{"id":"https://openalex.org/W2808042160","doi":"https://doi.org/10.1093/nar/gky467","title":"The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level","display_name":"The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level","publication_year":2018,"publication_date":"2018-05-24","ids":{"openalex":"https://openalex.org/W2808042160","doi":"https://doi.org/10.1093/nar/gky467","mag":"2808042160","pmid":"https://pubmed.ncbi.nlm.nih.gov/29905870"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gky467","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky467","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W282/25110319/gky467.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/46/W1/W282/25110319/gky467.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003227888","display_name":"Luis M. Rodriguez\u2010R","orcid":"https://orcid.org/0000-0001-7603-3093"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luis M Rodriguez-R","raw_affiliation_strings":["School of Civil and Environmental Engineering, Georgia Institute of Technology, 311 Ferst Dr. NW, Atlanta, GA 30332, USA"],"affiliations":[{"raw_affiliation_string":"School of Civil and Environmental Engineering, Georgia Institute of Technology, 311 Ferst Dr. NW, Atlanta, GA 30332, USA","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060007019","display_name":"Santosh Gunturu","orcid":null},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Santosh Gunturu","raw_affiliation_strings":["Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA"],"affiliations":[{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006507082","display_name":"William T. Harvey","orcid":"https://orcid.org/0000-0001-9529-1127"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William T Harvey","raw_affiliation_strings":["School of Civil and Environmental Engineering, Georgia Institute of Technology, 311 Ferst Dr. NW, Atlanta, GA 30332, USA"],"affiliations":[{"raw_affiliation_string":"School of Civil and Environmental Engineering, Georgia Institute of Technology, 311 Ferst Dr. NW, Atlanta, GA 30332, USA","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064105551","display_name":"Ramon Rossell\u00f3\u2010M\u00f3ra","orcid":"https://orcid.org/0000-0001-8253-3107"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I4210116941","display_name":"Mediterranean Institute for Advanced Studies","ror":"https://ror.org/02e9dby02","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210116941","https://openalex.org/I50441567"]},{"id":"https://openalex.org/I50441567","display_name":"Universitat de les Illes Balears","ror":"https://ror.org/03e10x626","country_code":"ES","type":"education","lineage":["https://openalex.org/I50441567"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ramon Rossell\u00f3-Mora","raw_affiliation_strings":["Grup de Microbiologia Marina, Institut Mediterrani d\u2019Estudis Avan\u00e7ats (IMEDEA), Universitat de les Illes Balears (UIB) and Consejo Superior de Investigaciones Cient\u00edficas (CSIC), C/Miquel Marques 21, 07190 Esporles, Illes Balears, Spain"],"affiliations":[{"raw_affiliation_string":"Grup de Microbiologia Marina, Institut Mediterrani d\u2019Estudis Avan\u00e7ats (IMEDEA), Universitat de les Illes Balears (UIB) and Consejo Superior de Investigaciones Cient\u00edficas (CSIC), C/Miquel Marques 21, 07190 Esporles, Illes Balears, Spain","institution_ids":["https://openalex.org/I4210116941","https://openalex.org/I134820265","https://openalex.org/I50441567"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041807449","display_name":"James M. Tiedje","orcid":"https://orcid.org/0000-0002-8992-6218"},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James M Tiedje","raw_affiliation_strings":["Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA","Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA"],"affiliations":[{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104055957","display_name":"James R. Cole","orcid":null},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James R Cole","raw_affiliation_strings":["Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA"],"affiliations":[{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087588208","display_name":"Konstantinos T. Konstantinidis","orcid":"https://orcid.org/0000-0002-0954-4755"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Konstantinos T Konstantinidis","raw_affiliation_strings":["School of Biological Sciences, Georgia Institute of Technology, 310 Ferst Dr. NW, Atlanta, GA 30332, USA","School of Civil and Environmental Engineering, Georgia Institute of Technology, 311 Ferst Dr. NW, Atlanta, GA 30332, USA"],"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, Georgia Institute of Technology, 310 Ferst Dr. NW, Atlanta, GA 30332, USA","institution_ids":["https://openalex.org/I130701444"]},{"raw_affiliation_string":"School of Civil and Environmental Engineering, Georgia Institute of Technology, 311 Ferst Dr. NW, Atlanta, GA 30332, USA","institution_ids":["https://openalex.org/I130701444"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5087588208"],"corresponding_institution_ids":["https://openalex.org/I130701444"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":24.4815,"has_fulltext":true,"cited_by_count":599,"citation_normalized_percentile":{"value":0.99766795,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"46","issue":"W1","first_page":"W282","last_page":"W288"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8592378497123718},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.795744776725769},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.6654080152511597},{"id":"https://openalex.org/keywords/clade","display_name":"Clade","score":0.5503633618354797},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5447259545326233},{"id":"https://openalex.org/keywords/ribosomal-rna","display_name":"Ribosomal RNA","score":0.5272815823554993},{"id":"https://openalex.org/keywords/archaea","display_name":"Archaea","score":0.5026414394378662},{"id":"https://openalex.org/keywords/taxonomic-rank","display_name":"Taxonomic rank","score":0.484081894159317},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.47081977128982544},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4607364535331726},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4472535252571106},{"id":"https://openalex.org/keywords/bacterial-genome-size","display_name":"Bacterial genome size","score":0.42377960681915283},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.4044334888458252},{"id":"https://openalex.org/keywords/taxon","display_name":"Taxon","score":0.1839166283607483},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.15236178040504456}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8592378497123718},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.795744776725769},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.6654080152511597},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.5503633618354797},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5447259545326233},{"id":"https://openalex.org/C67905577","wikidata":"https://www.wikidata.org/wiki/Q215980","display_name":"Ribosomal RNA","level":3,"score":0.5272815823554993},{"id":"https://openalex.org/C550995028","wikidata":"https://www.wikidata.org/wiki/Q10872","display_name":"Archaea","level":3,"score":0.5026414394378662},{"id":"https://openalex.org/C189592816","wikidata":"https://www.wikidata.org/wiki/Q427626","display_name":"Taxonomic rank","level":3,"score":0.484081894159317},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.47081977128982544},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4607364535331726},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4472535252571106},{"id":"https://openalex.org/C3742359","wikidata":"https://www.wikidata.org/wiki/Q4839988","display_name":"Bacterial genome size","level":4,"score":0.42377960681915283},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.4044334888458252},{"id":"https://openalex.org/C71640776","wikidata":"https://www.wikidata.org/wiki/Q16521","display_name":"Taxon","level":2,"score":0.1839166283607483},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.15236178040504456}],"mesh":[{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gky467","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky467","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W282/25110319/gky467.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:29905870","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29905870","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:4991306","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6031002","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gky467","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky467","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W282/25110319/gky467.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6499999761581421}],"awards":[{"id":"https://openalex.org/G2833091654","display_name":null,"funder_award_id":"1356380","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5157629427","display_name":null,"funder_award_id":"1356288","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6507447573","display_name":null,"funder_award_id":"several","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309321","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2808042160.pdf","grobid_xml":"https://content.openalex.org/works/W2808042160.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1992687107","https://openalex.org/W2045656688","https://openalex.org/W2089859322","https://openalex.org/W2097205777","https://openalex.org/W2119888547","https://openalex.org/W2120141270","https://openalex.org/W2121055398","https://openalex.org/W2124927293","https://openalex.org/W2127036970","https://openalex.org/W2128777911","https://openalex.org/W2134375163","https://openalex.org/W2141920662","https://openalex.org/W2143485490","https://openalex.org/W2152885278","https://openalex.org/W2333870360","https://openalex.org/W2587903786","https://openalex.org/W2736417223","https://openalex.org/W2783242770","https://openalex.org/W4252553099","https://openalex.org/W6661675247","https://openalex.org/W6702676306"],"related_works":["https://openalex.org/W1607298653","https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W4240162843","https://openalex.org/W2359440920","https://openalex.org/W200507450","https://openalex.org/W2150484441","https://openalex.org/W2176518797","https://openalex.org/W2564091220","https://openalex.org/W1949578167"],"abstract_inverted_index":{"The":[0],"small":[1],"subunit":[2],"ribosomal":[3],"RNA":[4],"gene":[5,153,170],"(16S":[6],"rRNA)":[7],"has":[8],"been":[9],"successfully":[10],"used":[11],"to":[12,81,113,150,176],"catalogue":[13],"and":[14,21,31,34,40,94,108,110,124,156,159,168,183,186,191],"study":[15],"the":[16,29,37,48,57,90,140,166],"diversity":[17,39,155,184],"of":[18,59,135,139,180],"prokaryotic":[19],"species":[20,30,145],"communities":[22],"but":[23],"it":[24],"offers":[25],"limited":[26],"resolution":[27],"at":[28,197],"finer":[32],"levels,":[33],"cannot":[35],"represent":[36],"whole-genome":[38],"fluidity.":[41],"To":[42],"overcome":[43],"these":[44],"limitations,":[45],"we":[46],"introduced":[47],"Microbial":[49],"Genomes":[50],"Atlas":[51],"(MiGA),":[52],"a":[53,178],"webserver":[54],"that":[55],"allows":[56,111],"classification":[58],"an":[60],"unknown":[61],"query":[62],"genomic":[63],"sequence,":[64],"complete":[65],"or":[66,117,142],"partial,":[67],"against":[68],"all":[69],"taxonomically":[70],"classified":[71],"taxa":[72],"with":[73],"available":[74,196],"genome":[75],"sequences,":[76,123],"as":[77,79,132,165],"well":[78],"comparisons":[80],"other":[82],"related":[83,137,144],"genomes":[84,126,138],"including":[85],"uncultivated":[86],"ones,":[87],"based":[88],"on":[89],"genome-aggregate":[91],"Average":[92],"Nucleotide":[93],"Amino":[95],"Acid":[96],"Identity":[97],"(ANI/AAI)":[98],"concepts.":[99],"MiGA":[100,129,173,194],"integrates":[101],"best":[102],"practices":[103],"in":[104],"sequence":[105],"quality":[106,187],"trimming":[107],"assembly":[109],"input":[112,133],"be":[114],"raw":[115],"reads":[116],"assemblies":[118],"from":[119],"isolate":[120],"genomes,":[121],"single-cell":[122],"metagenome-assembled":[125],"(MAGs).":[127],"Further,":[128],"can":[130],"take":[131],"hundreds":[134],"closely":[136,143],"same":[141],"(a":[146],"so-called":[147],"'Clade":[148],"Project')":[149],"assess":[151],"their":[152],"content":[154],"evolutionary":[157],"relationships,":[158],"calculate":[160],"important":[161],"clade":[162],"properties":[163],"such":[164],"pangenome":[167],"core":[169],"sets.":[171],"Therefore,":[172],"is":[174,195],"expected":[175],"facilitate":[177],"range":[179],"genome-based":[181],"taxonomic":[182],"studies,":[185],"assessment":[188],"across":[189],"environmental":[190],"clinical":[192],"settings.":[193],"http://microbial-genomes.org/.":[198]},"counts_by_year":[{"year":2026,"cited_by_count":21},{"year":2025,"cited_by_count":75},{"year":2024,"cited_by_count":84},{"year":2023,"cited_by_count":59},{"year":2022,"cited_by_count":93},{"year":2021,"cited_by_count":110},{"year":2020,"cited_by_count":94},{"year":2019,"cited_by_count":47},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
