{"id":"https://openalex.org/W2899971546","doi":"https://doi.org/10.1093/nar/gky1099","title":"Update of the FANTOM web resource: expansion to provide additional transcriptome atlases","display_name":"Update of the FANTOM web resource: expansion to provide additional transcriptome atlases","publication_year":2018,"publication_date":"2018-10-20","ids":{"openalex":"https://openalex.org/W2899971546","doi":"https://doi.org/10.1093/nar/gky1099","mag":"2899971546","pmid":"https://pubmed.ncbi.nlm.nih.gov/30407557"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gky1099","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky1099","pdf_url":"https://academic.oup.com/nar/article-pdf/47/D1/D752/27437410/gky1099.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/47/D1/D752/27437410/gky1099.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038594088","display_name":"Marina Lizio","orcid":"https://orcid.org/0000-0001-7337-7325"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Marina Lizio","raw_affiliation_strings":["RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047548196","display_name":"Imad Abugessaisa","orcid":"https://orcid.org/0000-0001-7458-801X"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Imad Abugessaisa","raw_affiliation_strings":["RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032246912","display_name":"Shuhei Noguchi","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shuhei Noguchi","raw_affiliation_strings":["RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007556413","display_name":"Atsushi Kondo","orcid":"https://orcid.org/0000-0002-1175-7485"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Atsushi Kondo","raw_affiliation_strings":["RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103097348","display_name":"Akira Hasegawa","orcid":"https://orcid.org/0000-0002-7674-6955"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Akira Hasegawa","raw_affiliation_strings":["RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019767879","display_name":"Chung-Chau Hon","orcid":"https://orcid.org/0000-0002-3741-7577"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Chung Chau Hon","raw_affiliation_strings":["RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037842288","display_name":"Michiel de Hoon","orcid":"https://orcid.org/0000-0003-0489-2352"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Michiel de\u00a0Hoon","raw_affiliation_strings":["RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110681327","display_name":"Jessica Severin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Jessica Severin","raw_affiliation_strings":["RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044080699","display_name":"Shinya Oki","orcid":"https://orcid.org/0000-0002-4767-3259"},"institutions":[{"id":"https://openalex.org/I135598925","display_name":"Kyushu University","ror":"https://ror.org/00p4k0j84","country_code":"JP","type":"education","lineage":["https://openalex.org/I135598925"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shinya Oki","raw_affiliation_strings":["Department of Developmental Biology, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan"],"raw_orcid":"https://orcid.org/0000-0002-4767-3259","affiliations":[{"raw_affiliation_string":"Department of Developmental Biology, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan","institution_ids":["https://openalex.org/I135598925"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032097008","display_name":"Yoshihide Hayashizaki","orcid":"https://orcid.org/0000-0002-0561-2802"},"institutions":[{"id":"https://openalex.org/I4210110652","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yoshihide Hayashizaki","raw_affiliation_strings":["RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198 Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198 Japan","institution_ids":["https://openalex.org/I4210110652"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072131150","display_name":"Piero Carninci","orcid":"https://orcid.org/0000-0001-7202-7243"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Piero Carninci","raw_affiliation_strings":["RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066531799","display_name":"Takeya Kasukawa","orcid":"https://orcid.org/0000-0001-5085-0802"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Takeya Kasukawa","raw_affiliation_strings":["RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":"https://orcid.org/0000-0001-5085-0802","affiliations":[{"raw_affiliation_string":"RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051284054","display_name":"Hideya Kawaji","orcid":"https://orcid.org/0000-0002-0575-0308"},"institutions":[{"id":"https://openalex.org/I4210110652","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652"]},{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Hideya Kawaji","raw_affiliation_strings":["RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan","RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198 Japan"],"raw_orcid":"https://orcid.org/0000-0002-0575-0308","affiliations":[{"raw_affiliation_string":"RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210150921"]},{"raw_affiliation_string":"RIKEN Preventive Medicine and Diagnosis Innovation Program, Wako, Saitama 351-0198 Japan","institution_ids":["https://openalex.org/I4210110652"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5051284054","https://openalex.org/A5066531799"],"corresponding_institution_ids":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":10.5656,"has_fulltext":false,"cited_by_count":307,"citation_normalized_percentile":{"value":0.99230404,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"47","issue":"D1","first_page":"D752","last_page":"D758"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.7779529094696045},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7486788630485535},{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.6670671701431274},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6541035175323486},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6229316592216492},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.49794721603393555},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.4579140245914459},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4514240622520447},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4285631477832794},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.37816840410232544},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3586684465408325},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.2783719301223755},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.25974589586257935}],"concepts":[{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.7779529094696045},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7486788630485535},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.6670671701431274},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6541035175323486},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6229316592216492},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.49794721603393555},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.4579140245914459},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4514240622520447},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4285631477832794},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.37816840410232544},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3586684465408325},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.2783719301223755},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.25974589586257935}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004285","descriptor_name":"Dogs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011401","descriptor_name":"Promoter Regions, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gky1099","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky1099","pdf_url":"https://academic.oup.com/nar/article-pdf/47/D1/D752/27437410/gky1099.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:30407557","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30407557","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:5301939","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6323950","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6323950","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6323950","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gky1099","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky1099","pdf_url":"https://academic.oup.com/nar/article-pdf/47/D1/D752/27437410/gky1099.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4844535694","display_name":null,"funder_award_id":"16H02902","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G492856617","display_name":null,"funder_award_id":"16K12529","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2899971546.pdf","grobid_xml":"https://content.openalex.org/works/W2899971546.grobid-xml"},"referenced_works_count":72,"referenced_works":["https://openalex.org/W1533942137","https://openalex.org/W1898862743","https://openalex.org/W1903485451","https://openalex.org/W1978901723","https://openalex.org/W1986223165","https://openalex.org/W1986234964","https://openalex.org/W2007771322","https://openalex.org/W2015845481","https://openalex.org/W2029919331","https://openalex.org/W2041281952","https://openalex.org/W2057692691","https://openalex.org/W2061747833","https://openalex.org/W2092138236","https://openalex.org/W2094468530","https://openalex.org/W2096465161","https://openalex.org/W2099468911","https://openalex.org/W2102920878","https://openalex.org/W2108797218","https://openalex.org/W2126958666","https://openalex.org/W2130305733","https://openalex.org/W2160333540","https://openalex.org/W2166810745","https://openalex.org/W2176686025","https://openalex.org/W2460139914","https://openalex.org/W2545233410","https://openalex.org/W2593488635","https://openalex.org/W2619408564","https://openalex.org/W2748577514","https://openalex.org/W2750304043","https://openalex.org/W2751108115","https://openalex.org/W2752105574","https://openalex.org/W2765677725","https://openalex.org/W2766195206","https://openalex.org/W2770926404","https://openalex.org/W2803944601","https://openalex.org/W2807138843","https://openalex.org/W2900310474","https://openalex.org/W2950949680","https://openalex.org/W2953143431","https://openalex.org/W6639410271","https://openalex.org/W6646671005","https://openalex.org/W6646999165","https://openalex.org/W6654361372","https://openalex.org/W6657967229","https://openalex.org/W6660643207","https://openalex.org/W6664948953","https://openalex.org/W6666063392","https://openalex.org/W6673340507","https://openalex.org/W6674213138","https://openalex.org/W6674364653","https://openalex.org/W6675187192","https://openalex.org/W6675294520","https://openalex.org/W6676115497","https://openalex.org/W6679007198","https://openalex.org/W6679426312","https://openalex.org/W6683873763","https://openalex.org/W6684438377","https://openalex.org/W6686021233","https://openalex.org/W6718570649","https://openalex.org/W6729287218","https://openalex.org/W6734983521","https://openalex.org/W6738244038","https://openalex.org/W6743660800","https://openalex.org/W6743665679","https://openalex.org/W6743908801","https://openalex.org/W6745458573","https://openalex.org/W6745606890","https://openalex.org/W6746626232","https://openalex.org/W6751674185","https://openalex.org/W6751938931","https://openalex.org/W7056485163","https://openalex.org/W7075682736"],"related_works":["https://openalex.org/W2113330652","https://openalex.org/W2061914098","https://openalex.org/W3156071777","https://openalex.org/W4283214369","https://openalex.org/W4296940635","https://openalex.org/W3208446472","https://openalex.org/W2791084809","https://openalex.org/W4281254649","https://openalex.org/W2914108095","https://openalex.org/W2951939896"],"abstract_inverted_index":{"The":[0,141],"FANTOM":[1,17,173],"web":[2,174],"resource":[3,82],"(http://fantom.gsc.riken.jp/)":[4],"was":[5],"developed":[6],"to":[7,11,76,99,103,126,151],"provide":[8,100],"easy":[9],"access":[10],"the":[12,16,21,34,41,81,105,123,156,163,172],"data":[13,143,168],"produced":[14],"by":[15,48,83],"project.":[18],"It":[19],"contains":[20],"most":[22],"complete":[23],"and":[24,31,36,58,65,74,92,116,131,147,169],"comprehensive":[25],"sets":[26],"of":[27,44,52,72,111,138,166],"actively":[28],"transcribed":[29],"enhancers":[30],"promoters":[32],"in":[33,62,171],"human":[35,146],"mouse":[37,148],"genomes.":[38],"We":[39,78,119],"determined":[40],"transcription":[42],"activities":[43],"these":[45],"regulatory":[46],"elements":[47],"CAGE":[49,97,124,142],"(Cap":[50],"Analysis":[51],"Gene":[53],"Expression)":[54],"for":[55,96,134],"both":[56,167],"steady":[57],"dynamic":[59],"cellular":[60],"states":[61],"all":[63],"major":[64],"some":[66],"rare":[67],"cell":[68,139],"types,":[69],"consecutive":[70],"stages":[71],"differentiation":[73],"responses":[75],"stimuli.":[77],"have":[79,120],"expanded":[80,122],"employing":[84],"different":[85],"assays,":[86],"such":[87],"as":[88],"RNA-seq,":[89],"short":[90],"RNA-seq":[91],"a":[93,135],"paired-end":[94],"protocol":[95],"(CAGEscan),":[98],"new":[101],"angles":[102],"study":[104],"transcriptome.":[106],"That":[107],"yielded":[108],"additional":[109],"atlases":[110],"long":[112],"noncoding":[113],"RNAs,":[114],"miRNAs":[115],"their":[117],"promoters.":[118],"also":[121],"analysis":[125],"cover":[127],"rat,":[128],"dog,":[129],"chicken,":[130],"macaque":[132],"species":[133],"limited":[136],"number":[137],"types.":[140],"obtained":[144],"from":[145],"were":[149],"reprocessed":[150],"make":[152],"them":[153],"available":[154],"on":[155],"latest":[157],"genome":[158],"assemblies.":[159],"Here,":[160],"we":[161],"report":[162],"recent":[164],"updates":[165],"interfaces":[170],"resource.":[175]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":21},{"year":2024,"cited_by_count":72},{"year":2023,"cited_by_count":34},{"year":2022,"cited_by_count":58},{"year":2021,"cited_by_count":67},{"year":2020,"cited_by_count":40},{"year":2019,"cited_by_count":9}],"updated_date":"2026-05-05T08:41:31.759640","created_date":"2025-10-10T00:00:00"}
