{"id":"https://openalex.org/W2608515760","doi":"https://doi.org/10.1093/nar/gkx295","title":"MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data","display_name":"MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data","publication_year":2017,"publication_date":"2017-04-12","ids":{"openalex":"https://openalex.org/W2608515760","doi":"https://doi.org/10.1093/nar/gkx295","mag":"2608515760","pmid":"https://pubmed.ncbi.nlm.nih.gov/28449106"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkx295","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx295","pdf_url":"https://academic.oup.com/nar/article-pdf/45/W1/W180/18137250/gkx295.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/45/W1/W180/18137250/gkx295.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047579444","display_name":"Achal Dhariwal","orcid":"https://orcid.org/0000-0002-0882-9724"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Achal Dhariwal","raw_affiliation_strings":["Department of Animal Science, McGill University, Quebec, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Science, McGill University, Quebec, Canada","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109264362","display_name":"Jasmine Chong","orcid":null},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jasmine Chong","raw_affiliation_strings":["Institute of Parasitology, McGill University, Quebec, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Parasitology, McGill University, Quebec, Canada","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045308624","display_name":"Salam M. Habib","orcid":"https://orcid.org/0000-0002-2430-0628"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Salam Habib","raw_affiliation_strings":["School of Dietetics and Human Nutrition, McGill University, Quebec, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Dietetics and Human Nutrition, McGill University, Quebec, Canada","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082836266","display_name":"Irah L. King","orcid":"https://orcid.org/0000-0001-6990-7231"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Irah L. King","raw_affiliation_strings":["Department of Microbiology and Immunology, McGill University, Quebec, Canada","Microbiome and Disease Tolerance Center (MDTC), McGill University, Quebec, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Immunology, McGill University, Quebec, Canada","institution_ids":["https://openalex.org/I5023651"]},{"raw_affiliation_string":"Microbiome and Disease Tolerance Center (MDTC), McGill University, Quebec, Canada","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014569062","display_name":"Luis B. Agellon","orcid":"https://orcid.org/0000-0002-2209-8702"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Luis B. Agellon","raw_affiliation_strings":["School of Dietetics and Human Nutrition, McGill University, Quebec, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Dietetics and Human Nutrition, McGill University, Quebec, Canada","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073663029","display_name":"Jianguo Xia","orcid":"https://orcid.org/0000-0003-2040-2624"},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Jianguo Xia","raw_affiliation_strings":["Department of Animal Science, McGill University, Quebec, Canada","Department of Microbiology and Immunology, McGill University, Quebec, Canada","Institute of Parasitology, McGill University, Quebec, Canada","Microbiome and Disease Tolerance Center (MDTC), McGill University, Quebec, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Science, McGill University, Quebec, Canada","institution_ids":["https://openalex.org/I5023651"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, McGill University, Quebec, Canada","institution_ids":["https://openalex.org/I5023651"]},{"raw_affiliation_string":"Institute of Parasitology, McGill University, Quebec, Canada","institution_ids":["https://openalex.org/I5023651"]},{"raw_affiliation_string":"Microbiome and Disease Tolerance Center (MDTC), McGill University, Quebec, Canada","institution_ids":["https://openalex.org/I5023651"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5073663029"],"corresponding_institution_ids":["https://openalex.org/I5023651"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":38.7194,"has_fulltext":false,"cited_by_count":1989,"citation_normalized_percentile":{"value":1.0,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"45","issue":"W1","first_page":"W180","last_page":"W188"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.6958869099617004},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6956910490989685},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.6215384006500244},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5485289692878723},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.5437333583831787},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5116217732429504},{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.5099073648452759},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.49154552817344666},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48069292306900024},{"id":"https://openalex.org/keywords/human-microbiome-project","display_name":"Human Microbiome Project","score":0.45840007066726685},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4573400318622589},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.45250236988067627},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3684449791908264},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32122665643692017},{"id":"https://openalex.org/keywords/human-microbiome","display_name":"Human microbiome","score":0.29176145792007446},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.22337141633033752}],"concepts":[{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.6958869099617004},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6956910490989685},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.6215384006500244},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5485289692878723},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.5437333583831787},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5116217732429504},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.5099073648452759},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.49154552817344666},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48069292306900024},{"id":"https://openalex.org/C190944805","wikidata":"https://www.wikidata.org/wiki/Q3922751","display_name":"Human Microbiome Project","level":4,"score":0.45840007066726685},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4573400318622589},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.45250236988067627},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3684449791908264},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32122665643692017},{"id":"https://openalex.org/C91478284","wikidata":"https://www.wikidata.org/wiki/Q6623796","display_name":"Human microbiome","level":3,"score":0.29176145792007446},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.22337141633033752},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012867","descriptor_name":"Skin","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D012867","descriptor_name":"Skin","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D012867","descriptor_name":"Skin","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014621","descriptor_name":"Vagina","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D014621","descriptor_name":"Vagina","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D014621","descriptor_name":"Vagina","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D041981","descriptor_name":"Gastrointestinal Tract","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D041981","descriptor_name":"Gastrointestinal Tract","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D041981","descriptor_name":"Gastrointestinal Tract","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkx295","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx295","pdf_url":"https://academic.oup.com/nar/article-pdf/45/W1/W180/18137250/gkx295.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:28449106","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28449106","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5570177","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5570177","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:escholarship.mcgill.ca:fn107403q","is_oa":false,"landing_page_url":"https://escholarship.mcgill.ca/concern/articles/fn107403q","pdf_url":null,"source":{"id":"https://openalex.org/S4306401568","display_name":"eScholarship@McGill (McGill)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5023651","host_organization_name":"McGill University","host_organization_lineage":["https://openalex.org/I5023651"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://academic.oup.com/nar/article/45/W1/W180/3760191?login=true","raw_type":"Article"},{"id":"pmh:oai:escholarship.mcgill.ca:fq978081c","is_oa":true,"landing_page_url":"https://escholarship.mcgill.ca/concern/articles/fq978081c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401568","display_name":"eScholarship@McGill (McGill)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5023651","host_organization_name":"McGill University","host_organization_lineage":["https://openalex.org/I5023651"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://doi.org/10.1093/nar/gkx295","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkx295","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx295","pdf_url":"https://academic.oup.com/nar/article-pdf/45/W1/W180/18137250/gkx295.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4099999964237213}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2608515760.pdf"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W1566831845","https://openalex.org/W1811186957","https://openalex.org/W1976327004","https://openalex.org/W1989348205","https://openalex.org/W1995393174","https://openalex.org/W1995962575","https://openalex.org/W2004014148","https://openalex.org/W2026006003","https://openalex.org/W2027319259","https://openalex.org/W2056279562","https://openalex.org/W2072970694","https://openalex.org/W2084590843","https://openalex.org/W2097124003","https://openalex.org/W2097948046","https://openalex.org/W2101606890","https://openalex.org/W2103761010","https://openalex.org/W2108718991","https://openalex.org/W2110082875","https://openalex.org/W2110300022","https://openalex.org/W2110350344","https://openalex.org/W2112320611","https://openalex.org/W2113758107","https://openalex.org/W2114104545","https://openalex.org/W2116895571","https://openalex.org/W2125826054","https://openalex.org/W2128610603","https://openalex.org/W2128769815","https://openalex.org/W2130731460","https://openalex.org/W2133856765","https://openalex.org/W2136552678","https://openalex.org/W2139118683","https://openalex.org/W2151241623","https://openalex.org/W2153109441","https://openalex.org/W2155897723","https://openalex.org/W2163250554","https://openalex.org/W2163903604","https://openalex.org/W2164027931","https://openalex.org/W2179438025","https://openalex.org/W2190655222","https://openalex.org/W2230655163","https://openalex.org/W2340700016","https://openalex.org/W2341117915","https://openalex.org/W2344078805","https://openalex.org/W2508175702","https://openalex.org/W2530896378","https://openalex.org/W2553548418","https://openalex.org/W2559133556","https://openalex.org/W2559597060","https://openalex.org/W2569284525","https://openalex.org/W2592244930","https://openalex.org/W2911964244"],"related_works":["https://openalex.org/W3043668926","https://openalex.org/W3036436206","https://openalex.org/W4238948313","https://openalex.org/W4389452281","https://openalex.org/W3111832393","https://openalex.org/W3000916974","https://openalex.org/W3183189600","https://openalex.org/W3134948850","https://openalex.org/W2573498001","https://openalex.org/W2769345399"],"abstract_inverted_index":{"The":[0,59],"widespread":[1],"application":[2],"of":[3,15,19,95,146],"next-generation":[4],"sequencing":[5],"technologies":[6],"has":[7,61],"revolutionized":[8],"microbiome":[9,36,101],"research":[10],"by":[11],"enabling":[12],"high-throughput":[13],"profiling":[14,141],"the":[16,25,39,108,131,152,177],"genetic":[17],"contents":[18],"microbial":[20],"communities.":[21],"How":[22],"to":[23,51,91,185],"analyze":[24],"resulting":[26],"large":[27],"complex":[28],"datasets":[29],"remains":[30],"a":[31,74,191],"key":[32],"challenge":[33],"in":[34,81],"current":[35],"studies.":[37,102],"Over":[38],"past":[40],"decade,":[41],"powerful":[42],"computational":[43],"pipelines":[44],"and":[45,57,67,83,121,142,173,198],"robust":[46],"protocols":[47],"have":[48],"been":[49],"established":[50],"enable":[52,92],"efficient":[53],"raw":[54],"data":[55,97,138,189,194],"processing":[56],"annotation.":[58],"focus":[60],"shifted":[62],"toward":[63],"downstream":[64],"statistical":[65],"analysis":[66,94,120,164],"functional":[68,122,140],"interpretation.":[69],"Here,":[70],"we":[71],"introduce":[72],"MicrobiomeAnalyst,":[73],"user-friendly":[75],"tool":[76],"that":[77],"integrates":[78],"recent":[79],"progress":[80],"statistics":[82],"visualization":[84,145],"techniques,":[85],"coupled":[86],"with":[87,179,190],"novel":[88],"knowledge":[89],"bases,":[90],"comprehensive":[93],"common":[96],"outputs":[98],"produced":[99],"from":[100,171],"MicrobiomeAnalyst":[103,201],"contains":[104],"four":[105],"modules":[106],"-":[107],"Marker":[109],"Data":[110,133,181],"Profiling":[111,134],"module":[112,135,157,182],"offers":[113],"various":[114],"options":[115],"for":[116,195],"community":[117],"profiling,":[118],"comparative":[119],"prediction":[123],"based":[124],"on":[125],"16S":[126],"rRNA":[127],"marker":[128],"gene":[129],"data;":[130,151],"Shotgun":[132],"supports":[136],"exploratory":[137],"analysis,":[139],"metabolic":[143],"network":[144],"shotgun":[147],"metagenomics":[148],"or":[149],"metatranscriptomics":[150],"Taxon":[153],"Set":[154],"Enrichment":[155],"Analysis":[156],"helps":[158],"interpret":[159],"taxonomic":[160],"signatures":[161],"via":[162],"enrichment":[163],"against":[165],">300":[166],"taxon":[167],"sets":[168],"manually":[169],"curated":[170],"literature":[172],"public":[174,192],"databases;":[175],"finally,":[176],"Projection":[178],"Public":[180],"allows":[183],"users":[184],"visually":[186],"explore":[187],"their":[188],"reference":[193],"pattern":[196],"discovery":[197],"biological":[199],"insights.":[200],"is":[202],"freely":[203],"available":[204],"at":[205],"http://www.microbiomeanalyst.ca.":[206]},"counts_by_year":[{"year":2026,"cited_by_count":101},{"year":2025,"cited_by_count":212},{"year":2024,"cited_by_count":295},{"year":2023,"cited_by_count":280},{"year":2022,"cited_by_count":311},{"year":2021,"cited_by_count":330},{"year":2020,"cited_by_count":253},{"year":2019,"cited_by_count":152},{"year":2018,"cited_by_count":47},{"year":2017,"cited_by_count":8}],"updated_date":"2026-08-15T07:11:24.734988","created_date":"2025-10-10T00:00:00"}
