{"id":"https://openalex.org/W2767731367","doi":"https://doi.org/10.1093/nar/gkx1080","title":"MeT-DB V2.0: elucidating context-specific functions of N6-methyl-adenosine methyltranscriptome","display_name":"MeT-DB V2.0: elucidating context-specific functions of N6-methyl-adenosine methyltranscriptome","publication_year":2017,"publication_date":"2017-11-06","ids":{"openalex":"https://openalex.org/W2767731367","doi":"https://doi.org/10.1093/nar/gkx1080","mag":"2767731367","pmid":"https://pubmed.ncbi.nlm.nih.gov/29126312"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkx1080","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx1080","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D281/23162239/gkx1080.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/46/D1/D281/23162239/gkx1080.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113566766","display_name":"Hui Liu","orcid":"https://orcid.org/0000-0001-8845-4813"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Liu","raw_affiliation_strings":["School of Information and Control Engineering, China University of Mining and Technology, Xuzhou, Jiangsu 221116, China"],"affiliations":[{"raw_affiliation_string":"School of Information and Control Engineering, China University of Mining and Technology, Xuzhou, Jiangsu 221116, China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101919706","display_name":"Huaizhi Wang","orcid":"https://orcid.org/0000-0002-5421-5176"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huaizhi Wang","raw_affiliation_strings":["School of Information and Control Engineering, China University of Mining and Technology, Xuzhou, Jiangsu 221116, China"],"affiliations":[{"raw_affiliation_string":"School of Information and Control Engineering, China University of Mining and Technology, Xuzhou, Jiangsu 221116, China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103098229","display_name":"Zhen Wei","orcid":"https://orcid.org/0000-0002-5148-7651"},"institutions":[{"id":"https://openalex.org/I69356397","display_name":"Xi\u2019an Jiaotong-Liverpool University","ror":"https://ror.org/03zmrmn05","country_code":"CN","type":"education","lineage":["https://openalex.org/I69356397"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhen Wei","raw_affiliation_strings":["Department of Biological Sciences, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123, China","Department of Biological Sciences, Xi\u2019an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123, China"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123, China","institution_ids":["https://openalex.org/I69356397"]},{"raw_affiliation_string":"Department of Biological Sciences, Xi\u2019an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123, China","institution_ids":["https://openalex.org/I69356397"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086402061","display_name":"Songyao Zhang","orcid":"https://orcid.org/0000-0002-5406-3643"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Songyao Zhang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, the University of Texas at San Antonio, San Antonio, TX 78249, USA","Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi'an 710072, China","Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi\u2019an 710072, China"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, the University of Texas at San Antonio, San Antonio, TX 78249, USA","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi'an 710072, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi\u2019an 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101953805","display_name":"Gang Hua","orcid":"https://orcid.org/0000-0003-2174-3607"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Gang Hua","raw_affiliation_strings":["School of Information and Control Engineering, China University of Mining and Technology, Xuzhou, Jiangsu 221116, China"],"affiliations":[{"raw_affiliation_string":"School of Information and Control Engineering, China University of Mining and Technology, Xuzhou, Jiangsu 221116, China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061712236","display_name":"Shao\u2010Wu Zhang","orcid":"https://orcid.org/0000-0003-1305-7447"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Shao-Wu Zhang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, the University of Texas at San Antonio, San Antonio, TX 78249, USA","Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi'an 710072, China","Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi\u2019an 710072, China"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, the University of Texas at San Antonio, San Antonio, TX 78249, USA","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi'an 710072, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi\u2019an 710072, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100351875","display_name":"Lin Zhang","orcid":"https://orcid.org/0000-0002-7404-5231"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lin Zhang","raw_affiliation_strings":["School of Information and Control Engineering, China University of Mining and Technology, Xuzhou, Jiangsu 221116, China"],"affiliations":[{"raw_affiliation_string":"School of Information and Control Engineering, China University of Mining and Technology, Xuzhou, Jiangsu 221116, China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010896860","display_name":"Shou\u2010Jiang Gao","orcid":"https://orcid.org/0000-0001-6194-1742"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shou-Jiang Gao","raw_affiliation_strings":["Department of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062986831","display_name":"Jia Meng","orcid":"https://orcid.org/0000-0003-3455-205X"},"institutions":[{"id":"https://openalex.org/I69356397","display_name":"Xi\u2019an Jiaotong-Liverpool University","ror":"https://ror.org/03zmrmn05","country_code":"CN","type":"education","lineage":["https://openalex.org/I69356397"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jia Meng","raw_affiliation_strings":["Department of Biological Sciences, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123, China","Department of Biological Sciences, Xi\u2019an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123, China"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123, China","institution_ids":["https://openalex.org/I69356397"]},{"raw_affiliation_string":"Department of Biological Sciences, Xi\u2019an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123, China","institution_ids":["https://openalex.org/I69356397"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036210249","display_name":"Xing Chen","orcid":"https://orcid.org/0000-0001-9028-5342"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xing Chen","raw_affiliation_strings":["School of Information and Control Engineering, China University of Mining and Technology, Xuzhou, Jiangsu 221116, China"],"affiliations":[{"raw_affiliation_string":"School of Information and Control Engineering, China University of Mining and Technology, Xuzhou, Jiangsu 221116, China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068887242","display_name":"Yufei Huang","orcid":"https://orcid.org/0000-0001-6268-5357"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas Health Science Center at San Antonio","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966"]},{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yufei Huang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, the University of Texas at San Antonio, San Antonio, TX 78249, USA","Department of Epidemiology and Biostatistics, University of Texas Health at San Antonio, San Antonio, TX 78229, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, the University of Texas at San Antonio, San Antonio, TX 78249, USA","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Department of Epidemiology and Biostatistics, University of Texas Health at San Antonio, San Antonio, TX 78229, USA","institution_ids":["https://openalex.org/I45438204","https://openalex.org/I165951966"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5036210249","https://openalex.org/A5062986831","https://openalex.org/A5068887242"],"corresponding_institution_ids":["https://openalex.org/I165951966","https://openalex.org/I25757504","https://openalex.org/I45438204","https://openalex.org/I69356397"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":6.8284,"has_fulltext":false,"cited_by_count":122,"citation_normalized_percentile":{"value":0.97739341,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"46","issue":"D1","first_page":"D281","last_page":"D287"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13157","display_name":"Cancer-related gene regulation","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7313350439071655},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.729641318321228},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.5800784230232239},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.5647287368774414},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4785464406013489},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4655732810497284},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.4459470510482788},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3865065574645996},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3334415555000305},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27294921875},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2491065263748169},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.2489374577999115},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.19065222144126892},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.16373848915100098},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.15047729015350342}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7313350439071655},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.729641318321228},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.5800784230232239},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.5647287368774414},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4785464406013489},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4655732810497284},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.4459470510482788},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3865065574645996},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3334415555000305},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27294921875},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2491065263748169},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2489374577999115},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.19065222144126892},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.16373848915100098},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.15047729015350342},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":false},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":false},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":false},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000031","qualifier_name":"analogs & derivatives","is_major_topic":false},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000241","descriptor_name":"Adenosine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008745","descriptor_name":"Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008745","descriptor_name":"Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008745","descriptor_name":"Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008745","descriptor_name":"Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkx1080","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx1080","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D281/23162239/gkx1080.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:29126312","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29126312","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:4668273","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5753212","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5753212","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkx1080","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkx1080","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx1080","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D281/23162239/gkx1080.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310677","display_name":"University of Texas at San Antonio","ror":"https://ror.org/01kd65564"},{"id":"https://openalex.org/F4320323154","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2767731367.pdf","grobid_xml":"https://content.openalex.org/works/W2767731367.grobid-xml"},"referenced_works_count":70,"referenced_works":["https://openalex.org/W1885991053","https://openalex.org/W1933156045","https://openalex.org/W1941339056","https://openalex.org/W1947267113","https://openalex.org/W1981629946","https://openalex.org/W1986988560","https://openalex.org/W1991807334","https://openalex.org/W1998402534","https://openalex.org/W2002458471","https://openalex.org/W2007429249","https://openalex.org/W2009308529","https://openalex.org/W2011131953","https://openalex.org/W2015217788","https://openalex.org/W2015696149","https://openalex.org/W2022770379","https://openalex.org/W2028978761","https://openalex.org/W2035905956","https://openalex.org/W2039725641","https://openalex.org/W2041328373","https://openalex.org/W2041509376","https://openalex.org/W2062821957","https://openalex.org/W2065847836","https://openalex.org/W2071930821","https://openalex.org/W2078964320","https://openalex.org/W2083381199","https://openalex.org/W2091235283","https://openalex.org/W2091724447","https://openalex.org/W2102872651","https://openalex.org/W2116220051","https://openalex.org/W2117977572","https://openalex.org/W2127640118","https://openalex.org/W2134526812","https://openalex.org/W2138773756","https://openalex.org/W2140729960","https://openalex.org/W2143451174","https://openalex.org/W2157009395","https://openalex.org/W2165547003","https://openalex.org/W2166153887","https://openalex.org/W2167155938","https://openalex.org/W2174734928","https://openalex.org/W2177605184","https://openalex.org/W2213040759","https://openalex.org/W2327216023","https://openalex.org/W2335010255","https://openalex.org/W2342299314","https://openalex.org/W2345013090","https://openalex.org/W2403990263","https://openalex.org/W2438154367","https://openalex.org/W2462449071","https://openalex.org/W2466739815","https://openalex.org/W2532091902","https://openalex.org/W2538543247","https://openalex.org/W2558411436","https://openalex.org/W2558715006","https://openalex.org/W2558981096","https://openalex.org/W2559028527","https://openalex.org/W2559344646","https://openalex.org/W2562211106","https://openalex.org/W2563912688","https://openalex.org/W2566386603","https://openalex.org/W2586247640","https://openalex.org/W2592692332","https://openalex.org/W2592988313","https://openalex.org/W2604499950","https://openalex.org/W2604637348","https://openalex.org/W2752930292","https://openalex.org/W2786478597","https://openalex.org/W2803154276","https://openalex.org/W2915489297","https://openalex.org/W2946217053"],"related_works":["https://openalex.org/W2399513595","https://openalex.org/W4388386498","https://openalex.org/W2168783124","https://openalex.org/W2126958666","https://openalex.org/W2028462563","https://openalex.org/W2982720988","https://openalex.org/W3150324899","https://openalex.org/W4392059188","https://openalex.org/W4388725868","https://openalex.org/W2104762330"],"abstract_inverted_index":{"Methyltranscriptome":[0],"is":[1,30,110,147,226],"an":[2,85],"exciting":[3],"new":[4,152],"area":[5],"that":[6],"studies":[7],"the":[8,20,49,92,102,190,198],"mechanisms":[9],"and":[10,23,65,131,160,162,176,183,188,230],"functions":[11,36],"of":[12,25,72,107,156,167,203],"methylation":[13,74],"in":[14,47,75,91,127],"transcripts.":[15],"A":[16],"knowledge":[17],"base":[18],"with":[19,150,164],"systematic":[21],"collection":[22],"curation":[24],"context":[26],"specific":[27],"transcriptome-wide":[28],"methylations":[29],"critical":[31],"for":[32,40,88,138,154,197,207,218],"elucidating":[33,117],"their":[34],"biological":[35],"as":[37,39],"well":[38],"developing":[41],"bioinformatics":[42],"tools.":[43],"Since":[44],"its":[45],"inception":[46],"2014,":[48],"Met-DB":[50,100,121,172,211,223],"(Liu,":[51],"H.,":[52],"Flores,":[53],"M.A.,":[54],"Meng,":[55],"J.,":[56],"Zhang,":[57],"L.,":[58],"Zhao,":[59],"X.,":[60],"Rao,":[61],"M.K.,":[62],"Chen,":[63],"Y.":[64,67],"Huang,":[66],"(2015)":[68],"MeT-DB:":[69],"a":[70,124,151,201,215],"database":[71,153,225],"transcriptome":[73],"mammalian":[76],"cells.":[77],"Nucleic":[78],"Acids":[79],"Res.,":[80],"43,":[81],"D197-D203),":[82],"has":[83,123],"become":[84],"important":[86],"resource":[87,217],"methyltranscriptome,":[89],"especially":[90],"N6-methyl-adenosine":[93],"(m6A)":[94],"research":[95],"community.":[96],"Here,":[97],"we":[98],"report":[99],"v2.0,":[101],"significantly":[103],"improved":[104],"second":[105],"version":[106],"Met-DB,":[108],"which":[109],"entirely":[111],"redesigned":[112,171],"to":[113,186],"focus":[114],"more":[115,165,180],"on":[116],"context-specific":[118,128],"m6A":[119,129,157,209,219],"functions.":[120,210],"v2.0":[122,173,195],"major":[125],"increase":[126],"peaks":[130],"single-base":[132],"sites":[133],"predicted":[134],"from":[135,141],"185":[136],"samples":[137],"7":[139],"species":[140],"26":[142],"independent":[143],"studies.":[144],"Moreover,":[145],"it":[146],"also":[148],"integrated":[149],"targets":[155],"readers,":[158],"erasers":[159],"writers":[161],"expanded":[163],"collections":[166],"functional":[168],"data.":[169,191],"The":[170,222],"web":[174],"interface":[175],"genome":[177],"browser":[178],"provide":[179],"friendly,":[181],"powerful,":[182],"informative":[184],"ways":[185],"query":[187],"visualize":[189],"More":[192],"importantly,":[193],"MeT-DB":[194],"offers":[196],"first":[199],"time":[200],"series":[202],"tools":[204],"specifically":[205],"designed":[206],"understanding":[208],"V2.0":[212,224],"will":[213],"be":[214],"valuable":[216],"methyltranscriptome":[220],"research.":[221],"available":[227],"at":[228],"http://compgenomics.utsa.edu/MeTDB/":[229],"http://www.xjtlu.edu.cn/metdb2.":[231]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":26},{"year":2020,"cited_by_count":32},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":12}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
