{"id":"https://openalex.org/W2804822363","doi":"https://doi.org/10.1093/nar/gky427","title":"SWISS-MODEL: homology modelling of protein structures and complexes","display_name":"SWISS-MODEL: homology modelling of protein structures and complexes","publication_year":2018,"publication_date":"2018-05-07","ids":{"openalex":"https://openalex.org/W2804822363","doi":"https://doi.org/10.1093/nar/gky427","mag":"2804822363","pmid":"https://pubmed.ncbi.nlm.nih.gov/29788355"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gky427","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky427","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W296/25110428/gky427.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/46/W1/W296/25110428/gky427.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039618816","display_name":"Andrew Waterhouse","orcid":"https://orcid.org/0009-0004-5717-6063"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Andrew Waterhouse","raw_affiliation_strings":["Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028126983","display_name":"Martino Bertoni","orcid":"https://orcid.org/0000-0003-0720-1027"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Martino Bertoni","raw_affiliation_strings":["Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059352304","display_name":"Stefan Bienert","orcid":"https://orcid.org/0000-0002-9673-9103"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Stefan Bienert","raw_affiliation_strings":["Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053683682","display_name":"Gabriel Studer","orcid":"https://orcid.org/0000-0003-0462-1456"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Gabriel Studer","raw_affiliation_strings":["Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090117521","display_name":"Gerardo Tauriello","orcid":"https://orcid.org/0000-0002-5921-7007"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Gerardo Tauriello","raw_affiliation_strings":["Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060490044","display_name":"Rafal Gumienny","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Rafal Gumienny","raw_affiliation_strings":["Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010147181","display_name":"Florian Heer","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Florian T Heer","raw_affiliation_strings":["Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034259396","display_name":"Tjaart de Beer","orcid":"https://orcid.org/0000-0001-5966-6091"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Tjaart A\u00a0P de\u00a0Beer","raw_affiliation_strings":["Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031325756","display_name":"Christine Rempfer","orcid":"https://orcid.org/0000-0002-0672-3897"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Christine Rempfer","raw_affiliation_strings":["Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086886315","display_name":"Lorenza Bordoli","orcid":"https://orcid.org/0000-0003-0875-1813"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Lorenza Bordoli","raw_affiliation_strings":["Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057595671","display_name":"Rosalba Lepore","orcid":"https://orcid.org/0000-0002-9481-2557"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Rosalba Lepore","raw_affiliation_strings":["Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049569891","display_name":"Torsten Schwede","orcid":"https://orcid.org/0000-0003-2715-335X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Torsten Schwede","raw_affiliation_strings":["Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50\u201370, CH-4056 Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5049569891"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":460.7045,"has_fulltext":true,"cited_by_count":13270,"citation_normalized_percentile":{"value":0.99998502,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"46","issue":"W1","first_page":"W296","last_page":"W303"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/homology-modeling","display_name":"Homology modeling","score":0.7111543416976929},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6637385487556458},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.644123911857605},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.639951229095459},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5692505836486816},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5553763508796692},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.453615665435791},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3739207088947296},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.31209927797317505},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.1734776496887207},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1683245599269867},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.13403838872909546}],"concepts":[{"id":"https://openalex.org/C169627665","wikidata":"https://www.wikidata.org/wiki/Q5767913","display_name":"Homology modeling","level":3,"score":0.7111543416976929},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6637385487556458},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.644123911857605},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.639951229095459},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5692505836486816},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5553763508796692},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.453615665435791},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3739207088947296},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.31209927797317505},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.1734776496887207},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1683245599269867},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.13403838872909546},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gky427","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky427","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W296/25110428/gky427.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:29788355","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29788355","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:edoc.unibas.ch:64205","is_oa":false,"landing_page_url":"https://edoc.unibas.ch/64205/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401836","display_name":"edoc (University of Basel)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1850255","host_organization_name":"University of Basel","host_organization_lineage":["https://openalex.org/I1850255"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:4991212","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6030848","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:iris.uniroma1.it:11573/1680137","is_oa":true,"landing_page_url":"https://hdl.handle.net/11573/1680137","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gky427","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky427","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W296/25110428/gky427.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5799999833106995}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310466","display_name":"Universit\u00e4t Basel","ror":"https://ror.org/02s6k3f65"},{"id":"https://openalex.org/F4320331322","display_name":"Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2804822363.pdf","grobid_xml":"https://content.openalex.org/works/W2804822363.grobid-xml"},"referenced_works_count":74,"referenced_works":["https://openalex.org/W12382117","https://openalex.org/W1588645461","https://openalex.org/W1757046366","https://openalex.org/W1843054844","https://openalex.org/W1869944834","https://openalex.org/W1903986304","https://openalex.org/W1967293793","https://openalex.org/W1981264193","https://openalex.org/W1982679430","https://openalex.org/W1993951624","https://openalex.org/W1995510302","https://openalex.org/W2011658408","https://openalex.org/W2012966511","https://openalex.org/W2013580208","https://openalex.org/W2015642465","https://openalex.org/W2018296380","https://openalex.org/W2020669016","https://openalex.org/W2021703339","https://openalex.org/W2038555943","https://openalex.org/W2039063819","https://openalex.org/W2047544230","https://openalex.org/W2050333027","https://openalex.org/W2051210555","https://openalex.org/W2054291744","https://openalex.org/W2055395356","https://openalex.org/W2060809301","https://openalex.org/W2065283382","https://openalex.org/W2069152576","https://openalex.org/W2069596790","https://openalex.org/W2074713036","https://openalex.org/W2081598613","https://openalex.org/W2101078720","https://openalex.org/W2106648157","https://openalex.org/W2108862316","https://openalex.org/W2115167726","https://openalex.org/W2115540209","https://openalex.org/W2120836664","https://openalex.org/W2124463526","https://openalex.org/W2128484254","https://openalex.org/W2137986227","https://openalex.org/W2140673705","https://openalex.org/W2142678478","https://openalex.org/W2144954642","https://openalex.org/W2146084306","https://openalex.org/W2149525061","https://openalex.org/W2149605074","https://openalex.org/W2152301430","https://openalex.org/W2154139219","https://openalex.org/W2155212694","https://openalex.org/W2158714788","https://openalex.org/W2159614853","https://openalex.org/W2163614321","https://openalex.org/W2164813401","https://openalex.org/W2167795220","https://openalex.org/W2171419407","https://openalex.org/W2285587551","https://openalex.org/W2405504822","https://openalex.org/W2558272290","https://openalex.org/W2573340705","https://openalex.org/W2590125722","https://openalex.org/W2610302091","https://openalex.org/W2746313716","https://openalex.org/W2750193626","https://openalex.org/W2751260413","https://openalex.org/W2766157941","https://openalex.org/W2766188130","https://openalex.org/W2770647690","https://openalex.org/W2783728269","https://openalex.org/W2949223833","https://openalex.org/W4210702584","https://openalex.org/W4234714728","https://openalex.org/W4239761798","https://openalex.org/W4240895940","https://openalex.org/W6743538218"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W188202134","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W4255934811","https://openalex.org/W2068608913","https://openalex.org/W3130075881"],"abstract_inverted_index":{"Homology":[0],"modelling":[1,35,55,76,93,133],"has":[2,88],"matured":[3],"into":[4],"an":[5,64],"important":[6],"technique":[7],"in":[8],"structural":[9],"biology,":[10],"significantly":[11],"contributing":[12],"to":[13,45,54,66,91],"narrowing":[14],"the":[15,33,67,72,92,101,106,110,113,117,128,137],"gap":[16],"between":[17],"known":[18],"protein":[19,48],"sequences":[20,104],"and":[21,28,31,50,59,80,96,112,136],"experimentally":[22],"determined":[23],"structures.":[24],"Fully":[25],"automated":[26,75],"workflows":[27],"servers":[29],"simplify":[30],"streamline":[32],"homology":[34,122],"process,":[36],"also":[37],"allowing":[38],"users":[39],"without":[40],"a":[41,131,139],"specific":[42],"computational":[43],"expertise":[44],"generate":[46],"reliable":[47],"models":[49],"have":[51],"easy":[52],"access":[53],"results,":[56],"their":[57],"visualization":[58],"interpretation.":[60],"Here,":[61],"we":[62],"present":[63],"update":[65],"SWISS-MODEL":[68,147],"server,":[69],"which":[70],"pioneered":[71],"field":[73],"of":[74,94,105,116,130],"25":[77],"years":[78],"ago":[79],"been":[81,89],"continuously":[82],"further":[83],"developed.":[84],"Recently,":[85],"its":[86],"functionality":[87],"extended":[90],"homo-":[95],"heteromeric":[97],"complexes.":[98],"Starting":[99],"from":[100],"amino":[102],"acid":[103],"interacting":[107],"proteins,":[108],"both":[109],"stoichiometry":[111],"overall":[114],"structure":[115],"complex":[118],"are":[119],"inferred":[120],"by":[121],"modelling.":[123],"Other":[124],"major":[125],"improvements":[126],"include":[127],"implementation":[129],"new":[132,140],"engine,":[134],"ProMod3":[135],"introduction":[138],"local":[141],"model":[142],"quality":[143],"estimation":[144],"method,":[145],"QMEANDisCo.":[146],"is":[148],"freely":[149],"available":[150],"at":[151],"https://swissmodel.expasy.org.":[152]},"counts_by_year":[{"year":2026,"cited_by_count":432},{"year":2025,"cited_by_count":1880},{"year":2024,"cited_by_count":2072},{"year":2023,"cited_by_count":1905},{"year":2022,"cited_by_count":2101},{"year":2021,"cited_by_count":2125},{"year":2020,"cited_by_count":1761},{"year":2019,"cited_by_count":852},{"year":2018,"cited_by_count":116},{"year":2017,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
