{"id":"https://openalex.org/W2900701906","doi":"https://doi.org/10.1093/nar/gky1130","title":"The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver","display_name":"The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver","publication_year":2018,"publication_date":"2018-10-25","ids":{"openalex":"https://openalex.org/W2900701906","doi":"https://doi.org/10.1093/nar/gky1130","mag":"2900701906","pmid":"https://pubmed.ncbi.nlm.nih.gov/30445555"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gky1130","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky1130","pdf_url":"https://academic.oup.com/nar/article-pdf/47/D1/D490/27437286/gky1130.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/47/D1/D490/27437286/gky1130.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031310983","display_name":"Arun Prasad Pandurangan","orcid":"https://orcid.org/0000-0001-7168-7143"},"institutions":[{"id":"https://openalex.org/I170203145","display_name":"MRC Laboratory of Molecular Biology","ror":"https://ror.org/00tw3jy02","country_code":"GB","type":"facility","lineage":["https://openalex.org/I170203145","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Arun Prasad Pandurangan","raw_affiliation_strings":["MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, UK"],"raw_orcid":"https://orcid.org/0000-0001-7168-7143","affiliations":[{"raw_affiliation_string":"MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, UK","institution_ids":["https://openalex.org/I170203145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062133879","display_name":"Jonathan Stahlhacke","orcid":null},"institutions":[{"id":"https://openalex.org/I36234482","display_name":"University of Bristol","ror":"https://ror.org/0524sp257","country_code":"GB","type":"education","lineage":["https://openalex.org/I36234482"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jonathan Stahlhacke","raw_affiliation_strings":["Computer Science, University of Bristol, Bristol BS8 1UB, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science, University of Bristol, Bristol BS8 1UB, UK","institution_ids":["https://openalex.org/I36234482"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076884487","display_name":"Matt E. Oates","orcid":"https://orcid.org/0000-0002-0001-3675"},"institutions":[{"id":"https://openalex.org/I36234482","display_name":"University of Bristol","ror":"https://ror.org/0524sp257","country_code":"GB","type":"education","lineage":["https://openalex.org/I36234482"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Matt E Oates","raw_affiliation_strings":["Computer Science, University of Bristol, Bristol BS8 1UB, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science, University of Bristol, Bristol BS8 1UB, UK","institution_ids":["https://openalex.org/I36234482"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018880619","display_name":"Ben Smithers","orcid":"https://orcid.org/0000-0001-9508-8065"},"institutions":[{"id":"https://openalex.org/I36234482","display_name":"University of Bristol","ror":"https://ror.org/0524sp257","country_code":"GB","type":"education","lineage":["https://openalex.org/I36234482"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ben Smithers","raw_affiliation_strings":["Computer Science, University of Bristol, Bristol BS8 1UB, UK"],"raw_orcid":"https://orcid.org/0000-0001-9508-8065","affiliations":[{"raw_affiliation_string":"Computer Science, University of Bristol, Bristol BS8 1UB, UK","institution_ids":["https://openalex.org/I36234482"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064008781","display_name":"Julian Gough","orcid":"https://orcid.org/0000-0002-1965-4982"},"institutions":[{"id":"https://openalex.org/I170203145","display_name":"MRC Laboratory of Molecular Biology","ror":"https://ror.org/00tw3jy02","country_code":"GB","type":"facility","lineage":["https://openalex.org/I170203145","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Julian Gough","raw_affiliation_strings":["MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, UK","institution_ids":["https://openalex.org/I170203145"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5031310983"],"corresponding_institution_ids":["https://openalex.org/I170203145"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":6.4959,"has_fulltext":true,"cited_by_count":239,"citation_normalized_percentile":{"value":0.9766488,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"47","issue":"D1","first_page":"D490","last_page":"D494"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.9571232795715332},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.738267719745636},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6305749416351318},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5767298340797424},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5395869612693787},{"id":"https://openalex.org/keywords/superfamily","display_name":"SUPERFAMILY","score":0.5296948552131653},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.45326539874076843},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.45316755771636963},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.42051732540130615},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.41099196672439575},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.39133599400520325},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37220633029937744},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3267892599105835},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3214211165904999},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.25397247076034546},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.15208080410957336},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.15168705582618713},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14307120442390442}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.9571232795715332},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.738267719745636},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6305749416351318},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5767298340797424},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5395869612693787},{"id":"https://openalex.org/C92028520","wikidata":"https://www.wikidata.org/wiki/Q7395025","display_name":"SUPERFAMILY","level":3,"score":0.5296948552131653},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.45326539874076843},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.45316755771636963},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.42051732540130615},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.41099196672439575},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.39133599400520325},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37220633029937744},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3267892599105835},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3214211165904999},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.25397247076034546},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.15208080410957336},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.15168705582618713},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14307120442390442}],"mesh":[{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gky1130","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky1130","pdf_url":"https://academic.oup.com/nar/article-pdf/47/D1/D490/27437286/gky1130.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:30445555","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30445555","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:research-information.bris.ac.uk:openaire/870393f7-1c99-4273-9c16-ffd1b8c67d72","is_oa":true,"landing_page_url":"https://research-information.bris.ac.uk/en/publications/870393f7-1c99-4273-9c16-ffd1b8c67d72","pdf_url":null,"source":{"id":"https://openalex.org/S4306400895","display_name":"Bristol Research (University of Bristol)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I36234482","host_organization_name":"University of Bristol","host_organization_lineage":["https://openalex.org/I36234482"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Pandurangan, A P, Stahlhacke, J, Oates, M E, Smithers, B & Gough, J 2019, 'The SUPERFAMILY 2.0 database : a significant proteome update and a new webserver', Nucleic Acids Research, vol. 47, no. D1, pp. D490-D494. https://doi.org/10.1093/nar/gky1130","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:research-information.bris.ac.uk:publications/870393f7-1c99-4273-9c16-ffd1b8c67d72","is_oa":true,"landing_page_url":"https://hdl.handle.net/1983/870393f7-1c99-4273-9c16-ffd1b8c67d72","pdf_url":"https://research-information.bris.ac.uk/en/publications/870393f7-1c99-4273-9c16-ffd1b8c67d72","source":{"id":"https://openalex.org/S4306400895","display_name":"Bristol Research (University of Bristol)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I36234482","host_organization_name":"University of Bristol","host_organization_lineage":["https://openalex.org/I36234482"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:www.repository.cam.ac.uk:1810/354207","is_oa":true,"landing_page_url":"https://www.repository.cam.ac.uk/handle/1810/354207","pdf_url":"https://www.repository.cam.ac.uk/bitstreams/124bbcce-1f63-410f-9e70-c743f8a0a9ca/download","source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:europepmc.org:5302005","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6324026","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6324026","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6324026","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"doi:10.25504/fairsharing.frryvx","is_oa":true,"landing_page_url":"https://doi.org/10.25504/fairsharing.frryvx","pdf_url":null,"source":{"id":"https://openalex.org/S7407053452","display_name":"FAIRsharing.org","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1093/nar/gky1130","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky1130","pdf_url":"https://academic.oup.com/nar/article-pdf/47/D1/D490/27437286/gky1130.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3579931265","display_name":null,"funder_award_id":"BB/N019431/2","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5395998029","display_name":"SUPERFAMILY","funder_award_id":"BB/N019431/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7991709496","display_name":"SUPERFAMILY","funder_award_id":"BB/N019431/2","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8201163633","display_name":null,"funder_award_id":"BB/N019431/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320316170","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2900701906.pdf"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1965471939","https://openalex.org/W1965827393","https://openalex.org/W2055043387","https://openalex.org/W2085277871","https://openalex.org/W2090146405","https://openalex.org/W2099946731","https://openalex.org/W2100301244","https://openalex.org/W2102856132","https://openalex.org/W2122687161","https://openalex.org/W2125531604","https://openalex.org/W2130479394","https://openalex.org/W2133657429","https://openalex.org/W2133793243","https://openalex.org/W2138122982","https://openalex.org/W2140244239","https://openalex.org/W2148829626","https://openalex.org/W2149138213","https://openalex.org/W2151946481","https://openalex.org/W2154139219","https://openalex.org/W2161072217","https://openalex.org/W2170563234","https://openalex.org/W2173732482","https://openalex.org/W2558272290","https://openalex.org/W2900701906","https://openalex.org/W4210702584","https://openalex.org/W4233120011","https://openalex.org/W4236236547","https://openalex.org/W6631828510","https://openalex.org/W6641478244","https://openalex.org/W6641504017","https://openalex.org/W6664387049","https://openalex.org/W6671943491","https://openalex.org/W6672781883","https://openalex.org/W6675012796","https://openalex.org/W6675160406","https://openalex.org/W6675253976","https://openalex.org/W6678389819","https://openalex.org/W6678544080","https://openalex.org/W6679995702","https://openalex.org/W6680051572","https://openalex.org/W6680541370","https://openalex.org/W6680731567","https://openalex.org/W6681876502","https://openalex.org/W6682062120","https://openalex.org/W6683932083","https://openalex.org/W6685036246","https://openalex.org/W6729889892"],"related_works":["https://openalex.org/W2557595285","https://openalex.org/W2161189461","https://openalex.org/W2022667872","https://openalex.org/W4213149192","https://openalex.org/W2161062388","https://openalex.org/W2003144438","https://openalex.org/W2762751282","https://openalex.org/W1982597966","https://openalex.org/W2006673229","https://openalex.org/W1972394537"],"abstract_inverted_index":{"Here,":[0],"we":[1,125],"present":[2],"a":[3,25,127],"major":[4],"update":[5,101],"to":[6,115],"the":[7,11,15,45,52,77,103,108,116,119,134,139,148,155],"SUPERFAMILY":[8,19,111,129],"database":[9,32,78],"and":[10,51,64,73,84,92,99,142,151],"webserver.":[12],"We":[13],"describe":[14],"addition":[16,60],"of":[17,27,40,110,122,144],"new":[18,128],"2.0":[20,130],"profile":[21],"HMM":[22],"library":[23],"containing":[24],"total":[26],"27":[28],"623":[29],"HMMs.":[30],"The":[31,95],"now":[33],"includes":[34],"Superfamily":[35,145],"domain":[36],"annotations":[37,80],"for":[38,55,81,147],"millions":[39],"protein":[41,68],"sequences":[42,69],"taken":[43,89],"from":[44,71,90],"Universal":[46],"Protein":[47],"Recourse":[48],"Knowledgebase":[49],"(UniProtKB)":[50],"National":[53],"Center":[54],"Biotechnology":[56],"Information":[57],"(NCBI).":[58],"This":[59],"constitutes":[61],"about":[62],"51":[63],"45":[65],"million":[66],"distinct":[67],"obtained":[70],"UniProtKB":[72,91],"NCBI":[74,93],"respectively.":[75,94],"Currently,":[76,133],"contains":[79],"63":[82],"244":[83],"102":[85],"151":[86],"complete":[87],"genomes":[88],"current":[96],"sequence":[97,150],"collection":[98,153],"genome":[100,152],"is":[102],"biggest":[104],"so":[105],"far":[106],"in":[107,154],"history":[109],"updates.":[112],"In":[113],"order":[114],"deal":[117],"with":[118],"massive":[120],"wealth":[121],"information,":[123],"here":[124],"introduce":[126],"webserver":[131,135],"(http://supfam.org).":[132],"mainly":[136],"focuses":[137],"on":[138],"search,":[140],"retrieval":[141],"display":[143],"annotation":[146],"entire":[149],"database.":[156]},"counts_by_year":[{"year":2026,"cited_by_count":22},{"year":2025,"cited_by_count":47},{"year":2024,"cited_by_count":34},{"year":2023,"cited_by_count":26},{"year":2022,"cited_by_count":38},{"year":2021,"cited_by_count":31},{"year":2020,"cited_by_count":28},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":2}],"updated_date":"2026-07-14T08:27:34.040176","created_date":"2018-11-29T00:00:00"}
