/0000-0003-4618-0249"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jinghua Huang","raw_affiliation_strings":["Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016953798","display_name":"Marcel Huntemann","orcid":"https://orcid.org/0000-0002-1284-3748"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marcel Huntemann","raw_affiliation_strings":["Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058400793","display_name":"Neha Varghese","orcid":"https://orcid.org/0000-0003-0580-0675"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Neha Varghese","raw_affiliation_strings":["Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048216930","display_name":"James R. White","orcid":"https://orcid.org/0000-0002-7535-9179"},"institutions":[{"id":"https://openalex.org/I4210158189","display_name":"Resphera Biosciences","ror":"https://ror.org/0519z1231","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210158189"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James R White","raw_affiliation_strings":["Resphera Biosciences, Baltimore, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Resphera Biosciences, Baltimore, MD, USA","institution_ids":["https://openalex.org/I4210158189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051691999","display_name":"R. Seshadri","orcid":"https://orcid.org/0000-0003-3219-2900"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rekha Seshadri","raw_affiliation_strings":["Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021107850","display_name":"Tatyana I. Smirnova","orcid":"https://orcid.org/0000-0001-7867-7116"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tatyana Smirnova","raw_affiliation_strings":["Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004153958","display_name":"Edward Kirton","orcid":"https://orcid.org/0000-0003-1974-1768"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edward Kirton","raw_affiliation_strings":["Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009270171","display_name":"Sean P. Jungbluth","orcid":"https://orcid.org/0000-0001-9265-8341"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sean P Jungbluth","raw_affiliation_strings":["Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006298901","display_name":"Tanja Woyke","orcid":"https://orcid.org/0000-0002-9485-5637"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tanja Woyke","raw_affiliation_strings":["Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058414477","display_name":"Emiley A. Eloe\u2010Fadrosh","orcid":"https://orcid.org/0000-0002-8162-1276"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Emiley A Eloe-Fadrosh","raw_affiliation_strings":["Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085966412","display_name":"Natalia Ivanova","orcid":"https://orcid.org/0000-0002-5802-9485"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Natalia N Ivanova","raw_affiliation_strings":["Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023696415","display_name":"Nikos C. Kyrpides","orcid":"https://orcid.org/0000-0002-6131-0462"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nikos C Kyrpides","raw_affiliation_strings":["Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Energy, Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":17,"corresponding_author_ids":["https://openalex.org/A5023696415","https://openalex.org/A5050011808","https://openalex.org/A5085966412"],"corresponding_institution_ids":["https://openalex.org/I196679689"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":51.9627,"has_fulltext":true,"cited_by_count":912,"citation_normalized_percentile":{"value":0.99943098,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"47","issue":"D1","first_page":"D666","last_page":"D677"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9750000238418579,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/img","display_name":"IMG","score":0.782014012336731},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6990475654602051},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6818326711654663},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.5003907680511475},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44333115220069885},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3444148302078247},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2709241807460785},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.24199947714805603},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18322667479515076},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.09166774153709412}],"concepts":[{"id":"https://openalex.org/C126249665","wikidata":"https://www.wikidata.org/wiki/Q3146723","display_name":"IMG","level":2,"score":0.782014012336731},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6990475654602051},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6818326711654663},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.5003907680511475},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44333115220069885},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3444148302078247},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2709241807460785},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.24199947714805603},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18322667479515076},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.09166774153709412}],"mesh":[{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000079803","descriptor_name":"Data Management","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":9,"locations":[{"id":"doi:10.1093/nar/gky901","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky901","pdf_url":"https://academic.oup.com/nar/article-pdf/47/D1/D666/27436299/gky901.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:30289528","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30289528","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:osti.gov:1542357","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1542357","pdf_url":"https://www.osti.gov/servlets/purl/1542357","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:ark:/13030/qt7hc8b5xx","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt7hc8b5xx","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/7hc8b5xx","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic acids research, vol 47, iss D1","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5301976","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6323987","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6323987","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6323987","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:qt7hc8b5xx","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/7hc8b5xx","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Chen, IMA; Chu, K; Palaniappan, K; Pillay, M; Ratner, A; Huang, J; \u00a0et al.(2019). IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes. Nucleic acids research, 47(D1), D666 - D677. doi: 10.1093/nar/gky901. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/7hc8b5xx","raw_type":"article"},{"id":"doi:10.25504/fairsharing.ae956n","is_oa":true,"landing_page_url":"https://doi.org/10.25504/fairsharing.ae956n","pdf_url":null,"source":{"id":"https://openalex.org/S7407053452","display_name":"FAIRsharing.org","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.1093/nar/gky901","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky901","pdf_url":"https://academic.oup.com/nar/article-pdf/47/D1/D666/27436299/gky901.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.44999998807907104},{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.4399999976158142}],"awards":[{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1337544421","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4565140552","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G6348972864","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7368046788","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7629237052","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G7787287669","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337509","display_name":"Biological and Environmental Research","ror":"https://ror.org/0114b2m14"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2895532240.pdf","grobid_xml":"https://content.openalex.org/works/W2895532240.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W404240460","https://openalex.org/W1573234480","https://openalex.org/W1584790813","https://openalex.org/W1661708608","https://openalex.org/W1722029454","https://openalex.org/W1972978214","https://openalex.org/W1976325156","https://openalex.org/W1982213106","https://openalex.org/W1986555327","https://openalex.org/W2062989416","https://openalex.org/W2069541198","https://openalex.org/W2089047063","https://openalex.org/W2101291993","https://openalex.org/W2110065044","https://openalex.org/W2110256992","https://openalex.org/W2111119053","https://openalex.org/W2112364185","https://openalex.org/W2121229732","https://openalex.org/W2121918723","https://openalex.org/W2127391962","https://openalex.org/W2128601422","https://openalex.org/W2136632285","https://openalex.org/W2141152740","https://openalex.org/W2143485490","https://openalex.org/W2146312020","https://openalex.org/W2162758337","https://openalex.org/W2214186913","https://openalex.org/W2224056471","https://openalex.org/W2294353708","https://openalex.org/W2343913565","https://openalex.org/W2530896378","https://openalex.org/W2542090653","https://openalex.org/W2543855063","https://openalex.org/W2558253576","https://openalex.org/W2559418591","https://openalex.org/W2609551972","https://openalex.org/W2735611463","https://openalex.org/W2745006471","https://openalex.org/W2753961085","https://openalex.org/W2754579667","https://openalex.org/W2766848373","https://openalex.org/W2773939681","https://openalex.org/W2895532240","https://openalex.org/W4230612179","https://openalex.org/W4237114091","https://openalex.org/W4242729757","https://openalex.org/W4251742697","https://openalex.org/W6613934775","https://openalex.org/W6833387226"],"related_works":["https://openalex.org/W2210738511","https://openalex.org/W2487541429","https://openalex.org/W1910109602","https://openalex.org/W2080583581","https://openalex.org/W4297131566","https://openalex.org/W2017364432","https://openalex.org/W2329606903","https://openalex.org/W3156493549","https://openalex.org/W3195915274","https://openalex.org/W3158976456"],"abstract_inverted_index":{"The":[0],"Integrated":[1],"Microbial":[2],"Genomes":[3],"&":[4],"Microbiomes":[5],"system":[6,114],"v.5.0":[7,158],"(IMG/M:":[8],"https://img.jgi.doe.gov/m/)":[9],"contains":[10],"annotated":[11],"datasets":[12,31,130],"categorized":[13],"into:":[14],"archaea,":[15],"bacteria,":[16],"eukarya,":[17],"plasmids,":[18],"viruses,":[19],"genome":[20,165],"fragments,":[21],"metagenomes,":[22],"cell":[23],"enrichments,":[24],"single":[25],"particle":[26],"sorts,":[27],"and":[28,66,83,92,125,135,162,171],"metatranscriptomes.":[29],"Source":[30],"include":[32],"those":[33],"generated":[34],"by":[35,43,144],"the":[36,62,70,105,147,152],"DOE's":[37],"Joint":[38],"Genome":[39],"Institute":[40],"(JGI),":[41],"submitted":[42],"external":[44],"scientists,":[45],"or":[46],"collected":[47],"from":[48],"public":[49,102],"sequence":[50],"data":[51,72,107,140],"archives":[52],"such":[53],"as":[54],"NCBI.":[55],"All":[56],"submissions":[57],"are":[58],"typically":[59],"processed":[60],"through":[61],"IMG":[63,71,106],"annotation":[64],"pipeline":[65],"then":[67],"loaded":[68],"into":[69],"warehouse.":[73],"IMG's":[74],"web":[75],"user":[76],"interface":[77],"provides":[78],"a":[79,160],"variety":[80],"of":[81,89],"analytical":[82],"visualization":[84],"tools":[85],"for":[86,133,136],"comparative":[87],"analysis":[88],"isolate":[90],"genomes":[91,103,124],"metagenomes":[93],"in":[94,104,131,151],"IMG.":[95],"IMG/M":[96,139,157],"allows":[97,117],"open":[98],"access":[99,121],"to":[100,120,126],"all":[101],"warehouse,":[108],"while":[109],"its":[110],"expert":[111],"review":[112],"(ER)":[113],"(IMG/MER:":[115],"https://img.jgi.doe.gov/mer/)":[116],"registered":[118],"users":[119],"their":[122,128],"private":[123,129],"store":[127],"workspace":[132],"sharing":[134],"further":[137],"analysis.":[138],"content":[141],"has":[142,159],"grown":[143],"60%":[145],"since":[146],"last":[148],"report":[149],"published":[150],"2017":[153],"NAR":[154],"Database":[155],"Issue.":[156],"new":[161,168],"more":[163],"powerful":[164],"search":[166],"feature,":[167],"statistical":[169],"tools,":[170],"supports":[172],"metagenome":[173],"binning.":[174]},"counts_by_year":[{"year":2026,"cited_by_count":21},{"year":2025,"cited_by_count":66},{"year":2024,"cited_by_count":63},{"year":2023,"cited_by_count":82},{"year":2022,"cited_by_count":124},{"year":2021,"cited_by_count":199},{"year":2020,"cited_by_count":237},{"year":2019,"cited_by_count":116},{"year":2018,"cited_by_count":3},{"year":2015,"cited_by_count":1}],"updated_date":"2026-05-11T08:15:01.531666","created_date":"2018-10-12T00:00:00"}