{"id":"https://openalex.org/W2802723872","doi":"https://doi.org/10.1093/nar/gky309","title":"MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update)","display_name":"MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update)","publication_year":2018,"publication_date":"2018-04-12","ids":{"openalex":"https://openalex.org/W2802723872","doi":"https://doi.org/10.1093/nar/gky309","mag":"2802723872","pmid":"https://pubmed.ncbi.nlm.nih.gov/29718451"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gky309","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky309","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W368/25110661/gky309.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/46/W1/W368/25110661/gky309.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028309308","display_name":"Luk\u00e1\u0161 Pravda","orcid":"https://orcid.org/0000-0002-6435-4719"},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Luk\u00e1\u0161 Pravda","raw_affiliation_strings":["CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kotl\u00e1\u0159sk\u00e1 2, 611 37 Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kotl\u00e1\u0159sk\u00e1 2, 611 37 Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058986691","display_name":"David Sehnal","orcid":"https://orcid.org/0000-0002-0682-3089"},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"David Sehnal","raw_affiliation_strings":["CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kotl\u00e1\u0159sk\u00e1 2, 611 37 Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kotl\u00e1\u0159sk\u00e1 2, 611 37 Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037819815","display_name":"Dominik Tou\u0161\u011bk","orcid":null},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]},{"id":"https://openalex.org/I4210120619","display_name":"Regional Centre of Advanced Technologies and Materials","ror":"https://ror.org/02mt5f456","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I4210120619"]},{"id":"https://openalex.org/I70703428","display_name":"Palack\u00fd University Olomouc","ror":"https://ror.org/04qxnmv42","country_code":"CZ","type":"education","lineage":["https://openalex.org/I70703428"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Dominik Tou\u0161ek","raw_affiliation_strings":["CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palack\u00fd University, t\u0159. 17. Listopadu 12, 771 46 Olomouc, Czech Republic"],"affiliations":[{"raw_affiliation_string":"CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]},{"raw_affiliation_string":"Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palack\u00fd University, t\u0159. 17. Listopadu 12, 771 46 Olomouc, Czech Republic","institution_ids":["https://openalex.org/I4210120619","https://openalex.org/I70703428"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046237771","display_name":"Veronika Navr\u00e1tilov\u00e1","orcid":"https://orcid.org/0000-0003-4556-8663"},"institutions":[{"id":"https://openalex.org/I4210120619","display_name":"Regional Centre of Advanced Technologies and Materials","ror":"https://ror.org/02mt5f456","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I4210120619"]},{"id":"https://openalex.org/I70703428","display_name":"Palack\u00fd University Olomouc","ror":"https://ror.org/04qxnmv42","country_code":"CZ","type":"education","lineage":["https://openalex.org/I70703428"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Veronika Navr\u00e1tilov\u00e1","raw_affiliation_strings":["Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palack\u00fd University, t\u0159. 17. Listopadu 12, 771 46 Olomouc, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palack\u00fd University, t\u0159. 17. Listopadu 12, 771 46 Olomouc, Czech Republic","institution_ids":["https://openalex.org/I4210120619","https://openalex.org/I70703428"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067386434","display_name":"V\u00e1clav Bazgier","orcid":"https://orcid.org/0000-0003-3393-3010"},"institutions":[{"id":"https://openalex.org/I4210120619","display_name":"Regional Centre of Advanced Technologies and Materials","ror":"https://ror.org/02mt5f456","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I4210120619"]},{"id":"https://openalex.org/I70703428","display_name":"Palack\u00fd University Olomouc","ror":"https://ror.org/04qxnmv42","country_code":"CZ","type":"education","lineage":["https://openalex.org/I70703428"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"V\u00e1clav Bazgier","raw_affiliation_strings":["Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palack\u00fd University, t\u0159. 17. Listopadu 12, 771 46 Olomouc, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palack\u00fd University, t\u0159. 17. Listopadu 12, 771 46 Olomouc, Czech Republic","institution_ids":["https://openalex.org/I4210120619","https://openalex.org/I70703428"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049457524","display_name":"Karel Berka","orcid":"https://orcid.org/0000-0001-9472-2589"},"institutions":[{"id":"https://openalex.org/I4210120619","display_name":"Regional Centre of Advanced Technologies and Materials","ror":"https://ror.org/02mt5f456","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I4210120619"]},{"id":"https://openalex.org/I70703428","display_name":"Palack\u00fd University Olomouc","ror":"https://ror.org/04qxnmv42","country_code":"CZ","type":"education","lineage":["https://openalex.org/I70703428"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Karel Berka","raw_affiliation_strings":["Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palack\u00fd University, t\u0159. 17. Listopadu 12, 771 46 Olomouc, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palack\u00fd University, t\u0159. 17. Listopadu 12, 771 46 Olomouc, Czech Republic","institution_ids":["https://openalex.org/I4210120619","https://openalex.org/I70703428"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051424845","display_name":"Radka Svobodov\u00e1 Va\u0159ekov\u00e1","orcid":"https://orcid.org/0000-0002-3840-8760"},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Radka Svobodov\u00e1\u00a0Va\u0159ekov\u00e1","raw_affiliation_strings":["CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kotl\u00e1\u0159sk\u00e1 2, 611 37 Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kotl\u00e1\u0159sk\u00e1 2, 611 37 Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061853775","display_name":"Jaroslav Ko\u010da","orcid":"https://orcid.org/0000-0002-2780-4901"},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jaroslav Ko\u010da","raw_affiliation_strings":["CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kotl\u00e1\u0159sk\u00e1 2, 611 37 Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"CEITEC \u2013 Central European Institute of Technology, Masaryk University Brno, Kamenice 5, 625 00 Brno, Czech Republic","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kotl\u00e1\u0159sk\u00e1 2, 611 37 Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041529029","display_name":"Michal Otyepka","orcid":"https://orcid.org/0000-0002-1066-5677"},"institutions":[{"id":"https://openalex.org/I4210120619","display_name":"Regional Centre of Advanced Technologies and Materials","ror":"https://ror.org/02mt5f456","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I4210120619"]},{"id":"https://openalex.org/I70703428","display_name":"Palack\u00fd University Olomouc","ror":"https://ror.org/04qxnmv42","country_code":"CZ","type":"education","lineage":["https://openalex.org/I70703428"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Michal Otyepka","raw_affiliation_strings":["Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palack\u00fd University, t\u0159. 17. Listopadu 12, 771 46 Olomouc, Czech Republic"],"affiliations":[{"raw_affiliation_string":"Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palack\u00fd University, t\u0159. 17. Listopadu 12, 771 46 Olomouc, Czech Republic","institution_ids":["https://openalex.org/I4210120619","https://openalex.org/I70703428"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5028309308"],"corresponding_institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":20.4507,"has_fulltext":false,"cited_by_count":377,"citation_normalized_percentile":{"value":0.99695408,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"46","issue":"W1","first_page":"W368","last_page":"W373"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13415","display_name":"Calcium signaling and nucleotide metabolism","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1314","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13415","display_name":"Calcium signaling and nucleotide metabolism","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1314","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11204","display_name":"Ion Channels and Receptors","score":0.973800003528595,"subfield":{"id":"https://openalex.org/subfields/2809","display_name":"Sensory Systems"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6222364902496338},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6020801067352295},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.5580325126647949},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.5537296533584595},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.42721328139305115},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4252765476703644},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.41272038221359253},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3520151376724243},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3326031565666199},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.24086859822273254}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6222364902496338},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6020801067352295},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.5580325126647949},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.5537296533584595},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.42721328139305115},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4252765476703644},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.41272038221359253},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3520151376724243},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3326031565666199},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.24086859822273254},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gky309","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky309","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W368/25110661/gky309.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:29718451","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29718451","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:4991211","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6030847","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gky309","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky309","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W368/25110661/gky309.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1255183346","display_name":null,"funder_award_id":"P208/12/G016","funder_id":"https://openalex.org/F4320321006","funder_display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky"},{"id":"https://openalex.org/G1436251603","display_name":null,"funder_award_id":"676559","funder_id":"https://openalex.org/F4320338338","funder_display_name":"H2020 Research Infrastructures"},{"id":"https://openalex.org/G3496015395","display_name":null,"funder_award_id":"LQ1601","funder_id":"https://openalex.org/F4320323870","funder_display_name":"Central European Institute of Technology"},{"id":"https://openalex.org/G8268014227","display_name":null,"funder_award_id":"NPUII LO1305","funder_id":"https://openalex.org/F4320312071","funder_display_name":"Ministry of Education, Libya"}],"funders":[{"id":"https://openalex.org/F4320312071","display_name":"Ministry of Education, Libya","ror":"https://ror.org/02w030k33"},{"id":"https://openalex.org/F4320321006","display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky","ror":"https://ror.org/01pv73b02"},{"id":"https://openalex.org/F4320323870","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986"},{"id":"https://openalex.org/F4320338338","display_name":"H2020 Research Infrastructures","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2802723872.pdf","grobid_xml":"https://content.openalex.org/works/W2802723872.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W255996521","https://openalex.org/W1145321347","https://openalex.org/W1518412358","https://openalex.org/W1630585365","https://openalex.org/W1964640688","https://openalex.org/W1988328074","https://openalex.org/W2026076714","https://openalex.org/W2039181331","https://openalex.org/W2043901383","https://openalex.org/W2057843068","https://openalex.org/W2065894452","https://openalex.org/W2069309953","https://openalex.org/W2095252530","https://openalex.org/W2104333254","https://openalex.org/W2110585845","https://openalex.org/W2127272780","https://openalex.org/W2140387095","https://openalex.org/W2140831051","https://openalex.org/W2149268836","https://openalex.org/W2154823626","https://openalex.org/W2170463736","https://openalex.org/W2171075097","https://openalex.org/W2296756275","https://openalex.org/W2580523008","https://openalex.org/W2582100926","https://openalex.org/W2604973964","https://openalex.org/W2738417757","https://openalex.org/W2743883608","https://openalex.org/W2753791808","https://openalex.org/W2757992828","https://openalex.org/W2761989433","https://openalex.org/W2767957539","https://openalex.org/W2769235105","https://openalex.org/W2771627141"],"related_works":["https://openalex.org/W24553703","https://openalex.org/W4211000692","https://openalex.org/W4212920271","https://openalex.org/W2612240612","https://openalex.org/W4211208250","https://openalex.org/W4211054902","https://openalex.org/W2170381940","https://openalex.org/W2472351724","https://openalex.org/W3145366215","https://openalex.org/W4233334497"],"abstract_inverted_index":{"MOLEonline":[0,23,125,152,167],"is":[1,55,103,169],"an":[2],"interactive,":[3],"web-based":[4],"application":[5,48,73,150,168],"for":[6,68,129,153],"the":[7,27,32,58,63,72,120,130,149,173],"detection":[8,131],"and":[9,14,39,78,98,119,132,158],"characterization":[10,134],"of":[11,22,26,52,60,90,122,135,151,156],"channels":[12,61],"(pores":[13],"tunnels)":[15],"within":[16],"biomacromolecular":[17,91],"structures.":[18],"The":[19,47,101,166],"updated":[20],"version":[21,29],"overcomes":[24],"limitations":[25],"previous":[28],"by":[30],"incorporating":[31],"recently":[33],"developed":[34],"LiteMol":[35],"Viewer":[36],"visualization":[37],"engine":[38],"providing":[40],"a":[41,87],"simple,":[42],"fully":[43],"interactive":[44],"user":[45],"experience.":[46],"enables":[49],"two":[50],"modes":[51],"calculation:":[53],"one":[54],"dedicated":[56],"to":[57,85,115],"analysis":[59,121],"while":[62],"other":[64,106],"was":[65],"specifically":[66],"designed":[67],"transmembrane":[69],"pores.":[70,165],"As":[71],"can":[74,82],"use":[75],"both":[76,117],"PDB":[77],"mmCIF":[79],"formats,":[80],"it":[81],"be":[83],"leveraged":[84],"analyze":[86],"wide":[88],"spectrum":[89],"structures,":[92],"e.g.":[93],"stemming":[94],"from":[95],"NMR,":[96],"X-ray":[97],"cryo-EM":[99],"techniques.":[100],"tool":[102],"interconnected":[104],"with":[105],"bioinformatics":[107],"tools":[108],"(e.g.,":[109],"PDBe,":[110],"CSA,":[111],"ChannelsDB,":[112],"OPM,":[113],"UniProt)":[114],"help":[116],"setup":[118],"acquired":[123],"results.":[124],"provides":[126],"unprecedented":[127],"analytics":[128],"structural":[133,154],"channels,":[136],"as":[137,139],"well":[138],"information":[140],"about":[141],"their":[142],"numerous":[143],"physicochemical":[144],"features.":[145],"Here":[146],"we":[147],"present":[148],"analyses":[155],"\u03b1-hemolysin":[157],"transient":[159],"receptor":[160],"potential":[161],"mucolipin":[162],"1":[163],"(TRMP1)":[164],"freely":[170],"available":[171],"via":[172],"Internet":[174],"at":[175],"https://mole.upol.cz.":[176]},"counts_by_year":[{"year":2026,"cited_by_count":20},{"year":2025,"cited_by_count":66},{"year":2024,"cited_by_count":81},{"year":2023,"cited_by_count":50},{"year":2022,"cited_by_count":47},{"year":2021,"cited_by_count":51},{"year":2020,"cited_by_count":39},{"year":2019,"cited_by_count":20},{"year":2018,"cited_by_count":3}],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2025-10-10T00:00:00"}
