{"id":"https://openalex.org/W2609643846","doi":"https://doi.org/10.1093/nar/gkx335","title":"The pepATTRACT web server for blind, large-scale peptide\u2013protein docking","display_name":"The pepATTRACT web server for blind, large-scale peptide\u2013protein docking","publication_year":2017,"publication_date":"2017-04-18","ids":{"openalex":"https://openalex.org/W2609643846","doi":"https://doi.org/10.1093/nar/gkx335","mag":"2609643846","pmid":"https://pubmed.ncbi.nlm.nih.gov/28460116"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkx335","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx335","pdf_url":"https://academic.oup.com/nar/article-pdf/45/W1/W361/18137355/gkx335.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/45/W1/W361/18137355/gkx335.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027261495","display_name":"Sjoerd J. de Vries","orcid":"https://orcid.org/0000-0002-7701-3454"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sjoerd J. de\u00a0Vries","raw_affiliation_strings":["INSERM UMR-S 973/Universit\u00e9 Paris Diderot/Sorbonne Paris Cit\u00e9/RPBS, Paris 75205, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INSERM UMR-S 973/Universit\u00e9 Paris Diderot/Sorbonne Paris Cit\u00e9/RPBS, Paris 75205, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I169173203","https://openalex.org/I204730241","https://openalex.org/I4210091437"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074577875","display_name":"Julien Rey","orcid":"https://orcid.org/0000-0002-3050-511X"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Julien Rey","raw_affiliation_strings":["INSERM UMR-S 973/Universit\u00e9 Paris Diderot/Sorbonne Paris Cit\u00e9/RPBS, Paris 75205, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INSERM UMR-S 973/Universit\u00e9 Paris Diderot/Sorbonne Paris Cit\u00e9/RPBS, Paris 75205, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I169173203","https://openalex.org/I204730241","https://openalex.org/I4210091437"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035327789","display_name":"Christina Schindler","orcid":"https://orcid.org/0000-0002-8980-048X"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christina\u00a0E.\u00a0M. Schindler","raw_affiliation_strings":["Physik T38, Technische Universit\u00e4t M\u00fcnchen, Garching 85748, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Physik T38, Technische Universit\u00e4t M\u00fcnchen, Garching 85748, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090330416","display_name":"Martin Zacharias","orcid":"https://orcid.org/0000-0001-5163-2663"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Zacharias","raw_affiliation_strings":["Physik T38, Technische Universit\u00e4t M\u00fcnchen, Garching 85748, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Physik T38, Technische Universit\u00e4t M\u00fcnchen, Garching 85748, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002795410","display_name":"Pierre Tuff\u00e9ry","orcid":"https://orcid.org/0000-0003-1033-9895"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I169173203","display_name":"D\u00e9l\u00e9gation Paris 7","ror":"https://ror.org/00bw5n526","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488","https://openalex.org/I169173203"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Pierre Tuffery","raw_affiliation_strings":["INSERM UMR-S 973/Universit\u00e9 Paris Diderot/Sorbonne Paris Cit\u00e9/RPBS, Paris 75205, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INSERM UMR-S 973/Universit\u00e9 Paris Diderot/Sorbonne Paris Cit\u00e9/RPBS, Paris 75205, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I169173203","https://openalex.org/I204730241","https://openalex.org/I4210091437"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5002795410"],"corresponding_institution_ids":["https://openalex.org/I154526488","https://openalex.org/I169173203","https://openalex.org/I204730241","https://openalex.org/I4210091437"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":2130,"currency":"EUR","value_usd":2297},"fwci":4.7233,"has_fulltext":true,"cited_by_count":128,"citation_normalized_percentile":{"value":0.9654163,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"45","issue":"W1","first_page":"W361","last_page":"W364"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.7799290418624878},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.7238227725028992},{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.668839693069458},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5897940993309021},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5498006343841553},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5243639945983887},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.5022516250610352},{"id":"https://openalex.org/keywords/protein\u2013ligand-docking","display_name":"Protein\u2013ligand docking","score":0.4349738359451294},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42866966128349304},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.42323267459869385},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.31895357370376587},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.25343549251556396},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.1978154182434082},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.15603315830230713},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08671781420707703},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.0825958251953125}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.7799290418624878},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.7238227725028992},{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.668839693069458},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5897940993309021},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5498006343841553},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5243639945983887},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.5022516250610352},{"id":"https://openalex.org/C77319485","wikidata":"https://www.wikidata.org/wiki/Q7251520","display_name":"Protein\u2013ligand docking","level":4,"score":0.4349738359451294},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42866966128349304},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.42323267459869385},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.31895357370376587},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.25343549251556396},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.1978154182434082},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.15603315830230713},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08671781420707703},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.0825958251953125},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021984","descriptor_name":"Cyclophilin A","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D021984","descriptor_name":"Cyclophilin A","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D021984","descriptor_name":"Cyclophilin A","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkx335","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx335","pdf_url":"https://academic.oup.com/nar/article-pdf/45/W1/W361/18137355/gkx335.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:28460116","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28460116","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5570166","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5570166","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkx335","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx335","pdf_url":"https://academic.oup.com/nar/article-pdf/45/W1/W361/18137355/gkx335.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5802621812","display_name":null,"funder_award_id":"ANR-11-INBS","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6068764742","display_name":"Institut fran\u00e7ais de bioinformatique","funder_award_id":"ANR-11-INBS-0013","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6546994086","display_name":null,"funder_award_id":"UMR-S 973","funder_id":"https://openalex.org/F4320320893","funder_display_name":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320320893","display_name":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale","ror":"https://ror.org/02vjkv261"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2609643846.pdf","grobid_xml":"https://content.openalex.org/works/W2609643846.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1516665572","https://openalex.org/W1609599771","https://openalex.org/W1768303176","https://openalex.org/W1938743025","https://openalex.org/W1970431511","https://openalex.org/W1972043325","https://openalex.org/W1987305898","https://openalex.org/W1998624640","https://openalex.org/W2023272942","https://openalex.org/W2047399603","https://openalex.org/W2054954101","https://openalex.org/W2064660701","https://openalex.org/W2073911195","https://openalex.org/W2119636371","https://openalex.org/W2138821767","https://openalex.org/W2143094533","https://openalex.org/W2156876686","https://openalex.org/W2325296456","https://openalex.org/W2342678031","https://openalex.org/W2344689512","https://openalex.org/W2520917239","https://openalex.org/W2556787714"],"related_works":["https://openalex.org/W3157357317","https://openalex.org/W2999997950","https://openalex.org/W2027666746","https://openalex.org/W4313644653","https://openalex.org/W1581147483","https://openalex.org/W4310018788","https://openalex.org/W2417162538","https://openalex.org/W1567411871","https://openalex.org/W2329052364","https://openalex.org/W2131900949"],"abstract_inverted_index":{"Peptide-protein":[0],"interactions":[1],"are":[2,28],"ubiquitous":[3],"in":[4,65,120,124,171],"the":[5,13,32,53,104,110,113,121,127,131,143,156,165],"cell":[6],"and":[7],"form":[8],"an":[9],"important":[10],"part":[11],"of":[12,22,59,73,107,126,140],"interactome.":[14],"Computational":[15],"docking":[16,39,86,174],"methods":[17],"can":[18],"complement":[19],"experimental":[20],"characterization":[21],"these":[23],"complexes,":[24],"but":[25,142],"current":[26],"protocols":[27,87],"not":[29,48],"applicable":[30],"on":[31],"proteome":[33],"scale.":[34],"pepATTRACT":[35,62,133,178],"is":[36,42,79,146,160,180],"a":[37,97,117],"novel":[38,98],"protocol":[40],"that":[41,88,101,158],"fully":[43,161],"blind,":[44,162],"i.e.":[45],"it":[46,159],"does":[47],"require":[49,90],"any":[50],"information":[51],"about":[52],"binding":[54,91],"site.":[55],"In":[56],"various":[57],"stages":[58],"its":[60],"development,":[61],"has":[63],"participated":[64],"CAPRI,":[66],"making":[67],"successful":[68],"predictions":[69],"for":[70,169],"five":[71],"out":[72,103],"seven":[74],"protein-peptide":[75,173],"targets.":[76],"Its":[77],"performance":[78],"similar":[80],"or":[81],"better":[82],"than":[83],"state-of-the-art":[84],"local":[85],"do":[89],"site":[92],"information.":[93],"Here":[94],"we":[95],"present":[96],"web":[99,114,166],"server":[100,115,167,179],"carries":[102],"rigid-body":[105,177],"stage":[106],"pepATTRACT.":[108],"On":[109],"peptiDB":[111],"benchmark,":[112],"generates":[116],"correct":[118],"model":[119],"top":[122],"50":[123],"34%":[125],"cases.":[128],"Compared":[129],"to":[130,137,151],"full":[132],"protocol,":[134],"this":[135,163],"leads":[136],"some":[138],"loss":[139],"performance,":[141],"computation":[144],"time":[145],"reduced":[147],"from":[148],"\u223c18":[149],"h":[150],"\u223c10":[152],"min.":[153],"Combined":[154],"with":[155],"fact":[157],"makes":[164],"well-suited":[168],"large-scale":[170],"silico":[172],"experiments.":[175],"The":[176],"freely":[181],"available":[182],"at":[183],"http://bioserv.rpbs.univ-paris-diderot.fr/services/pepATTRACT.":[184]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":23},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":15},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":3}],"updated_date":"2026-08-12T07:12:00.856984","created_date":"2017-05-05T00:00:00"}
