{"id":"https://openalex.org/W2808582129","doi":"https://doi.org/10.1093/nar/gky511","title":"KnotGenome:\u00a0a server to analyze entanglements of chromosomes","display_name":"KnotGenome:\u00a0a server to analyze entanglements of chromosomes","publication_year":2018,"publication_date":"2018-05-23","ids":{"openalex":"https://openalex.org/W2808582129","doi":"https://doi.org/10.1093/nar/gky511","mag":"2808582129","pmid":"https://pubmed.ncbi.nlm.nih.gov/29905836"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gky511","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky511","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W17/25110790/gky511.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/46/W1/W17/25110790/gky511.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013867366","display_name":"Joanna I. Su\u0142kowska","orcid":"https://orcid.org/0000-0003-2452-0724"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Joanna I Sulkowska","raw_affiliation_strings":["Centre of New Technologies, University of Warsaw, Banacha 2c,\u00a002-097 Warsaw, Poland","Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Centre of New Technologies, University of Warsaw, Banacha 2c,\u00a002-097 Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023614959","display_name":"Szymon Niewieczerza\u0142","orcid":"https://orcid.org/0000-0002-7563-7212"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Szymon Niewieczerzal","raw_affiliation_strings":["Centre of New Technologies, University of Warsaw, Banacha 2c,\u00a002-097 Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Centre of New Technologies, University of Warsaw, Banacha 2c,\u00a002-097 Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023937063","display_name":"Aleksandra I. Jarmolinska","orcid":"https://orcid.org/0000-0002-1259-3611"},"institutions":[{"id":"https://openalex.org/I4210161028","display_name":"College of Europe, Warsaw","ror":"https://ror.org/055560x25","country_code":"PL","type":"education","lineage":["https://openalex.org/I172363630","https://openalex.org/I4210161028"]},{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Aleksandra I Jarmolinska","raw_affiliation_strings":["Centre of New Technologies, University of Warsaw, Banacha 2c,\u00a002-097 Warsaw, Poland","College of Inter-Faculty Individual Studies in Mathematics and Natural Sciences, University of Warsaw, Banacha 2c, 02-097 Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Centre of New Technologies, University of Warsaw, Banacha 2c,\u00a002-097 Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"College of Inter-Faculty Individual Studies in Mathematics and Natural Sciences, University of Warsaw, Banacha 2c, 02-097 Warsaw, Poland","institution_ids":["https://openalex.org/I4210161028","https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085502913","display_name":"J. Siebert","orcid":"https://orcid.org/0000-0002-6067-1258"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jonathan T Siebert","raw_affiliation_strings":["Johannes Gutenberg-Universit\u00e4t Mainz, Institut f\u00fcr Physik, Staudingerweg 9, Mainz, 55128, Germany"],"affiliations":[{"raw_affiliation_string":"Johannes Gutenberg-Universit\u00e4t Mainz, Institut f\u00fcr Physik, Staudingerweg 9, Mainz, 55128, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014387498","display_name":"Peter Virnau","orcid":"https://orcid.org/0000-0003-2340-3884"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Peter Virnau","raw_affiliation_strings":["Johannes Gutenberg-Universit\u00e4t Mainz, Institut f\u00fcr Physik, Staudingerweg 9, Mainz, 55128, Germany"],"affiliations":[{"raw_affiliation_string":"Johannes Gutenberg-Universit\u00e4t Mainz, Institut f\u00fcr Physik, Staudingerweg 9, Mainz, 55128, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058049197","display_name":"Wanda Niemyska","orcid":"https://orcid.org/0000-0003-4167-1807"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Wanda Niemyska","raw_affiliation_strings":["Centre of New Technologies, University of Warsaw, Banacha 2c,\u00a002-097 Warsaw, Poland","Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Banacha 2,\u00a002-097 Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"Centre of New Technologies, University of Warsaw, Banacha 2c,\u00a002-097 Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Banacha 2,\u00a002-097 Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5013867366"],"corresponding_institution_ids":["https://openalex.org/I4654613"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.1331,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.88875075,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"46","issue":"W1","first_page":"W17","last_page":"W24"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12536","display_name":"Topological and Geometric Data Analysis","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12536","display_name":"Topological and Geometric Data Analysis","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10304","display_name":"Geometric and Algebraic Topology","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/2608","display_name":"Geometry and Topology"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7809823751449585},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.5638097524642944},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4705871641635895},{"id":"https://openalex.org/keywords/prime","display_name":"Prime (order theory)","score":0.45472991466522217},{"id":"https://openalex.org/keywords/knot","display_name":"Knot (papermaking)","score":0.4404083788394928},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3724169433116913},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.28774282336235046},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16713181138038635},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12431448698043823}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7809823751449585},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.5638097524642944},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4705871641635895},{"id":"https://openalex.org/C184992742","wikidata":"https://www.wikidata.org/wiki/Q7243229","display_name":"Prime (order theory)","level":2,"score":0.45472991466522217},{"id":"https://openalex.org/C2779863119","wikidata":"https://www.wikidata.org/wiki/Q6423048","display_name":"Knot (papermaking)","level":2,"score":0.4404083788394928},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3724169433116913},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.28774282336235046},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16713181138038635},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12431448698043823},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C42360764","wikidata":"https://www.wikidata.org/wiki/Q83588","display_name":"Chemical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D011119","descriptor_name":"Polynucleotides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011119","descriptor_name":"Polynucleotides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011119","descriptor_name":"Polynucleotides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011119","descriptor_name":"Polynucleotides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011119","descriptor_name":"Polynucleotides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011119","descriptor_name":"Polynucleotides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gky511","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky511","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W17/25110790/gky511.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:29905836","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29905836","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:4991295","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6030981","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gky511","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky511","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W17/25110790/gky511.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3756348218","display_name":null,"funder_award_id":"2057","funder_id":"https://openalex.org/F4320321673","funder_display_name":"EMBO"},{"id":"https://openalex.org/G4011325405","display_name":null,"funder_award_id":"501-D313-86-0117000-03","funder_id":"https://openalex.org/F4320312036","funder_display_name":"Diagnostic Services Manitoba"},{"id":"https://openalex.org/G8331654004","display_name":null,"funder_award_id":"2012/07/E/NZ1/01900","funder_id":"https://openalex.org/F4320322650","funder_display_name":"Narodowym Centrum Nauki"}],"funders":[{"id":"https://openalex.org/F4320312036","display_name":"Diagnostic Services Manitoba","ror":"https://ror.org/00yqy0q42"},{"id":"https://openalex.org/F4320321673","display_name":"EMBO","ror":"https://ror.org/04wfr2810"},{"id":"https://openalex.org/F4320322650","display_name":"Narodowym Centrum Nauki","ror":"https://ror.org/03ha2q922"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2808582129.pdf","grobid_xml":"https://content.openalex.org/works/W2808582129.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W86039670","https://openalex.org/W1966078827","https://openalex.org/W1974873337","https://openalex.org/W1983357705","https://openalex.org/W1985768873","https://openalex.org/W2003622649","https://openalex.org/W2012083162","https://openalex.org/W2012944471","https://openalex.org/W2019218232","https://openalex.org/W2050679015","https://openalex.org/W2078510672","https://openalex.org/W2081480012","https://openalex.org/W2111032472","https://openalex.org/W2125138250","https://openalex.org/W2127408623","https://openalex.org/W2154083418","https://openalex.org/W2155075558","https://openalex.org/W2342906045","https://openalex.org/W2502622622","https://openalex.org/W2523898334","https://openalex.org/W2543748880","https://openalex.org/W2553019085","https://openalex.org/W2594458869","https://openalex.org/W2597274540","https://openalex.org/W2741640225","https://openalex.org/W2745769213","https://openalex.org/W2755698155","https://openalex.org/W2770251499","https://openalex.org/W2910033432","https://openalex.org/W2963019220","https://openalex.org/W6631331479","https://openalex.org/W6758245806"],"related_works":["https://openalex.org/W2089898665","https://openalex.org/W2006566573","https://openalex.org/W2982222539","https://openalex.org/W2091350132","https://openalex.org/W2065321987","https://openalex.org/W4298359495","https://openalex.org/W2071902325","https://openalex.org/W2280037137","https://openalex.org/W1560513215","https://openalex.org/W3104514599"],"abstract_inverted_index":{"The":[0,34],"KnotGenome":[1,103],"server":[2],"enables":[3],"the":[4,38,43,51,55,71,76,101],"topological":[5],"analysis":[6],"of":[7,15,37,45,54,60,62,70],"chromosome":[8,39],"model":[9],"data":[10],"using":[11],"three-dimensional":[12],"coordinate":[13],"files":[14],"chromosomes":[16,80],"as":[17],"input.":[18],"In":[19],"particular,":[20],"it":[21],"detects":[22],"prime":[23],"and":[24,30,59,75],"composite":[25],"knots":[26],"in":[27,42,84],"single":[28],"chromosomes,":[29],"links":[31],"between":[32],"chromosomes.":[33],"knotting":[35],"complexity":[36],"is":[40,89,104],"presented":[41,82],"form":[44],"a":[46],"matrix":[47],"diagram":[48],"that":[49],"reveals":[50],"knot":[52],"type":[53],"entire":[56],"polynucleotide":[57],"chain":[58],"each":[61],"its":[63],"subchains.":[64],"Links":[65],"are":[66,81],"determined":[67],"by":[68],"means":[69],"Gaussian":[72],"linking":[73],"integral":[74],"HOMFLY-PT":[77],"polynomial.":[78],"Entangled":[79],"graphically":[83],"an":[85],"intuitive":[86],"way.":[87],"It":[88],"also":[90],"possible":[91],"to":[92],"relax":[93],"structure":[94],"with":[95],"short":[96],"molecular":[97],"dynamics":[98],"runs":[99],"before":[100],"analysis.":[102],"freely":[105],"available":[106],"at":[107],"http://knotgenom.cent.uw.edu.pl/.":[108]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":5}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
