{"id":"https://openalex.org/W2766803884","doi":"https://doi.org/10.1093/nar/gkx921","title":"StemMapper: a curated gene expression database for stem cell lineage analysis","display_name":"StemMapper: a curated gene expression database for stem cell lineage analysis","publication_year":2017,"publication_date":"2017-10-05","ids":{"openalex":"https://openalex.org/W2766803884","doi":"https://doi.org/10.1093/nar/gkx921","mag":"2766803884","pmid":"https://pubmed.ncbi.nlm.nih.gov/29045725"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkx921","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx921","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D788/23162736/gkx921.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/46/D1/D788/23162736/gkx921.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066204308","display_name":"Jos\u00e9 Pinto","orcid":"https://orcid.org/0000-0001-8682-7559"},"institutions":[{"id":"https://openalex.org/I71503853","display_name":"University of Algarve","ror":"https://ror.org/014g34x36","country_code":"PT","type":"education","lineage":["https://openalex.org/I71503853"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Jos\u00e9 P Pinto","raw_affiliation_strings":["Center for Biomedical Research (CBMR), Universidade do Algarve, Faro, 8005-139, Portugal","Systems Biology and Bioinformatics Laboratory (SysBioLab), Universidade do Algarve, Faro, 8005-139, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biomedical Research (CBMR), Universidade do Algarve, Faro, 8005-139, Portugal","institution_ids":["https://openalex.org/I71503853"]},{"raw_affiliation_string":"Systems Biology and Bioinformatics Laboratory (SysBioLab), Universidade do Algarve, Faro, 8005-139, Portugal","institution_ids":["https://openalex.org/I71503853"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065597818","display_name":"Rui S. R. Machado","orcid":"https://orcid.org/0000-0002-4080-2353"},"institutions":[{"id":"https://openalex.org/I71503853","display_name":"University of Algarve","ror":"https://ror.org/014g34x36","country_code":"PT","type":"education","lineage":["https://openalex.org/I71503853"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Rui S\u00a0R Machado","raw_affiliation_strings":["Center for Biomedical Research (CBMR), Universidade do Algarve, Faro, 8005-139, Portugal","Systems Biology and Bioinformatics Laboratory (SysBioLab), Universidade do Algarve, Faro, 8005-139, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biomedical Research (CBMR), Universidade do Algarve, Faro, 8005-139, Portugal","institution_ids":["https://openalex.org/I71503853"]},{"raw_affiliation_string":"Systems Biology and Bioinformatics Laboratory (SysBioLab), Universidade do Algarve, Faro, 8005-139, Portugal","institution_ids":["https://openalex.org/I71503853"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079794370","display_name":"Ramiro Magno","orcid":"https://orcid.org/0000-0001-5226-3441"},"institutions":[{"id":"https://openalex.org/I4210121181","display_name":"Algarve Biomedical Center","ror":"https://ror.org/02rgrnk13","country_code":"PT","type":"facility","lineage":["https://openalex.org/I4210121181"]},{"id":"https://openalex.org/I71503853","display_name":"University of Algarve","ror":"https://ror.org/014g34x36","country_code":"PT","type":"education","lineage":["https://openalex.org/I71503853"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Ramiro Magno","raw_affiliation_strings":["Algarve Biomedical Center (ABC), Campus Gambelas, Ed. 2 - Ala Norte 8005-139, Faro, Portugal","Center for Biomedical Research (CBMR), Universidade do Algarve, Faro, 8005-139, Portugal"],"raw_orcid":"https://orcid.org/0000-0001-5226-3441","affiliations":[{"raw_affiliation_string":"Algarve Biomedical Center (ABC), Campus Gambelas, Ed. 2 - Ala Norte 8005-139, Faro, Portugal","institution_ids":["https://openalex.org/I4210121181"]},{"raw_affiliation_string":"Center for Biomedical Research (CBMR), Universidade do Algarve, Faro, 8005-139, Portugal","institution_ids":["https://openalex.org/I71503853"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080482737","display_name":"Daniel V. Oliveira","orcid":"https://orcid.org/0000-0003-0622-2934"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Daniel V Oliveira","raw_affiliation_strings":["Center for Alzheimer Research, Department of Neurobiology, Care Sciences and Society, Karolinska Institutet, Stockholm 14157, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Alzheimer Research, Department of Neurobiology, Care Sciences and Society, Karolinska Institutet, Stockholm 14157, Sweden","institution_ids":["https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069558501","display_name":"Susana Machado","orcid":"https://orcid.org/0000-0002-3152-1701"},"institutions":[{"id":"https://openalex.org/I4210121181","display_name":"Algarve Biomedical Center","ror":"https://ror.org/02rgrnk13","country_code":"PT","type":"facility","lineage":["https://openalex.org/I4210121181"]},{"id":"https://openalex.org/I71503853","display_name":"University of Algarve","ror":"https://ror.org/014g34x36","country_code":"PT","type":"education","lineage":["https://openalex.org/I71503853"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Susana Machado","raw_affiliation_strings":["Algarve Biomedical Center (ABC), Campus Gambelas, Ed. 2 - Ala Norte 8005-139, Faro, Portugal","Center for Biomedical Research (CBMR), Universidade do Algarve, Faro, 8005-139, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Algarve Biomedical Center (ABC), Campus Gambelas, Ed. 2 - Ala Norte 8005-139, Faro, Portugal","institution_ids":["https://openalex.org/I4210121181"]},{"raw_affiliation_string":"Center for Biomedical Research (CBMR), Universidade do Algarve, Faro, 8005-139, Portugal","institution_ids":["https://openalex.org/I71503853"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025971823","display_name":"Raquel P. Andrade","orcid":"https://orcid.org/0000-0002-0397-5917"},"institutions":[{"id":"https://openalex.org/I4210121181","display_name":"Algarve Biomedical Center","ror":"https://ror.org/02rgrnk13","country_code":"PT","type":"facility","lineage":["https://openalex.org/I4210121181"]},{"id":"https://openalex.org/I71503853","display_name":"University of Algarve","ror":"https://ror.org/014g34x36","country_code":"PT","type":"education","lineage":["https://openalex.org/I71503853"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Raquel P Andrade","raw_affiliation_strings":["Algarve Biomedical Center (ABC), Campus Gambelas, Ed. 2 - Ala Norte 8005-139, Faro, Portugal","Center for Biomedical Research (CBMR), Universidade do Algarve, Faro, 8005-139, Portugal","Department of Medicine and Biomedical Sciences, Universidade do Algarve 8005-139, Faro, Portugal"],"raw_orcid":"https://orcid.org/0000-0002-0397-5917","affiliations":[{"raw_affiliation_string":"Algarve Biomedical Center (ABC), Campus Gambelas, Ed. 2 - Ala Norte 8005-139, Faro, Portugal","institution_ids":["https://openalex.org/I4210121181"]},{"raw_affiliation_string":"Center for Biomedical Research (CBMR), Universidade do Algarve, Faro, 8005-139, Portugal","institution_ids":["https://openalex.org/I71503853"]},{"raw_affiliation_string":"Department of Medicine and Biomedical Sciences, Universidade do Algarve 8005-139, Faro, Portugal","institution_ids":["https://openalex.org/I71503853"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087821329","display_name":"Jos\u00e9 Bragan\u00e7a","orcid":"https://orcid.org/0000-0001-9566-400X"},"institutions":[{"id":"https://openalex.org/I4210121181","display_name":"Algarve Biomedical Center","ror":"https://ror.org/02rgrnk13","country_code":"PT","type":"facility","lineage":["https://openalex.org/I4210121181"]},{"id":"https://openalex.org/I71503853","display_name":"University of Algarve","ror":"https://ror.org/014g34x36","country_code":"PT","type":"education","lineage":["https://openalex.org/I71503853"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Bragan\u00e7a","raw_affiliation_strings":["Algarve Biomedical Center (ABC), Campus Gambelas, Ed. 2 - Ala Norte 8005-139, Faro, Portugal","Center for Biomedical Research (CBMR), Universidade do Algarve, Faro, 8005-139, Portugal","Department of Medicine and Biomedical Sciences, Universidade do Algarve 8005-139, Faro, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Algarve Biomedical Center (ABC), Campus Gambelas, Ed. 2 - Ala Norte 8005-139, Faro, Portugal","institution_ids":["https://openalex.org/I4210121181"]},{"raw_affiliation_string":"Center for Biomedical Research (CBMR), Universidade do Algarve, Faro, 8005-139, Portugal","institution_ids":["https://openalex.org/I71503853"]},{"raw_affiliation_string":"Department of Medicine and Biomedical Sciences, Universidade do Algarve 8005-139, Faro, Portugal","institution_ids":["https://openalex.org/I71503853"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101781914","display_name":"Isabel Duarte","orcid":"https://orcid.org/0000-0003-0060-2936"},"institutions":[{"id":"https://openalex.org/I4210121181","display_name":"Algarve Biomedical Center","ror":"https://ror.org/02rgrnk13","country_code":"PT","type":"facility","lineage":["https://openalex.org/I4210121181"]},{"id":"https://openalex.org/I71503853","display_name":"University of Algarve","ror":"https://ror.org/014g34x36","country_code":"PT","type":"education","lineage":["https://openalex.org/I71503853"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Isabel Duarte","raw_affiliation_strings":["Algarve Biomedical Center (ABC), Campus Gambelas, Ed. 2 - Ala Norte 8005-139, Faro, Portugal","Center for Biomedical Research (CBMR), Universidade do Algarve, Faro, 8005-139, Portugal"],"raw_orcid":"https://orcid.org/0000-0003-0060-2936","affiliations":[{"raw_affiliation_string":"Algarve Biomedical Center (ABC), Campus Gambelas, Ed. 2 - Ala Norte 8005-139, Faro, Portugal","institution_ids":["https://openalex.org/I4210121181"]},{"raw_affiliation_string":"Center for Biomedical Research (CBMR), Universidade do Algarve, Faro, 8005-139, Portugal","institution_ids":["https://openalex.org/I71503853"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046669390","display_name":"Matthias E. Futschik","orcid":"https://orcid.org/0000-0002-6245-8071"},"institutions":[{"id":"https://openalex.org/I71503853","display_name":"University of Algarve","ror":"https://ror.org/014g34x36","country_code":"PT","type":"education","lineage":["https://openalex.org/I71503853"]},{"id":"https://openalex.org/I897542642","display_name":"University of Plymouth","ror":"https://ror.org/008n7pv89","country_code":"GB","type":"education","lineage":["https://openalex.org/I897542642"]}],"countries":["GB","PT"],"is_corresponding":true,"raw_author_name":"Matthias E Futschik","raw_affiliation_strings":["Center for Biomedical Research (CBMR), Universidade do Algarve, Faro, 8005-139, Portugal","Centre of Marine Sciences (CCMAR), Universidade do Algarve, Faro 8005-139, Portugal","School of Biomedical & Healthcare Sciences, Plymouth University Peninsula Schools of Medicine and Dentistry, Plymouth, Devon PL4 8AA, UK","Systems Biology and Bioinformatics Laboratory (SysBioLab), Universidade do Algarve, Faro, 8005-139, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biomedical Research (CBMR), Universidade do Algarve, Faro, 8005-139, Portugal","institution_ids":["https://openalex.org/I71503853"]},{"raw_affiliation_string":"Centre of Marine Sciences (CCMAR), Universidade do Algarve, Faro 8005-139, Portugal","institution_ids":["https://openalex.org/I71503853"]},{"raw_affiliation_string":"School of Biomedical & Healthcare Sciences, Plymouth University Peninsula Schools of Medicine and Dentistry, Plymouth, Devon PL4 8AA, UK","institution_ids":["https://openalex.org/I897542642"]},{"raw_affiliation_string":"Systems Biology and Bioinformatics Laboratory (SysBioLab), Universidade do Algarve, Faro, 8005-139, Portugal","institution_ids":["https://openalex.org/I71503853"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5046669390","https://openalex.org/A5066204308"],"corresponding_institution_ids":["https://openalex.org/I71503853","https://openalex.org/I897542642"],"apc_list":{"value":3992,"currency":"USD","value_usd":3992},"apc_paid":{"value":3992,"currency":"USD","value_usd":3992},"fwci":1.4239,"has_fulltext":true,"cited_by_count":43,"citation_normalized_percentile":{"value":0.81711282,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"46","issue":"D1","first_page":"D788","last_page":"D793"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7707432508468628},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.6575493812561035},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5351748466491699},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.50947505235672},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.465564489364624},{"id":"https://openalex.org/keywords/lineage","display_name":"Lineage (genetic)","score":0.42462658882141113},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3864235579967499},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3271433115005493},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.29939597845077515},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2773781716823578},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1773551106452942}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7707432508468628},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.6575493812561035},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5351748466491699},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.50947505235672},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.465564489364624},{"id":"https://openalex.org/C2776817793","wikidata":"https://www.wikidata.org/wiki/Q6553369","display_name":"Lineage (genetic)","level":3,"score":0.42462658882141113},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3864235579967499},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3271433115005493},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.29939597845077515},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2773781716823578},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1773551106452942},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001253","descriptor_name":"Astrocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001253","descriptor_name":"Astrocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001253","descriptor_name":"Astrocytes","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013234","descriptor_name":"Stem Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":true},{"descriptor_ui":"D013234","descriptor_name":"Stem Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":true},{"descriptor_ui":"D013234","descriptor_name":"Stem Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":true},{"descriptor_ui":"D013234","descriptor_name":"Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D013234","descriptor_name":"Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D013234","descriptor_name":"Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019070","descriptor_name":"Cell Lineage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025341","descriptor_name":"Principal Component Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058953","descriptor_name":"Neural Stem Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D058953","descriptor_name":"Neural Stem Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D058953","descriptor_name":"Neural Stem Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkx921","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx921","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D788/23162736/gkx921.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:29045725","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29045725","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5753294","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5753294","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:pearl.plymouth.ac.uk:10026.1/10117","is_oa":false,"landing_page_url":"http://hdl.handle.net/10026.1/10117","pdf_url":null,"source":{"id":"https://openalex.org/S4306402507","display_name":"PEARL (University of Plymouth)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I897542642","host_organization_name":"University of Plymouth","host_organization_lineage":["https://openalex.org/I897542642"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal-article"},{"id":"pmh:oai:sapientia.ualg.pt:10400.1/11338","is_oa":true,"landing_page_url":"http://hdl.handle.net/10400.1/11338","pdf_url":null,"source":{"id":"https://openalex.org/S4306402433","display_name":"Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkx921","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx921","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D788/23162736/gkx921.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2354070347","display_name":null,"funder_award_id":"IF/00881/2013","funder_id":"https://openalex.org/F4320330258","funder_display_name":"Centro de Ci\u00eancias do Mar"},{"id":"https://openalex.org/G3097230163","display_name":null,"funder_award_id":"SFRH/BPD/96890/2013","funder_id":"https://openalex.org/F4320330258","funder_display_name":"Centro de Ci\u00eancias do Mar"},{"id":"https://openalex.org/G4503627547","display_name":null,"funder_award_id":"Multi/04326/2013","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5223037244","display_name":null,"funder_award_id":"UID/Multi/04326/2013","funder_id":"https://openalex.org/F4320330262","funder_display_name":"Centro de Investiga\u00e7\u00e3o em Biomedicina"},{"id":"https://openalex.org/G5788280754","display_name":null,"funder_award_id":"Multi/04326/2013","funder_id":"https://openalex.org/F4320330258","funder_display_name":"Centro de Ci\u00eancias do Mar"},{"id":"https://openalex.org/G587266262","display_name":null,"funder_award_id":"UID/Multi/04326/2013","funder_id":"https://openalex.org/F4320330258","funder_display_name":"Centro de Ci\u00eancias do Mar"},{"id":"https://openalex.org/G6588149388","display_name":"CONTROLO TEMPORAL DA DIFERENCIA\u00c7\u00c3O CELULAR: Rede de Regula\u00e7\u00e3o Gen\u00e9tica no Controlo Temporal da Especifica\u00e7\u00e3o da Mesoderme","funder_award_id":"PTDC/BEX-BID/5410/2014","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G7363432985","display_name":"Centro de Investiga\u00e7\u00e3o em Biomedicina","funder_award_id":"UID/BIM/04773/2013","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G8484500310","display_name":null,"funder_award_id":"/04326/2013","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G8658714124","display_name":null,"funder_award_id":"IF/00881/2013","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320330258","display_name":"Centro de Ci\u00eancias do Mar","ror":null},{"id":"https://openalex.org/F4320330262","display_name":"Centro de Investiga\u00e7\u00e3o em Biomedicina","ror":null},{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2766803884.pdf","grobid_xml":"https://content.openalex.org/works/W2766803884.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1563425389","https://openalex.org/W1568117622","https://openalex.org/W1585217303","https://openalex.org/W1869510227","https://openalex.org/W1966231959","https://openalex.org/W1968092893","https://openalex.org/W1978683461","https://openalex.org/W1992876679","https://openalex.org/W2000566059","https://openalex.org/W2001903358","https://openalex.org/W2004445343","https://openalex.org/W2015595897","https://openalex.org/W2025569286","https://openalex.org/W2047040382","https://openalex.org/W2052670712","https://openalex.org/W2054543474","https://openalex.org/W2069230139","https://openalex.org/W2069611371","https://openalex.org/W2073483289","https://openalex.org/W2094116748","https://openalex.org/W2113878188","https://openalex.org/W2116634113","https://openalex.org/W2118258530","https://openalex.org/W2129271267","https://openalex.org/W2133019048","https://openalex.org/W2133566806","https://openalex.org/W2146749911","https://openalex.org/W2150892663","https://openalex.org/W2161144742","https://openalex.org/W2170190422","https://openalex.org/W2323091991","https://openalex.org/W2412747691","https://openalex.org/W2558570141"],"related_works":["https://openalex.org/W2399513595","https://openalex.org/W4388386498","https://openalex.org/W2028462563","https://openalex.org/W2942994004","https://openalex.org/W2982720988","https://openalex.org/W2506149209","https://openalex.org/W2352153050","https://openalex.org/W3150324899","https://openalex.org/W2523545060","https://openalex.org/W4229998356"],"abstract_inverted_index":{"Transcriptomic":[0],"data":[1,75,142,163],"have":[2],"become":[3],"a":[4,16,60,110,144],"fundamental":[5],"resource":[6,68],"for":[7,15,49,69,76,173],"stem":[8],"cell":[9],"(SC)":[10],"biologists":[11],"as":[12,14,24],"well":[13],"wider":[17],"research":[18,180],"audience":[19],"studying":[20],"SC-related":[21],"processes":[22],"such":[23],"aging,":[25],"embryonic":[26],"development":[27],"and":[28,34,38,66,81,92,103,124,134,176,186],"prevalent":[29],"diseases":[30],"including":[31],"cancer,":[32],"diabetes":[33],"neurodegenerative":[35],"diseases.":[36],"Access":[37],"analysis":[39,149,187],"of":[40,44,79,96,113,117,137,160,188],"the":[41,118,158,161,171,184],"growing":[42],"amount":[43],"freely":[45,194],"available":[46],"transcriptomics":[47,98],"datasets":[48,99,120],"SCs,":[50],"however,":[51],"are":[52],"not":[53],"trivial":[54],"tasks.":[55],"Here,":[56],"we":[57],"present":[58],"StemMapper,":[59],"manually":[61,125],"curated":[62],"gene":[63,140],"expression":[64,141],"database":[65],"comprehensive":[67,145],"SC":[70,114,139,154,179,189],"research,":[71],"built":[72],"on":[73,87],"integrated":[74,119,162],"different":[77],"lineages":[78],"human":[80],"mouse":[82],"SCs.":[83],"It":[84],"is":[85,193],"based":[86],"careful":[88],"selection,":[89],"standardized":[90],"processing":[91],"stringent":[93],"quality":[94],"control":[95],"relevant":[97],"to":[100],"minimize":[101],"artefacts,":[102],"includes":[104],"currently":[105],"over":[106],"960":[107],"transcriptomes":[108],"covering":[109],"broad":[111],"range":[112],"types.":[115],"Each":[116],"was":[121],"individually":[122],"inspected":[123],"curated.":[126],"StemMapper's":[127],"user-friendly":[128],"interface":[129],"enables":[130],"fast":[131],"querying,":[132],"comparison,":[133],"interactive":[135],"visualization":[136],"quality-controlled":[138],"in":[143,178],"manner.":[146],"A":[147],"proof-of-principle":[148],"discovering":[150],"novel":[151],"putative":[152],"astrocyte/neural":[153],"lineage":[155],"markers":[156],"exemplifies":[157],"utility":[159],"resource.":[164],"We":[165],"believe":[166],"that":[167],"StemMapper":[168,192],"can":[169],"open":[170],"way":[172],"new":[174],"insights":[175],"advances":[177],"by":[181],"greatly":[182],"simplifying":[183],"access":[185],"transcriptomic":[190],"data.":[191],"accessible":[195],"at":[196],"http://stemmapper.sysbiolab.eu.":[197]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
