{"id":"https://openalex.org/W2769591387","doi":"https://doi.org/10.1093/nar/gkx1158","title":"Expression Atlas: gene and protein expression across multiple studies and organisms","display_name":"Expression Atlas: gene and protein expression across multiple studies and organisms","publication_year":2017,"publication_date":"2017-11-06","ids":{"openalex":"https://openalex.org/W2769591387","doi":"https://doi.org/10.1093/nar/gkx1158","mag":"2769591387","pmid":"https://pubmed.ncbi.nlm.nih.gov/29165655"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkx1158","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx1158","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D246/23162489/gkx1158.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/46/D1/D246/23162489/gkx1158.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027778199","display_name":"Irene Papatheodorou","orcid":"https://orcid.org/0000-0001-7270-5470"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Irene Papatheodorou","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003291220","display_name":"Nuno A. Fonseca","orcid":"https://orcid.org/0000-0003-4832-578X"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nuno A Fonseca","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078103201","display_name":"Maria Keays","orcid":"https://orcid.org/0000-0003-2034-601X"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Maria Keays","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050349949","display_name":"Amy Tang","orcid":"https://orcid.org/0000-0003-0045-1234"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Y\u00a0Amy Tang","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052962307","display_name":"Elisabet Barrera","orcid":"https://orcid.org/0000-0002-7245-9692"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Elisabet Barrera","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044588779","display_name":"Wojciech Ba\u017cant","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Wojciech Bazant","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029555815","display_name":"Melissa L. Burke","orcid":"https://orcid.org/0000-0002-5571-8664"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Melissa Burke","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052274286","display_name":"Anja F\u00fcllgrabe","orcid":"https://orcid.org/0000-0002-8674-0039"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anja F\u00fcllgrabe","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004715333","display_name":"Alfonso Mu\u00f1oz-Pomer Fuentes","orcid":"https://orcid.org/0000-0002-4054-6214"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alfonso Mu\u00f1oz-Pomer Fuentes","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080245293","display_name":"Nancy George","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nancy George","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089888706","display_name":"Laura Huerta","orcid":"https://orcid.org/0000-0002-8748-599X"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Laura Huerta","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045682304","display_name":"Satu Koskinen","orcid":"https://orcid.org/0000-0003-0149-2070"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Satu Koskinen","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046977129","display_name":"Suhaib Mohammed","orcid":"https://orcid.org/0000-0003-1772-8690"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Suhaib Mohammed","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052164874","display_name":"Matthew Geniza","orcid":"https://orcid.org/0000-0003-4828-7891"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew Geniza","raw_affiliation_strings":["Oregon State University, Corvallis, USA"],"affiliations":[{"raw_affiliation_string":"Oregon State University, Corvallis, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086541807","display_name":"Justin Preece","orcid":"https://orcid.org/0000-0001-5406-4905"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin Preece","raw_affiliation_strings":["Oregon State University, Corvallis, USA"],"affiliations":[{"raw_affiliation_string":"Oregon State University, Corvallis, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049418039","display_name":"Pankaj Jaiswal","orcid":"https://orcid.org/0000-0002-1005-8383"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pankaj Jaiswal","raw_affiliation_strings":["Oregon State University, Corvallis, USA"],"affiliations":[{"raw_affiliation_string":"Oregon State University, Corvallis, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044964582","display_name":"Andrew F. Jarnuczak","orcid":"https://orcid.org/0000-0001-6368-3951"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew F Jarnuczak","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029601108","display_name":"Wolfgang Huber","orcid":"https://orcid.org/0000-0002-0474-2218"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Wolfgang Huber","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091002491","display_name":"Oliver Stegle","orcid":"https://orcid.org/0000-0002-8818-7193"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Oliver Stegle","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044603792","display_name":"Juan Antonio Vizca\u00edno","orcid":"https://orcid.org/0000-0002-3905-4335"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Juan Antonio Vizcaino","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081419327","display_name":"Alvis Br\u0101zma","orcid":"https://orcid.org/0000-0001-5988-7409"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alvis Brazma","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033315534","display_name":"Robert Petryszak","orcid":"https://orcid.org/0000-0001-6333-2182"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert Petryszak","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":22,"corresponding_author_ids":["https://openalex.org/A5027778199"],"corresponding_institution_ids":["https://openalex.org/I1303153112"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":23.6937,"has_fulltext":true,"cited_by_count":453,"citation_normalized_percentile":{"value":0.99746565,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"46","issue":"D1","first_page":"D246","last_page":"D251"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9751999974250793,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7895528078079224},{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.6390765905380249},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5860389471054077},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5699122548103333},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5257661938667297},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.5145804286003113},{"id":"https://openalex.org/keywords/human-protein-atlas","display_name":"Human Protein Atlas","score":0.4853917360305786},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.4617471992969513},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4327124357223511},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.427132785320282},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.38029247522354126},{"id":"https://openalex.org/keywords/protein-expression","display_name":"Protein expression","score":0.2828902006149292},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.233320415019989}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7895528078079224},{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.6390765905380249},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5860389471054077},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5699122548103333},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5257661938667297},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.5145804286003113},{"id":"https://openalex.org/C158163496","wikidata":"https://www.wikidata.org/wiki/Q5937310","display_name":"Human Protein Atlas","level":4,"score":0.4853917360305786},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.4617471992969513},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4327124357223511},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.427132785320282},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.38029247522354126},{"id":"https://openalex.org/C6856738","wikidata":"https://www.wikidata.org/wiki/Q331672","display_name":"Protein expression","level":3,"score":0.2828902006149292},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.233320415019989},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkx1158","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx1158","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D246/23162489/gkx1158.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:29165655","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29165655","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5753389","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkx1158","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkx1158","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx1158","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D246/23162489/gkx1158.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320273","display_name":"University of Cambridge","ror":"https://ror.org/013meh722"},{"id":"https://openalex.org/F4320320286","display_name":"University College London","ror":"https://ror.org/02jx3x895"},{"id":"https://openalex.org/F4320324787","display_name":"Peking University","ror":"https://ror.org/02v51f717"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2769591387.pdf","grobid_xml":"https://content.openalex.org/works/W2769591387.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1964904043","https://openalex.org/W1989277387","https://openalex.org/W2018838463","https://openalex.org/W2076154138","https://openalex.org/W2104224685","https://openalex.org/W2106780701","https://openalex.org/W2118258530","https://openalex.org/W2127589936","https://openalex.org/W2134526812","https://openalex.org/W2135581618","https://openalex.org/W2136170412","https://openalex.org/W2140729960","https://openalex.org/W2146749911","https://openalex.org/W2147018385","https://openalex.org/W2165446840","https://openalex.org/W2166719147","https://openalex.org/W2179282661","https://openalex.org/W2179438025","https://openalex.org/W2179575365","https://openalex.org/W2418044989","https://openalex.org/W2510334816","https://openalex.org/W2530086808","https://openalex.org/W2537132940","https://openalex.org/W2539260864","https://openalex.org/W2544360569","https://openalex.org/W2545591455","https://openalex.org/W2557530941","https://openalex.org/W2559722174","https://openalex.org/W2571859373","https://openalex.org/W2600267074","https://openalex.org/W4234586755","https://openalex.org/W4252232449"],"related_works":["https://openalex.org/W2468279273","https://openalex.org/W2354198838","https://openalex.org/W1989130879","https://openalex.org/W2103419012","https://openalex.org/W2988126442","https://openalex.org/W2011187995","https://openalex.org/W2314146950","https://openalex.org/W2582837249","https://openalex.org/W1971016193","https://openalex.org/W2164919137"],"abstract_inverted_index":{"Expression":[0,62,98,165],"Atlas":[1,63,166],"(http://www.ebi.ac.uk/gxa)":[2],"is":[3],"an":[4],"added":[5],"value":[6],"database":[7],"that":[8],"provides":[9],"information":[10],"about":[11],"gene":[12,178,186,192],"and":[13,19,33,43,50,56,88,108,161,171,181],"protein":[14],"expression":[15,111,193],"in":[16,119,143,188],"different":[17,39,71],"species":[18],"contexts,":[20],"such":[21],"as":[22,147],"tissue,":[23],"developmental":[24,117],"stage,":[25],"disease":[26],"or":[27,104,113,122,131,146,196],"cell":[28],"type.":[29],"The":[30],"available":[31,52,139],"public":[32],"controlled":[34],"access":[35],"data":[36,65,136,155],"sets":[37,156],"from":[38,66,75,78],"sources":[40],"are":[41,138],"curated":[42],"re-analysed":[44],"using":[45],"standardized,":[46],"open":[47],"source":[48],"pipelines":[49],"made":[51],"for":[53,140],"queries,":[54],"download":[55,142],"visualization.":[57],"As":[58],"of":[59,106,128,177],"August":[60],"2017,":[61],"holds":[64],"3,126":[67],"studies":[68,82],"across":[69,112,194],"33":[70],"species,":[72,115],"including":[73,83],"731":[74],"plants.":[76],"Data":[77],"large-scale":[79],"RNA":[80],"sequencing":[81],"Blueprint,":[84],"PCAWG,":[85],"ENCODE,":[86],"GTEx":[87],"HipSci":[89],"can":[90,101,157],"be":[91,159],"visualized":[92],"next":[93],"to":[94,151,184],"each":[95],"other.":[96],"In":[97,149],"Atlas,":[99],"users":[100],"query":[102],"genes":[103],"gene-sets":[105],"interest":[107],"explore":[109],"their":[110],"within":[114],"tissues,":[116],"stages":[118],"a":[120],"constitutive":[121,191],"differential":[123],"context,":[124],"representing":[125],"the":[126,152,164,174,182],"effects":[127],"diseases,":[129],"conditions":[130],"experimental":[132],"interventions.":[133],"All":[134],"processed":[135],"matrices":[137],"direct":[141],"tab-delimited":[144],"format":[145],"R-data.":[148],"addition":[150],"web":[153],"interface,":[154],"now":[158],"searched":[160],"downloaded":[162],"through":[163],"R":[167],"package.":[168],"Novel":[169],"features":[170],"visualizations":[172],"include":[173],"on-the-fly":[175],"analysis":[176],"set":[179],"overlaps":[180],"option":[183],"view":[185],"co-expression":[187],"experiments":[189],"investigating":[190],"tissues":[195],"other":[197],"conditions.":[198]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":36},{"year":2024,"cited_by_count":51},{"year":2023,"cited_by_count":39},{"year":2022,"cited_by_count":51},{"year":2021,"cited_by_count":60},{"year":2020,"cited_by_count":96},{"year":2019,"cited_by_count":81},{"year":2018,"cited_by_count":31},{"year":2017,"cited_by_count":2}],"updated_date":"2026-04-01T17:29:45.350535","created_date":"2025-10-10T00:00:00"}
