{"id":"https://openalex.org/W2952143471","doi":"https://doi.org/10.1093/nar/gky466","title":"PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data","display_name":"PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data","publication_year":2018,"publication_date":"2018-05-16","ids":{"openalex":"https://openalex.org/W2952143471","doi":"https://doi.org/10.1093/nar/gky466","mag":"2952143471","pmid":"https://pubmed.ncbi.nlm.nih.gov/29800320"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gky466","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky466","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W503/25110248/gky466.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/46/W1/W503/25110248/gky466.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073969115","display_name":"Rafael Hern\u00e1ndez-de-Diego","orcid":"https://orcid.org/0000-0002-8489-8203"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Rafael Hern\u00e1ndez-de-Diego","raw_affiliation_strings":["Genomics of Gene Expression Lab, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics of Gene Expression Lab, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia, Spain","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079375335","display_name":"Sonia Tarazona","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]},{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Sonia Tarazona","raw_affiliation_strings":["Department of Applied Statistics, Operations Research and Quality, Universitat Polit\u00e8cnica de Val\u00e8ncia, Spain","Genomics of Gene Expression Lab, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Applied Statistics, Operations Research and Quality, Universitat Polit\u00e8cnica de Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I60053951"]},{"raw_affiliation_string":"Genomics of Gene Expression Lab, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia, Spain","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077938597","display_name":"Carlos Mart\u00ednez-Mira","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carlos Mart\u00ednez-Mira","raw_affiliation_strings":["Genomics of Gene Expression Lab, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics of Gene Expression Lab, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia, Spain","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020414220","display_name":"Leandro Balzano\u2010Nogueira","orcid":null},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leandro Balzano-Nogueira","raw_affiliation_strings":["Genetics Institute, University of Florida, Gainesville, FL,\u00a0USA","Microbiology and Cell Science Department, Institute for Food and Agricultural Sciences, University of Florida, Gainesville,\u00a0FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genetics Institute, University of Florida, Gainesville, FL,\u00a0USA","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Microbiology and Cell Science Department, Institute for Food and Agricultural Sciences, University of Florida, Gainesville,\u00a0FL, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008228503","display_name":"Pedro Furi\u00f3\u2010Tar\u00ed","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Pedro Furi\u00f3-Tar\u00ed","raw_affiliation_strings":["Genomics of Gene Expression Lab, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics of Gene Expression Lab, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia, Spain","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040984070","display_name":"\u0393\u03b5\u03ce\u03c1\u03b3\u03b9\u03bf\u03c2 \u03a0\u03b1\u03c0\u03c0\u03ac\u03c2","orcid":"https://orcid.org/0000-0002-1100-976X"},"institutions":[{"id":"https://openalex.org/I150729083","display_name":"Universidade de Bras\u00edlia","ror":"https://ror.org/02xfp8v59","country_code":"BR","type":"education","lineage":["https://openalex.org/I150729083"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Georgios J Pappas","raw_affiliation_strings":["Department of Cellular Biology, University of Brasilia, Biological Sciences Institute, Bras\u00edlia, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cellular Biology, University of Brasilia, Biological Sciences Institute, Bras\u00edlia, Brazil","institution_ids":["https://openalex.org/I150729083"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002377126","display_name":"Ana Conesa","orcid":"https://orcid.org/0000-0001-9597-311X"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]},{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES","US"],"is_corresponding":true,"raw_author_name":"Ana Conesa","raw_affiliation_strings":["Genetics Institute, University of Florida, Gainesville, FL,\u00a0USA","Genomics of Gene Expression Lab, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia, Spain","Microbiology and Cell Science Department, Institute for Food and Agricultural Sciences, University of Florida, Gainesville,\u00a0FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genetics Institute, University of Florida, Gainesville, FL,\u00a0USA","institution_ids":["https://openalex.org/I33213144"]},{"raw_affiliation_string":"Genomics of Gene Expression Lab, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia, Spain","institution_ids":["https://openalex.org/I4210165109"]},{"raw_affiliation_string":"Microbiology and Cell Science Department, Institute for Food and Agricultural Sciences, University of Florida, Gainesville,\u00a0FL, USA","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5002377126"],"corresponding_institution_ids":["https://openalex.org/I33213144","https://openalex.org/I4210165109"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":7.7338,"has_fulltext":true,"cited_by_count":178,"citation_normalized_percentile":{"value":0.98355269,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"46","issue":"W1","first_page":"W503","last_page":"W509"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.769329309463501},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7036160826683044},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5488218069076538},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5226028561592102},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.5106359124183655},{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.4834195375442505},{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.46868211030960083},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.44345685839653015},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4206119179725647},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4049155116081238},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.30444425344467163},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.27857351303100586},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.24076327681541443},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.12186339497566223}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.769329309463501},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7036160826683044},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5488218069076538},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5226028561592102},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.5106359124183655},{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.4834195375442505},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.46868211030960083},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44345685839653015},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4206119179725647},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4049155116081238},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.30444425344467163},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.27857351303100586},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.24076327681541443},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.12186339497566223},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D002461","descriptor_name":"Cell Line, Transformed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002461","descriptor_name":"Cell Line, Transformed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002461","descriptor_name":"Cell Line, Transformed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005347","descriptor_name":"Fibroblasts","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D005347","descriptor_name":"Fibroblasts","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D005347","descriptor_name":"Fibroblasts","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D005347","descriptor_name":"Fibroblasts","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005347","descriptor_name":"Fibroblasts","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005347","descriptor_name":"Fibroblasts","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D065150","descriptor_name":"Cellular Reprogramming","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D065150","descriptor_name":"Cellular Reprogramming","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D065150","descriptor_name":"Cellular Reprogramming","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gky466","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky466","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W503/25110248/gky466.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:4991287","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6030972","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmid:29800320","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29800320","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:riunet.upv.es:10251/121774","is_oa":true,"landing_page_url":"http://hdl.handle.net/10251/121774","pdf_url":"https://riunet.upv.es/bitstream/10251/121774/1/HernandezDeDiego_2018_PaintOmics3.pdf","source":{"id":"https://openalex.org/S4306400639","display_name":"RiuNet (Universitat Polit\u00e8cnica de Val\u00e8ncia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60053951","host_organization_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","host_organization_lineage":["https://openalex.org/I60053951"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gky466","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky466","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W503/25110248/gky466.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.5400000214576721,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G2076061757","display_name":"User-driven Development of Statistical Methods for Experimental Planning, Data Gathering, and Integrative Analysis of Next Generation Sequencing, Proteomics and Metabolomics data","funder_award_id":"306000","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2466190828","display_name":"Developing an European American NGS Network","funder_award_id":"612583","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G265847165","display_name":null,"funder_award_id":"FP7/2007\u20102013","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G3207356259","display_name":null,"funder_award_id":"2007\u20132013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G393177772","display_name":null,"funder_award_id":"FP7 2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4766049156","display_name":null,"funder_award_id":"306000-STATegra","funder_id":"https://openalex.org/F4320333065","funder_display_name":"Seventh Framework Programme"},{"id":"https://openalex.org/G496129201","display_name":null,"funder_award_id":"2007 \u2013 2013","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G5702163051","display_name":null,"funder_award_id":"FP7/2007","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6104069830","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G8955793745","display_name":null,"funder_award_id":"PT17/0009/0015","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320333065","display_name":"Seventh Framework Programme","ror":null},{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2952143471.pdf","grobid_xml":"https://content.openalex.org/works/W2952143471.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1665218804","https://openalex.org/W1954603895","https://openalex.org/W1986662234","https://openalex.org/W2036429797","https://openalex.org/W2072378785","https://openalex.org/W2092868481","https://openalex.org/W2096918186","https://openalex.org/W2099774431","https://openalex.org/W2125910575","https://openalex.org/W2126731419","https://openalex.org/W2141224543","https://openalex.org/W2144474117","https://openalex.org/W2153490111","https://openalex.org/W2159675211","https://openalex.org/W2169333371","https://openalex.org/W2287154159","https://openalex.org/W2307267906","https://openalex.org/W2326534788","https://openalex.org/W2556444953","https://openalex.org/W2612989432","https://openalex.org/W2900638853","https://openalex.org/W3045153201","https://openalex.org/W7073546209"],"related_works":["https://openalex.org/W1964572291","https://openalex.org/W4387948744","https://openalex.org/W184793361","https://openalex.org/W2352732738","https://openalex.org/W2123060905","https://openalex.org/W2559588208","https://openalex.org/W4318778067","https://openalex.org/W1923384484","https://openalex.org/W3120676751","https://openalex.org/W2159482845"],"abstract_inverted_index":{"The":[0,144],"increasing":[1],"availability":[2],"of":[3,14,50,70,86,125],"multi-omic":[4,31],"platforms":[5],"poses":[6],"new":[7],"challenges":[8],"to":[9,34],"data":[10,16,53,65,75],"analysis.":[11],"Joint":[12],"visualization":[13,49,92],"multi-omics":[15,88],"is":[17,146],"instrumental":[18],"in":[19,27],"better":[20],"understanding":[21],"interconnections":[22],"across":[23],"molecular":[24],"layers":[25],"and":[26,118,131],"fully":[28],"utilizing":[29],"the":[30,47,68],"resources":[32,73],"available":[33,148],"make":[35],"biological":[36],"discoveries.":[37],"We":[38],"present":[39],"here":[40],"PaintOmics":[41,59,94],"3,":[42],"a":[43,80,97,122],"web-based":[44],"resource":[45],"for":[46,64,74,83],"integrated":[48],"multiple":[51],"omic":[52,126],"types":[54],"onto":[55],"KEGG":[56],"pathway":[57,99,110],"diagrams.":[58],"3":[60,95],"combines":[61],"server-end":[62],"capabilities":[63],"analysis":[66,100],"with":[67,79],"potential":[69],"modern":[71],"web":[72],"visualization,":[76],"providing":[77],"researchers":[78],"powerful":[81],"framework":[82],"interactive":[84,114],"exploration":[85],"their":[87],"information.":[89],"Unlike":[90],"other":[91],"tools,":[93],"covers":[96],"comprehensive":[98],"workflow,":[101],"including":[102,128],"automatic":[103],"feature":[104,108],"name/identifier":[105],"conversion,":[106],"multi-layered":[107],"matching,":[109],"enrichment,":[111],"network":[112],"analysis,":[113],"heatmaps,":[115],"trend":[116],"charts,":[117],"more.":[119],"It":[120],"accepts":[121],"wide":[123],"variety":[124],"types,":[127],"transcriptomics,":[129],"proteomics":[130],"metabolomics,":[132],"as":[133,135,139],"well":[134],"region-based":[136],"approaches":[137],"such":[138],"ATAC-seq":[140],"or":[141],"ChIP-seq":[142],"data.":[143],"tool":[145],"freely":[147],"at":[149],"www.paintomics.org.":[150]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":25},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":35},{"year":2021,"cited_by_count":39},{"year":2020,"cited_by_count":31},{"year":2019,"cited_by_count":20},{"year":2018,"cited_by_count":4}],"updated_date":"2026-08-18T07:49:30.821534","created_date":"2025-10-10T00:00:00"}
