{"id":"https://openalex.org/W2917207851","doi":"https://doi.org/10.1093/nar/gky379","title":"The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update","display_name":"The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update","publication_year":2018,"publication_date":"2018-05-03","ids":{"openalex":"https://openalex.org/W2917207851","doi":"https://doi.org/10.1093/nar/gky379","mag":"2917207851","pmid":"https://pubmed.ncbi.nlm.nih.gov/29790989"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gky379","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky379","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W537/25110642/gky379.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/46/W1/W537/25110642/gky379.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006951727","display_name":"Enis Afgan","orcid":"https://orcid.org/0000-0003-0922-6711"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Enis Afgan","raw_affiliation_strings":["Department of Biology, Johns Hopkins University, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Johns Hopkins University, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074340312","display_name":"Dannon Baker","orcid":"https://orcid.org/0000-0002-4882-5357"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dannon Baker","raw_affiliation_strings":["Department of Biology, Johns Hopkins University, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Johns Hopkins University, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015993889","display_name":"B\u00e9r\u00e9nice Batut","orcid":"https://orcid.org/0000-0001-9852-1987"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"B\u00e9r\u00e9nice Batut","raw_affiliation_strings":["Department of Computer Science, Albert-Ludwigs-University, Freiburg, Freiburg, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Albert-Ludwigs-University, Freiburg, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012506603","display_name":"Marius van den Beek","orcid":"https://orcid.org/0000-0002-9676-7032"},"institutions":[{"id":"https://openalex.org/I2746051580","display_name":"Universit\u00e9 Paris Sciences et Lettres","ror":"https://ror.org/013cjyk83","country_code":"FR","type":"education","lineage":["https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I80043","display_name":"Institut Curie","ror":"https://ror.org/04t0gwh46","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I80043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marius van\u00a0den\u00a0Beek","raw_affiliation_strings":["Institut Curie, PSL Research University, Paris, France"],"affiliations":[{"raw_affiliation_string":"Institut Curie, PSL Research University, Paris, France","institution_ids":["https://openalex.org/I2746051580","https://openalex.org/I80043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058980738","display_name":"Dave Bouvier","orcid":"https://orcid.org/0000-0001-8031-5069"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dave Bouvier","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Penn State University, University Park, PA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Penn State University, University Park, PA, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004909274","display_name":"Martin \u010cech","orcid":"https://orcid.org/0000-0002-9318-1781"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin \u010cech","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Penn State University, University Park, PA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Penn State University, University Park, PA, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051693563","display_name":"John Chilton","orcid":"https://orcid.org/0000-0002-6794-0756"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Chilton","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Penn State University, University Park, PA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Penn State University, University Park, PA, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019027500","display_name":"Dave Clements","orcid":"https://orcid.org/0000-0002-9970-6657"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dave Clements","raw_affiliation_strings":["Department of Biology, Johns Hopkins University, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Johns Hopkins University, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030446017","display_name":"Nate Coraor","orcid":null},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nate Coraor","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Penn State University, University Park, PA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Penn State University, University Park, PA, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006559585","display_name":"Bj\u00f6rn Gr\u00fcning","orcid":"https://orcid.org/0000-0002-3079-6586"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bj\u00f6rn A Gr\u00fcning","raw_affiliation_strings":["Center for Biological Systems Analysis (ZBSA), University of Freiburg, Freiburg, Germany","Department of Computer Science, Albert-Ludwigs-University, Freiburg, Freiburg, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Biological Systems Analysis (ZBSA), University of Freiburg, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]},{"raw_affiliation_string":"Department of Computer Science, Albert-Ludwigs-University, Freiburg, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032668613","display_name":"Aysam Guerler","orcid":"https://orcid.org/0000-0001-6513-2539"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aysam Guerler","raw_affiliation_strings":["Department of Biology, Johns Hopkins University, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Johns Hopkins University, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007050739","display_name":"Jennifer Hillman\u2010Jackson","orcid":"https://orcid.org/0000-0003-4012-8116"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer Hillman-Jackson","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Penn State University, University Park, PA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Penn State University, University Park, PA, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013915440","display_name":"Saskia Hiltemann","orcid":"https://orcid.org/0000-0003-3803-468X"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Saskia Hiltemann","raw_affiliation_strings":["Department of Pathology, Erasmus Medical Center, Rotterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, Erasmus Medical Center, Rotterdam, The Netherlands","institution_ids":["https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087600054","display_name":"Vahid Jalili","orcid":"https://orcid.org/0000-0003-4986-2157"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vahid Jalili","raw_affiliation_strings":["Department of Biomedical Engineering, Oregon Health and Science University, OR, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Oregon Health and Science University, OR, USA","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040233488","display_name":"Helena Rasche","orcid":null},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Helena Rasche","raw_affiliation_strings":["Department of Computer Science, Albert-Ludwigs-University, Freiburg, Freiburg, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Albert-Ludwigs-University, Freiburg, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034974535","display_name":"Nicola Soranzo","orcid":"https://orcid.org/0000-0003-3627-5340"},"institutions":[{"id":"https://openalex.org/I2799300731","display_name":"Norwich Research Park","ror":"https://ror.org/0062dz060","country_code":"GB","type":"archive","lineage":["https://openalex.org/I2799300731"]},{"id":"https://openalex.org/I4210100714","display_name":"Earlham Institute","ror":"https://ror.org/018cxtf62","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210100714"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicola Soranzo","raw_affiliation_strings":["Earlham Institute, Norwich Research Park, Norwich, UK"],"affiliations":[{"raw_affiliation_string":"Earlham Institute, Norwich Research Park, Norwich, UK","institution_ids":["https://openalex.org/I2799300731","https://openalex.org/I4210100714"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031069551","display_name":"Jeremy Goecks","orcid":"https://orcid.org/0000-0002-4583-5226"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeremy Goecks","raw_affiliation_strings":["Department of Biomedical Engineering, Oregon Health and Science University, OR, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Oregon Health and Science University, OR, USA","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025611053","display_name":"James Taylor","orcid":"https://orcid.org/0000-0001-5079-840X"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Taylor","raw_affiliation_strings":["Department of Biology, Johns Hopkins University, Baltimore, MD, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Johns Hopkins University, Baltimore, MD, USA","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065292926","display_name":"Anton Nekrutenko","orcid":"https://orcid.org/0000-0002-5987-8032"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anton Nekrutenko","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Penn State University, University Park, PA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Penn State University, University Park, PA, USA","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075101770","display_name":"Daniel Blankenberg","orcid":"https://orcid.org/0000-0002-6833-9049"},"institutions":[{"id":"https://openalex.org/I36373038","display_name":"Cleveland Clinic Lerner College of Medicine","ror":"https://ror.org/02x4b0932","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1316902750","https://openalex.org/I36373038"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Daniel Blankenberg","raw_affiliation_strings":["Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, USA"],"affiliations":[{"raw_affiliation_string":"Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, Cleveland, OH, USA","institution_ids":["https://openalex.org/I36373038"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":20,"corresponding_author_ids":["https://openalex.org/A5075101770"],"corresponding_institution_ids":["https://openalex.org/I36373038"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":960.0398,"has_fulltext":true,"cited_by_count":3867,"citation_normalized_percentile":{"value":0.99997138,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"46","issue":"W1","first_page":"W537","last_page":"W544"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/galaxy","display_name":"Galaxy","score":0.5802449584007263},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5132195949554443},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.46651092171669006},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4142979681491852},{"id":"https://openalex.org/keywords/astrophysics","display_name":"Astrophysics","score":0.3738374412059784},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3538650870323181},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3409367799758911},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.24634632468223572}],"concepts":[{"id":"https://openalex.org/C98444146","wikidata":"https://www.wikidata.org/wiki/Q318","display_name":"Galaxy","level":2,"score":0.5802449584007263},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5132195949554443},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.46651092171669006},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4142979681491852},{"id":"https://openalex.org/C44870925","wikidata":"https://www.wikidata.org/wiki/Q37547","display_name":"Astrophysics","level":1,"score":0.3738374412059784},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3538650870323181},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3409367799758911},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.24634632468223572},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007391","descriptor_name":"International Cooperation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007391","descriptor_name":"International Cooperation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007391","descriptor_name":"International Cooperation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D057054","descriptor_name":"Molecular Imaging","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D057054","descriptor_name":"Molecular Imaging","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D057054","descriptor_name":"Molecular Imaging","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gky379","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky379","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W537/25110642/gky379.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:29790989","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29790989","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pure.eur.nl:openaire/f80a9f5b-9d7b-407f-b849-ebe5e31ef6dc","is_oa":true,"landing_page_url":"https://pure.eur.nl/en/publications/f80a9f5b-9d7b-407f-b849-ebe5e31ef6dc","pdf_url":null,"source":{"id":"https://openalex.org/S4306401266","display_name":"EUR Research Repository (Erasmus University Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Afgan, E, Baker, D, Batut, B, van Beek, M, Bouvier, D, Cech, M, Chilton, J, Clements, D, Coraor, N, Gruning, BA, Guerler, A, Hillman-Jackson, J, Hiltemann, S, Jalili, V, Rasche, H, Soranzo, N, Goecks, J, Taylor, J, Nekrutenko, A & Blankenberg, D 2018, 'The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update', Nucleic Acids Research, vol. 46, no. W1, pp. W537-W544. https://doi.org/10.1093/nar/gky379","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:eur:oai:repub.eur.nl:114438","is_oa":true,"landing_page_url":"http://hdl.handle.net/1765/114438","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 46(W1), W537 - W544","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-04645092v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04645092","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2018, 46 (W1), pp.W537-W544. ⟨10.1093/nar/gky379⟩","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:4991189","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6030816","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:freidok.uni-freiburg.de:270864","is_oa":false,"landing_page_url":"https://freidok.uni-freiburg.de/data/270864","pdf_url":null,"source":{"id":"https://openalex.org/S4306401057","display_name":"FreiDok plus (Universit\u00e4tsbibliothek Freiburg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I161046081","host_organization_name":"University of Freiburg","host_organization_lineage":["https://openalex.org/I161046081"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic acids research. - 46, W1 (2018) , W537-W544, ISSN: 1362-4962","raw_type":"article"},{"id":"pmh:oai:repub.eur.nl:114438","is_oa":false,"landing_page_url":"http://repub.eur.nl/pub/114438","pdf_url":null,"source":{"id":"https://openalex.org/S4306400997","display_name":"RePub (Erasmus University, Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research vol. 46 no. W1, pp. W537-W544","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gky379","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky379","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W537/25110642/gky379.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1567103826","display_name":null,"funder_award_id":"HG004909","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2407172668","display_name":null,"funder_award_id":"DBI 0543285","funder_id":"https://openalex.org/F4320307381","funder_display_name":"National Sleep Foundation"},{"id":"https://openalex.org/G2940291979","display_name":null,"funder_award_id":"1661497","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3690376308","display_name":null,"funder_award_id":"BBS/E/T/000PR9814","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5135362768","display_name":null,"funder_award_id":"1661497","funder_id":"https://openalex.org/F4320307381","funder_display_name":"National Sleep Foundation"},{"id":"https://openalex.org/G6345853531","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6558407419","display_name":null,"funder_award_id":"0850103","funder_id":"https://openalex.org/F4320307381","funder_display_name":"National Sleep Foundation"},{"id":"https://openalex.org/G70576348","display_name":null,"funder_award_id":"BBS/OS/NW/000016","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7470937020","display_name":null,"funder_award_id":"HG004909","funder_id":"https://openalex.org/F4320308109","funder_display_name":"Pennsylvania Department of Health"},{"id":"https://openalex.org/G7672504477","display_name":"Tailoring Genomic Data to the Needs of Experimental Biologists and Educators","funder_award_id":"0543285","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7714384854","display_name":null,"funder_award_id":"HG005133","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7895748443","display_name":null,"funder_award_id":"HG006620","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7943371043","display_name":"Cyberinfrastructure for Accessible and Reproducible Research in Life Sciences","funder_award_id":"0850103","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8927429335","display_name":null,"funder_award_id":"HG005542","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320307381","display_name":"National Sleep Foundation","ror":"https://ror.org/00zc1hf95"},{"id":"https://openalex.org/F4320308109","display_name":"Pennsylvania Department of Health","ror":"https://ror.org/00ra1fg11"},{"id":"https://openalex.org/F4320309370","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10"},{"id":"https://openalex.org/F4320309680","display_name":"Cleveland Clinic","ror":"https://ror.org/03xjacd83"},{"id":"https://openalex.org/F4320310419","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320333182","display_name":"Huck Institutes of the Life Sciences","ror":null},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2917207851.pdf","grobid_xml":"https://content.openalex.org/works/W2917207851.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W1502797194","https://openalex.org/W1596936080","https://openalex.org/W1969739015","https://openalex.org/W1989703391","https://openalex.org/W2001818158","https://openalex.org/W2013434113","https://openalex.org/W2025660327","https://openalex.org/W2043701535","https://openalex.org/W2063495480","https://openalex.org/W2069152576","https://openalex.org/W2072970694","https://openalex.org/W2097464861","https://openalex.org/W2108718991","https://openalex.org/W2113534011","https://openalex.org/W2113565103","https://openalex.org/W2115646700","https://openalex.org/W2121015328","https://openalex.org/W2141040548","https://openalex.org/W2142678478","https://openalex.org/W2146545525","https://openalex.org/W2148317584","https://openalex.org/W2158789637","https://openalex.org/W2159675211","https://openalex.org/W2161645441","https://openalex.org/W2169456326","https://openalex.org/W2179438025","https://openalex.org/W2254034232","https://openalex.org/W2323326409","https://openalex.org/W2341539131","https://openalex.org/W2346143774","https://openalex.org/W2432815617","https://openalex.org/W2508061336","https://openalex.org/W2525496611","https://openalex.org/W2539403003","https://openalex.org/W2567309032","https://openalex.org/W2592811885","https://openalex.org/W2604622795","https://openalex.org/W2613409207","https://openalex.org/W2619713135","https://openalex.org/W2621270629","https://openalex.org/W2802842982","https://openalex.org/W2951322997","https://openalex.org/W6684084819","https://openalex.org/W6729352201","https://openalex.org/W6731558535"],"related_works":["https://openalex.org/W4282939103","https://openalex.org/W4283161366","https://openalex.org/W2021082401","https://openalex.org/W2113205597","https://openalex.org/W2012531322","https://openalex.org/W2402761219","https://openalex.org/W3105023009","https://openalex.org/W4394637313","https://openalex.org/W1968347830","https://openalex.org/W2790283293"],"abstract_inverted_index":{"Galaxy":[0,41,85,92,114,133,136,155,172,179,189],"(homepage:":[1],"https://galaxyproject.org,":[2],"main":[3,188],"public":[4,173],"server:":[5],"https://usegalaxy.org)":[6],"is":[7],"a":[8],"web-based":[9],"scientific":[10],"analysis":[11],"platform":[12],"used":[13,117],"by":[14],"tens":[15,120],"of":[16,18,49,121,123,151,171,186],"thousands":[17,122],"scientists":[19],"across":[20],"the":[21,80,84,88,132,178,187],"world":[22],"to":[23,43,56,68,97,115,142,161,166,177],"analyze":[24],"large":[25],"biomedical":[26,51],"datasets":[27],"such":[28],"as":[29],"those":[30],"found":[31],"in":[32,39],"genomics,":[33],"proteomics,":[34],"metabolomics":[35],"and":[36,64,77,87,104,108,125,157,163,181,184],"imaging.":[37],"Started":[38],"2005,":[40],"continues":[42],"focus":[44],"on":[45,148],"three":[46],"key":[47],"challenges":[48],"data-driven":[50],"science:":[52],"making":[53,65],"analyses":[54,60,70],"accessible":[55],"all":[57,192],"researchers,":[58],"ensuring":[59],"are":[61,128],"completely":[62],"reproducible,":[63],"it":[66],"simple":[67],"communicate":[69],"so":[71],"that":[72],"they":[73],"can":[74],"be":[75,116,164],"reused":[76],"extended.":[78],"During":[79],"last":[81],"two":[82],"years,":[83],"team":[86],"open-source":[89],"community":[90,137],"around":[91],"have":[93,191],"made":[94],"substantial":[95],"improvements":[96,111],"Galaxy's":[98,167],"core":[99],"framework,":[100],"user":[101,109,158],"interface,":[102],"tools,":[103,183],"training":[105],"materials.":[106],"Framework":[107],"interface":[110],"now":[112,129],"enable":[113],"for":[118],"analyzing":[119],"datasets,":[124],">5500":[126],"tools":[127],"available":[130],"from":[131],"ToolShed.":[134],"The":[135,154,169],"has":[138],"led":[139],"an":[140],"effort":[141],"create":[143],"numerous":[144],"high-quality":[145],"tutorials":[146],"focused":[147],"common":[149],"types":[150],"genomic":[152],"analyses.":[153],"developer":[156],"communities":[159],"continue":[160],"grow":[162],"integral":[165],"development.":[168],"number":[170],"servers,":[174],"developers":[175],"contributing":[176],"framework":[180],"its":[182],"users":[185],"server":[190],"increased":[193],"substantially.":[194]},"counts_by_year":[{"year":2026,"cited_by_count":54},{"year":2025,"cited_by_count":325},{"year":2024,"cited_by_count":469},{"year":2023,"cited_by_count":560},{"year":2022,"cited_by_count":725},{"year":2021,"cited_by_count":708},{"year":2020,"cited_by_count":602},{"year":2019,"cited_by_count":361},{"year":2018,"cited_by_count":58},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}