{"id":"https://openalex.org/W2797952236","doi":"https://doi.org/10.1093/nar/gky276","title":"BRepertoire: a user-friendly web server for analysing antibody repertoire data","display_name":"BRepertoire: a user-friendly web server for analysing antibody repertoire data","publication_year":2018,"publication_date":"2018-04-12","ids":{"openalex":"https://openalex.org/W2797952236","doi":"https://doi.org/10.1093/nar/gky276","mag":"2797952236","pmid":"https://pubmed.ncbi.nlm.nih.gov/29668996"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gky276","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky276","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W264/25110180/gky276.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/46/W1/W264/25110180/gky276.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016955588","display_name":"Christian Margreitter","orcid":"https://orcid.org/0000-0002-5473-6318"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christian Margreitter","raw_affiliation_strings":["Randall Centre for Cell\u00a0& Molecular Biophysics, King\u2019s College London, New Hunt\u2019s House, Guy\u2019s Campus, London SE1 9RT, UK"],"raw_orcid":"https://orcid.org/0000-0002-5473-6318","affiliations":[{"raw_affiliation_string":"Randall Centre for Cell\u00a0& Molecular Biophysics, King\u2019s College London, New Hunt\u2019s House, Guy\u2019s Campus, London SE1 9RT, UK","institution_ids":["https://openalex.org/I183935753"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020743331","display_name":"Hui\u2010Chun Lu","orcid":"https://orcid.org/0000-0002-3075-4511"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Hui-Chun Lu","raw_affiliation_strings":["Cell and Developmental Biology, University College London, Gower Street, Bloomsbury, London WC1E 6BT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cell and Developmental Biology, University College London, Gower Street, Bloomsbury, London WC1E 6BT, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032314214","display_name":"Catherine Townsend","orcid":"https://orcid.org/0000-0002-5555-1411"},"institutions":[{"id":"https://openalex.org/I1298207432","display_name":"Guy's Hospital","ror":"https://ror.org/04r33pf22","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1298207432","https://openalex.org/I200166805","https://openalex.org/I4210111135"]},{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Catherine Townsend","raw_affiliation_strings":["Department of Immunobiology, King\u2019s College London, Guy\u2019s Hospital Great Maze Pond, London SE1 9RT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Immunobiology, King\u2019s College London, Guy\u2019s Hospital Great Maze Pond, London SE1 9RT, UK","institution_ids":["https://openalex.org/I1298207432","https://openalex.org/I183935753"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102009846","display_name":"Alexander Stewart","orcid":"https://orcid.org/0000-0002-4931-5340"},"institutions":[{"id":"https://openalex.org/I28290843","display_name":"University of Surrey","ror":"https://ror.org/00ks66431","country_code":"GB","type":"education","lineage":["https://openalex.org/I28290843"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alexander Stewart","raw_affiliation_strings":["Faculty of Health and Medical Sciences, University of Surrey, Guildford GU2 7XH, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Health and Medical Sciences, University of Surrey, Guildford GU2 7XH, UK","institution_ids":["https://openalex.org/I28290843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010470469","display_name":"Deborah K. Dunn\u2010Walters","orcid":"https://orcid.org/0000-0002-7172-3893"},"institutions":[{"id":"https://openalex.org/I28290843","display_name":"University of Surrey","ror":"https://ror.org/00ks66431","country_code":"GB","type":"education","lineage":["https://openalex.org/I28290843"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Deborah K Dunn-Walters","raw_affiliation_strings":["Faculty of Health and Medical Sciences, University of Surrey, Guildford GU2 7XH, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Health and Medical Sciences, University of Surrey, Guildford GU2 7XH, UK","institution_ids":["https://openalex.org/I28290843"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049119135","display_name":"Franca Fraternali","orcid":"https://orcid.org/0000-0002-3143-6574"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Franca Fraternali","raw_affiliation_strings":["Randall Centre for Cell\u00a0& Molecular Biophysics, King\u2019s College London, New Hunt\u2019s House, Guy\u2019s Campus, London SE1 9RT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Randall Centre for Cell\u00a0& Molecular Biophysics, King\u2019s College London, New Hunt\u2019s House, Guy\u2019s Campus, London SE1 9RT, UK","institution_ids":["https://openalex.org/I183935753"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5049119135"],"corresponding_institution_ids":["https://openalex.org/I183935753"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.0351,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.92053966,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"46","issue":"W1","first_page":"W264","last_page":"W270"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11020","display_name":"Immune Cell Function and Interaction","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/repertoire","display_name":"Repertoire","score":0.7795928716659546},{"id":"https://openalex.org/keywords/antibody-repertoire","display_name":"Antibody Repertoire","score":0.6475755572319031},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6433264017105103},{"id":"https://openalex.org/keywords/table","display_name":"Table (database)","score":0.5944158434867859},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5775965452194214},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5357382297515869},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5222509503364563},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.49314993619918823},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.4368015229701996},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.43278828263282776},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3739486336708069},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36312973499298096},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.35292473435401917},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2791682183742523},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.21202385425567627},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17856347560882568},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11783713102340698},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1089719831943512}],"concepts":[{"id":"https://openalex.org/C2778473898","wikidata":"https://www.wikidata.org/wiki/Q2145110","display_name":"Repertoire","level":2,"score":0.7795928716659546},{"id":"https://openalex.org/C2910693471","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody Repertoire","level":3,"score":0.6475755572319031},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6433264017105103},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.5944158434867859},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5775965452194214},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5357382297515869},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5222509503364563},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.49314993619918823},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4368015229701996},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.43278828263282776},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3739486336708069},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36312973499298096},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.35292473435401917},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2791682183742523},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.21202385425567627},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17856347560882568},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11783713102340698},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1089719831943512},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gky276","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky276","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W264/25110180/gky276.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:29668996","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29668996","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:epubs.surrey.ac.uk:846218","is_oa":false,"landing_page_url":"http://epubs.surrey.ac.uk/846218/1/BRepertoire.pdf","pdf_url":"http://epubs.surrey.ac.uk/846218/1/BRepertoire.pdf","source":{"id":"https://openalex.org/S4306400680","display_name":"Surrey Research Insight Open Access (The University of Surrey)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28290843","host_organization_name":"University of Surrey","host_organization_lineage":["https://openalex.org/I28290843"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:kclpure.kcl.ac.uk:publications/cf587e07-81df-4fb2-8543-74cbd3e6dbc2","is_oa":true,"landing_page_url":"https://kclpure.kcl.ac.uk/portal/en/publications/cf587e07-81df-4fb2-8543-74cbd3e6dbc2","pdf_url":"https://kclpure.kcl.ac.uk/ws/files/110836421/BRepertoire_a_user_friendly_MARGREITTER_Published_2018_GOLD_VoR_CC_BY_NC_.pdf","source":{"id":"https://openalex.org/S4306400216","display_name":"Research Portal (King's College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I183935753","host_organization_name":"King's College London","host_organization_lineage":["https://openalex.org/I183935753"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Margreitter, C, Lu, H-C, Townsend, C L, Stewart, A, Dunn-Walters, D K & Fraternali, F 2018, 'BRepertoire: a user-friendly web server for analysing antibody repertoire data.', Nucleic Acids Research. https://doi.org/10.1093/nar/gky276","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:4991326","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6031031","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gky276","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky276","pdf_url":"https://academic.oup.com/nar/article-pdf/46/W1/W264/25110180/gky276.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6399999856948853,"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G1439270913","display_name":null,"funder_award_id":"MR/L01257X/2","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G1615230300","display_name":"Multi-scale analysis of B cell responses in ageing","funder_award_id":"MR/L01257X/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G2429263777","display_name":null,"funder_award_id":"MR/L01257X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G779913335","display_name":null,"funder_award_id":"MR/L01257X/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2797952236.pdf","grobid_xml":"https://content.openalex.org/works/W2797952236.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W135571511","https://openalex.org/W1506890399","https://openalex.org/W1587026990","https://openalex.org/W1647671624","https://openalex.org/W1750023785","https://openalex.org/W1863266496","https://openalex.org/W1890359263","https://openalex.org/W1965555277","https://openalex.org/W1975304761","https://openalex.org/W1978813754","https://openalex.org/W1980073965","https://openalex.org/W1996423252","https://openalex.org/W1997868832","https://openalex.org/W2021945571","https://openalex.org/W2029525307","https://openalex.org/W2057021995","https://openalex.org/W2060161303","https://openalex.org/W2089041106","https://openalex.org/W2111929429","https://openalex.org/W2113392525","https://openalex.org/W2125604001","https://openalex.org/W2146577751","https://openalex.org/W2148495628","https://openalex.org/W2157787848","https://openalex.org/W2185265351","https://openalex.org/W2342204193","https://openalex.org/W2430956829","https://openalex.org/W2508744904","https://openalex.org/W2520558865","https://openalex.org/W2530748177","https://openalex.org/W2556824914","https://openalex.org/W2559203725","https://openalex.org/W2577359160","https://openalex.org/W2611200784","https://openalex.org/W2613686816","https://openalex.org/W2754428040","https://openalex.org/W2789857505","https://openalex.org/W2793422535","https://openalex.org/W2799472446","https://openalex.org/W2950940950","https://openalex.org/W2951267902","https://openalex.org/W3132760874","https://openalex.org/W4230096730","https://openalex.org/W6636915900","https://openalex.org/W6639093311","https://openalex.org/W6665539036"],"related_works":["https://openalex.org/W2581256546","https://openalex.org/W2053091829","https://openalex.org/W4323236833","https://openalex.org/W2780245662","https://openalex.org/W179764517","https://openalex.org/W2616207459","https://openalex.org/W3008570337","https://openalex.org/W1933308802","https://openalex.org/W2792438874","https://openalex.org/W2055685841"],"abstract_inverted_index":{"Antibody":[0],"repertoire":[1,25,58],"analysis":[2,184],"by":[3,68,114,123],"high":[4],"throughput":[5],"sequencing":[6],"is":[7,15,62,195],"now":[8],"widely":[9],"used,":[10],"but":[11],"a":[12,46,115,124,155,180],"persisting":[13],"challenge":[14],"enabling":[16],"immunologists":[17],"to":[18,22,64,84,153],"explore":[19],"their":[20,28],"data":[21,66,134],"discover":[23],"discriminating":[24],"features":[26],"for":[27,36,53,89,148],"own":[29],"particular":[30],"investigations.":[31],"Computational":[32],"methods":[33],"are":[34,109,121],"necessary":[35],"large-scale":[37,54],"evaluation":[38],"of":[39,48,57,99,105,117,163,185],"antibody":[40],"properties.":[41],"We":[42,150],"have":[43],"developed":[44],"BRepertoire,":[45],"suite":[47],"user-friendly":[49],"web-based":[50],"software":[51,61],"tools":[52],"statistical":[55,72],"analyses":[56,75,108],"data.":[59],"The":[60,128,193],"able":[63],"use":[65,173],"preprocessed":[67],"IMGT,":[69],"and":[70,73,103,120,139,183,190],"performs":[71],"comparative":[74],"with":[76],"versatile":[77,156],"plotting":[78],"options.":[79],"BRepertoire":[80,152],"has":[81],"been":[82],"designed":[83],"operate":[85],"in":[86,135,179,188],"various":[87],"modes,":[88],"example":[90],"analysing":[91],"sequence-specific":[92],"V(D)J":[93],"gene":[94,177],"usage,":[95],"discerning":[96],"physico-chemical":[97],"properties":[98,187],"the":[100,112,132,141,168],"CDR":[101],"regions":[102],"clustering":[104],"clonotypes.":[106],"Those":[107],"performed":[110],"on":[111],"fly":[113],"number":[116],"R":[118],"packages":[119],"deployed":[122],"shiny":[125],"web":[126],"platform.":[127],"user":[129],"can":[130],"download":[131],"analysed":[133],"different":[136],"table":[137],"formats":[138],"save":[140],"generated":[142],"plots":[143],"as":[144],"image":[145],"files":[146],"ready":[147],"publication.":[149],"believe":[151],"be":[154],"analytical":[157],"tool":[158],"that":[159],"complements":[160],"experimental":[161],"studies":[162],"immune":[164],"repertoires.":[165],"To":[166],"illustrate":[167],"server's":[169],"functionality,":[170],"we":[171],"show":[172],"cases":[174],"including":[175],"differential":[176],"usage":[178],"vaccination":[181],"dataset":[182],"CDR3H":[186],"old":[189],"young":[191],"individuals.":[192],"server":[194],"accessible":[196],"under":[197],"http://mabra.biomed.kcl.ac.uk/BRepertoire.":[198]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":2}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
