{"id":"https://openalex.org/W2899234492","doi":"https://doi.org/10.1093/nar/gky1039","title":"MoonDB 2.0: an updated database of extreme multifunctional and moonlighting proteins","display_name":"MoonDB 2.0: an updated database of extreme multifunctional and moonlighting proteins","publication_year":2018,"publication_date":"2018-10-17","ids":{"openalex":"https://openalex.org/W2899234492","doi":"https://doi.org/10.1093/nar/gky1039","mag":"2899234492"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gky1039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky1039","pdf_url":"https://academic.oup.com/nar/article-pdf/47/D1/D398/27437116/gky1039.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/47/D1/D398/27437116/gky1039.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026984064","display_name":"Diogo M. Ribeiro","orcid":"https://orcid.org/0000-0002-0482-7342"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210112918","display_name":"Theories and Approaches of Genomic Complexity","ror":"https://ror.org/025sfbe73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Diogo M Ribeiro","raw_affiliation_strings":["Aix-Marseille Univ, INSERM, TAGC, UMR_S1090, Marseille, France","Theories and Approaches of Genomic Complexity"],"affiliations":[{"raw_affiliation_string":"Aix-Marseille Univ, INSERM, TAGC, UMR_S1090, Marseille, France","institution_ids":["https://openalex.org/I21491767","https://openalex.org/I154526488"]},{"raw_affiliation_string":"Theories and Approaches of Genomic Complexity","institution_ids":["https://openalex.org/I4210112918"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043881583","display_name":"Galadriel Briere","orcid":null},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210112918","display_name":"Theories and Approaches of Genomic Complexity","ror":"https://ror.org/025sfbe73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Galadriel Briere","raw_affiliation_strings":["Aix-Marseille Univ, INSERM, TAGC, UMR_S1090, Marseille, France","Theories and Approaches of Genomic Complexity"],"affiliations":[{"raw_affiliation_string":"Aix-Marseille Univ, INSERM, TAGC, UMR_S1090, Marseille, France","institution_ids":["https://openalex.org/I21491767","https://openalex.org/I154526488"]},{"raw_affiliation_string":"Theories and Approaches of Genomic Complexity","institution_ids":["https://openalex.org/I4210112918"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017249822","display_name":"Beno\u00eet Bely","orcid":"https://orcid.org/0000-0002-0029-9693"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Benoit Bely","raw_affiliation_strings":["The European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"The European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061653381","display_name":"Lionel Spinelli","orcid":"https://orcid.org/0000-0001-9228-8141"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210112918","display_name":"Theories and Approaches of Genomic Complexity","ror":"https://ror.org/025sfbe73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Lionel Spinelli","raw_affiliation_strings":["Aix-Marseille Univ, INSERM, TAGC, UMR_S1090, Marseille, France","Theories and Approaches of Genomic Complexity"],"affiliations":[{"raw_affiliation_string":"Aix-Marseille Univ, INSERM, TAGC, UMR_S1090, Marseille, France","institution_ids":["https://openalex.org/I21491767","https://openalex.org/I154526488"]},{"raw_affiliation_string":"Theories and Approaches of Genomic Complexity","institution_ids":["https://openalex.org/I4210112918"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060161630","display_name":"Christine Brun","orcid":"https://orcid.org/0000-0002-5563-6765"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I21491767","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20","country_code":"FR","type":"education","lineage":["https://openalex.org/I21491767"]},{"id":"https://openalex.org/I4210112918","display_name":"Theories and Approaches of Genomic Complexity","ror":"https://ror.org/025sfbe73","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christine Brun","raw_affiliation_strings":["Aix-Marseille Univ, INSERM, TAGC, UMR_S1090, Marseille, France","CNRS, Marseille, France","Centre National de la Recherche Scientifique","Theories and Approaches of Genomic Complexity"],"affiliations":[{"raw_affiliation_string":"Aix-Marseille Univ, INSERM, TAGC, UMR_S1090, Marseille, France","institution_ids":["https://openalex.org/I21491767","https://openalex.org/I154526488"]},{"raw_affiliation_string":"CNRS, Marseille, France","institution_ids":["https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Centre National de la Recherche Scientifique","institution_ids":["https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Theories and Approaches of Genomic Complexity","institution_ids":["https://openalex.org/I4210112918"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5026984064"],"corresponding_institution_ids":["https://openalex.org/I154526488","https://openalex.org/I21491767","https://openalex.org/I4210112918"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":2237,"currency":"EUR","value_usd":2412},"fwci":3.6335,"has_fulltext":true,"cited_by_count":40,"citation_normalized_percentile":{"value":0.94120509,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"47","issue":"D1","first_page":"D398","last_page":"D402"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9789999723434448,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.9481033086776733},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7950855493545532},{"id":"https://openalex.org/keywords/human-proteins","display_name":"Human proteins","score":0.6189398765563965},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6170816421508789},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4919449985027313},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.4571838080883026},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44678014516830444},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.33882489800453186},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3366248905658722},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.18470963835716248},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1518799364566803},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10271346569061279}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.9481033086776733},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7950855493545532},{"id":"https://openalex.org/C2911029443","wikidata":"https://www.wikidata.org/wiki/Q21296145","display_name":"Human proteins","level":3,"score":0.6189398765563965},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6170816421508789},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4919449985027313},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.4571838080883026},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44678014516830444},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.33882489800453186},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3366248905658722},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.18470963835716248},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1518799364566803},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10271346569061279}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gky1039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky1039","pdf_url":"https://academic.oup.com/nar/article-pdf/47/D1/D398/27437116/gky1039.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmh:oai:HAL:hal-01907669v1","is_oa":true,"landing_page_url":"https://amu.hal.science/hal-01907669","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2019, &#x27E8;10.1093/nar/gky1039&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:5301944","is_oa":false,"landing_page_url":"http://europepmc.org/pmc/articles/PMC6323955","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6323955","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6323955","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gky1039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gky1039","pdf_url":"https://academic.oup.com/nar/article-pdf/47/D1/D398/27437116/gky1039.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309911","display_name":"Aix-Marseille Universit\u00e9","ror":"https://ror.org/035xkbk20"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2899234492.pdf","grobid_xml":"https://content.openalex.org/works/W2899234492.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1547502155","https://openalex.org/W1780426348","https://openalex.org/W1939390351","https://openalex.org/W1981768599","https://openalex.org/W2063889859","https://openalex.org/W2090974720","https://openalex.org/W2096180769","https://openalex.org/W2130810176","https://openalex.org/W2154139219","https://openalex.org/W2192310960","https://openalex.org/W2261598201","https://openalex.org/W2290403240","https://openalex.org/W2604808360","https://openalex.org/W2767268852","https://openalex.org/W2767591791","https://openalex.org/W4233120011","https://openalex.org/W4240629327","https://openalex.org/W6632667454","https://openalex.org/W6638193842","https://openalex.org/W6640751115","https://openalex.org/W6645865582","https://openalex.org/W6666303054","https://openalex.org/W6673358913","https://openalex.org/W6674411820","https://openalex.org/W6687367394","https://openalex.org/W6692788371","https://openalex.org/W6696452558","https://openalex.org/W6745927604","https://openalex.org/W6745976079","https://openalex.org/W6807204201"],"related_works":["https://openalex.org/W2098174226","https://openalex.org/W2767268852","https://openalex.org/W2280346092","https://openalex.org/W4324130327","https://openalex.org/W2899234492","https://openalex.org/W4401870222","https://openalex.org/W4387326064","https://openalex.org/W2736078555","https://openalex.org/W4298042102","https://openalex.org/W3095258175"],"abstract_inverted_index":{"MoonDB":[0,60,155],"2.0":[1],"(http://moondb.hb.univ-amu.fr/)":[2],"is":[3],"a":[4,160],"database":[5],"of":[6,37,51,66,130],"predicted":[7,33],"and":[8,14,45,77,98,119,133,142,144,174],"manually":[9,124],"curated":[10,125],"extreme":[11],"multifunctional":[12],"(EMF)":[13],"moonlighting":[15,131],"proteins,":[16],"i.e.":[17],"proteins":[18,30,52,69,105,121],"that":[19,28,53,122],"perform":[20],"multiple":[21],"unrelated":[22,57],"functions.":[23,58],"We":[24],"have":[25],"previously":[26],"shown":[27],"such":[29],"can":[31],"be":[32,157],"through":[34],"the":[35,64,73,83,151,163,169],"analysis":[36],"their":[38,42,46],"molecular":[39],"interaction":[40,79],"subnetworks,":[41],"functional":[43,75,175],"annotations":[44,76],"association":[47],"to":[48,90,111],"distinct":[49],"groups":[50],"are":[54,147],"involved":[55],"in":[56,106,150],"In":[59,109],"2.0,":[61],"we":[62,86],"updated":[63,158],"set":[65],"human":[67,118],"EMF":[68,104,165],"(238":[70],"proteins),":[71],"using":[72],"latest":[74,170],"protein-protein":[78],"networks.":[80],"Furthermore,":[81],"for":[82],"first":[84],"time,":[85],"applied":[87],"our":[88],"method":[89],"four":[91],"additional":[92],"model":[93],"organisms":[94],"-mouse,":[95],"fly,":[96],"worm":[97],"yeast":[99,120],"-and":[100],"identified":[101],"54":[102],"novel":[103,112,164],"these":[107],"species.":[108],"addition":[110],"predictions,":[113],"this":[114],"update":[115],"contains":[116],"63":[117],"were":[123],"from":[126,168],"literature,":[127],"including":[128],"descriptions":[129],"functions":[132],"associated":[134],"references.":[135],"Importantly,":[136],"MoonDB's":[137],"interface":[138],"was":[139],"fully":[140],"redesigned":[141],"improved,":[143],"its":[145],"entries":[146],"now":[148],"cross-referenced":[149],"UniProt":[152],"Knowledgebase":[153],"(UniProtKB).":[154],"will":[156],"once":[159],"year":[161],"with":[162],"candidates":[166],"calculated":[167],"available":[171],"protein":[172],"interactions":[173],"annotations.":[176]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":5}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
