{"id":"https://openalex.org/W2767826728","doi":"https://doi.org/10.1093/nar/gkx1081","title":"The Encyclopedia of DNA elements (ENCODE): data portal update","display_name":"The Encyclopedia of DNA elements (ENCODE): data portal update","publication_year":2017,"publication_date":"2017-10-20","ids":{"openalex":"https://openalex.org/W2767826728","doi":"https://doi.org/10.1093/nar/gkx1081","mag":"2767826728","pmid":"https://pubmed.ncbi.nlm.nih.gov/29126249"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkx1081","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx1081","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D794/23162243/gkx1081.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/46/D1/D794/23162243/gkx1081.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111593857","display_name":"Carrie Davis","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carrie A Davis","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074536424","display_name":"Benjamin C. Hitz","orcid":"https://orcid.org/0000-0003-3361-3594"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin C Hitz","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"raw_orcid":"https://orcid.org/0000-0003-3361-3594","affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041151354","display_name":"Cricket A. Sloan","orcid":"https://orcid.org/0000-0002-0693-6999"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cricket A Sloan","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"raw_orcid":"https://orcid.org/0000-0002-0693-6999","affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067468389","display_name":"Esther T. Chan","orcid":"https://orcid.org/0000-0002-2406-2623"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Esther T Chan","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"raw_orcid":"https://orcid.org/0000-0002-2406-2623","affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004031300","display_name":"Jean M. Davidson","orcid":"https://orcid.org/0000-0001-5951-5955"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jean M Davidson","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"raw_orcid":"https://orcid.org/0000-0001-5951-5955","affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021119888","display_name":"Idan Gabdank","orcid":"https://orcid.org/0000-0001-5025-5886"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Idan Gabdank","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"raw_orcid":"https://orcid.org/0000-0001-5025-5886","affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053283314","display_name":"Jason A. Hilton","orcid":"https://orcid.org/0000-0002-1196-4871"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason A Hilton","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020535312","display_name":"Kriti Jain","orcid":"https://orcid.org/0000-0002-7824-9637"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kriti Jain","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013194640","display_name":"Ulugbek K. Baymuradov","orcid":"https://orcid.org/0000-0003-4454-1303"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ulugbek K Baymuradov","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077834874","display_name":"Aditi K. Narayanan","orcid":"https://orcid.org/0000-0003-0627-1859"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aditi K Narayanan","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Kathrina C Onate","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kathrina C Onate","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005767072","display_name":"Keenan Graham","orcid":"https://orcid.org/0000-0002-3327-6164"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Keenan Graham","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090930718","display_name":"Stuart R. Miyasato","orcid":"https://orcid.org/0000-0001-5250-8920"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stuart R Miyasato","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101980603","display_name":"Timothy R. Dreszer","orcid":"https://orcid.org/0000-0002-7328-1283"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Timothy R Dreszer","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"raw_orcid":"https://orcid.org/0000-0002-7328-1283","affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063673218","display_name":"J. Seth Strattan","orcid":"https://orcid.org/0000-0001-5094-282X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J\u00a0Seth Strattan","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"raw_orcid":"https://orcid.org/0000-0001-5094-282X","affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000062175","display_name":"Otto Jolanki","orcid":"https://orcid.org/0000-0001-8601-4849"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Otto Jolanki","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079783845","display_name":"Forrest Y. Tanaka","orcid":"https://orcid.org/0000-0002-8649-6611"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Forrest Y Tanaka","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"raw_orcid":"https://orcid.org/0000-0002-8649-6611","affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058567429","display_name":"J. Michael Cherry","orcid":"https://orcid.org/0000-0001-9163-5180"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"J\u00a0Michael Cherry","raw_affiliation_strings":["Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA"],"raw_orcid":"https://orcid.org/0000-0001-9163-5180","affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":18,"corresponding_author_ids":["https://openalex.org/A5058567429"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":65.611,"has_fulltext":false,"cited_by_count":1997,"citation_normalized_percentile":{"value":0.99962041,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"46","issue":"D1","first_page":"D794","last_page":"D801"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.8640110492706299},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.8637540936470032},{"id":"https://openalex.org/keywords/encyclopedia","display_name":"Encyclopedia","score":0.725235104560852},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5346108675003052},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5252679586410522},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.5055973529815674},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4452395439147949},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4366767108440399},{"id":"https://openalex.org/keywords/epigenome","display_name":"Epigenome","score":0.4252208471298218},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4215916097164154},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14654621481895447},{"id":"https://openalex.org/keywords/library-science","display_name":"Library science","score":0.11588013172149658},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09433260560035706}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.8640110492706299},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.8637540936470032},{"id":"https://openalex.org/C148863701","wikidata":"https://www.wikidata.org/wiki/Q5292","display_name":"Encyclopedia","level":2,"score":0.725235104560852},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5346108675003052},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5252679586410522},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.5055973529815674},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4452395439147949},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4366767108440399},{"id":"https://openalex.org/C117717151","wikidata":"https://www.wikidata.org/wiki/Q3589155","display_name":"Epigenome","level":5,"score":0.4252208471298218},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4215916097164154},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14654621481895447},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.11588013172149658},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09433260560035706},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003626","descriptor_name":"Data Display","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003626","descriptor_name":"Data Display","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003626","descriptor_name":"Data Display","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040461","descriptor_name":"Gene Components","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040461","descriptor_name":"Gene Components","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040461","descriptor_name":"Gene Components","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066264","descriptor_name":"Datasets as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkx1081","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx1081","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D794/23162243/gkx1081.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:29126249","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29126249","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5753278","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5753278","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkx1081","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx1081","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D794/23162243/gkx1081.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5299999713897705,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1592986776","https://openalex.org/W1644197353","https://openalex.org/W2039176012","https://openalex.org/W2076154138","https://openalex.org/W2084191969","https://openalex.org/W2096465161","https://openalex.org/W2102304447","https://openalex.org/W2105114815","https://openalex.org/W2126958666","https://openalex.org/W2148966035","https://openalex.org/W2160379721","https://openalex.org/W2231865019","https://openalex.org/W2259938310","https://openalex.org/W2296810948","https://openalex.org/W2335932981","https://openalex.org/W2553822231","https://openalex.org/W2584394140","https://openalex.org/W2950139272","https://openalex.org/W4210659358"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2335932981","https://openalex.org/W2062427795","https://openalex.org/W3046129497","https://openalex.org/W1533329019","https://openalex.org/W2360553097","https://openalex.org/W2153919418","https://openalex.org/W2354642172","https://openalex.org/W2076264610","https://openalex.org/W2767826728"],"abstract_inverted_index":{"The":[0,174],"Encyclopedia":[1],"of":[2,71,99,162],"DNA":[3],"Elements":[4],"(ENCODE)":[5],"Data":[6],"Coordinating":[7],"Center":[8],"has":[9,111],"developed":[10],"the":[11,18,21,27,34,42,59,69,72,96,103,109,150],"ENCODE":[12,28,107,170],"Portal":[13,104,110,151,175],"database":[14],"and":[15,23,41,55,74,87,95,140,147,172,182,186],"website":[16],"as":[17],"source":[19],"for":[20],"data":[22,43,73,133],"metadata":[24,66,143,185],"generated":[25],"by":[26],"Consortium.":[29],"Two":[30],"principles":[31],"have":[32],"motivated":[33],"design.":[35],"First,":[36],"experimental":[37],"protocols,":[38],"analytical":[39],"procedures":[40],"themselves":[44],"should":[45,62],"be":[46,188],"made":[47],"publicly":[48],"accessible":[49],"through":[50],"a":[51],"coherent,":[52],"web-based":[53],"search":[54],"download":[56],"interface.":[57],"Second,":[58],"same":[60],"interface":[61],"serve":[63],"carefully":[64],"curated":[65],"that":[67],"record":[68],"provenance":[70],"justify":[75],"its":[76,82],"interpretation":[77],"in":[78,85,88],"biological":[79],"terms.":[80],"Since":[81],"initial":[83],"release":[84],"2013":[86],"response":[89],"to":[90,105,115,144,155],"recommendations":[91],"from":[92,129,134,157],"consortium":[93],"members":[94],"wider":[97],"community":[98],"scientists":[100],"who":[101],"use":[102],"access":[106],"data,":[108],"been":[112],"regularly":[113],"updated":[114],"better":[116],"reflect":[117],"these":[118,125],"design":[119],"principles.":[120],"Here":[121],"we":[122],"report":[123],"on":[124],"updates,":[126],"including":[127,160],"results":[128],"new":[130,137],"experiments,":[131],"uniformly-processed":[132],"other":[135],"projects,":[136],"visualization":[138],"tools":[139],"more":[141],"comprehensive":[142],"describe":[145],"experiments":[146],"analyses.":[148],"Additionally,":[149],"is":[152],"now":[153,176],"home":[154],"meta(data)":[156],"related":[158],"projects":[159],"Genomics":[161],"Gene":[163],"Regulation,":[164],"Roadmap":[165],"Epigenome":[166],"Project,":[167],"Model":[168],"organism":[169],"(modENCODE)":[171],"modERN.":[173],"makes":[177],"available":[178],"over":[179],"13000":[180],"datasets":[181],"their":[183],"accompanying":[184],"can":[187],"accessed":[189],"at:":[190],"https://www.encodeproject.org/.":[191]},"counts_by_year":[{"year":2026,"cited_by_count":29},{"year":2025,"cited_by_count":91},{"year":2024,"cited_by_count":169},{"year":2023,"cited_by_count":262},{"year":2022,"cited_by_count":428},{"year":2021,"cited_by_count":471},{"year":2020,"cited_by_count":357},{"year":2019,"cited_by_count":163},{"year":2018,"cited_by_count":21},{"year":2017,"cited_by_count":3}],"updated_date":"2026-06-05T09:01:59.212387","created_date":"2025-10-10T00:00:00"}
