{"id":"https://openalex.org/W2767914218","doi":"https://doi.org/10.1093/nar/gkx1064","title":"WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research","display_name":"WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research","publication_year":2017,"publication_date":"2017-10-25","ids":{"openalex":"https://openalex.org/W2767914218","doi":"https://doi.org/10.1093/nar/gkx1064","mag":"2767914218","pmid":"https://pubmed.ncbi.nlm.nih.gov/29136241"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkx1064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx1064","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D661/23162184/gkx1064.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/46/D1/D661/23162184/gkx1064.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071903823","display_name":"Denise Slenter","orcid":"https://orcid.org/0000-0001-8449-1318"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Denise N Slenter","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062841937","display_name":"Martina Kutmon","orcid":null},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Martina Kutmon","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, 6229 ER Maastricht, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0002-7699-8191","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063972221","display_name":"Kristina Hanspers","orcid":"https://orcid.org/0000-0001-5410-599X"},"institutions":[{"id":"https://openalex.org/I1321430492","display_name":"Gladstone Institutes","ror":"https://ror.org/038321296","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321430492"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kristina Hanspers","raw_affiliation_strings":["Gladstone Institutes, San Francisco, California, CA 94158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gladstone Institutes, San Francisco, California, CA 94158, USA","institution_ids":["https://openalex.org/I1321430492"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064769212","display_name":"Anders Riutta","orcid":"https://orcid.org/0000-0002-4693-0591"},"institutions":[{"id":"https://openalex.org/I1321430492","display_name":"Gladstone Institutes","ror":"https://ror.org/038321296","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321430492"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anders Riutta","raw_affiliation_strings":["Gladstone Institutes, San Francisco, California, CA 94158, USA"],"raw_orcid":"https://orcid.org/0000-0002-4693-0591","affiliations":[{"raw_affiliation_string":"Gladstone Institutes, San Francisco, California, CA 94158, USA","institution_ids":["https://openalex.org/I1321430492"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050916185","display_name":"Jacob Windsor","orcid":"https://orcid.org/0000-0002-0249-7757"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Jacob Windsor","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074097147","display_name":"Nuno Nunes","orcid":"https://orcid.org/0000-0002-2498-0643"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Nuno Nunes","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040186093","display_name":"Jonathan M\u00e9lius","orcid":"https://orcid.org/0000-0001-8624-2972"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Jonathan M\u00e9lius","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068612501","display_name":"Elisa Cirillo","orcid":"https://orcid.org/0000-0002-0241-7833"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Elisa Cirillo","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0002-0241-7833","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088503440","display_name":"Susan L. Coort","orcid":"https://orcid.org/0000-0003-1224-9690"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Susan L Coort","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0003-1224-9690","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059247283","display_name":"Daniela Digles","orcid":"https://orcid.org/0000-0001-5934-3559"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Daniela Digles","raw_affiliation_strings":["University of Vienna, Department of Pharmaceutical Chemistry, 1090 Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Vienna, Department of Pharmaceutical Chemistry, 1090 Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061353760","display_name":"Friederike Ehrhart","orcid":"https://orcid.org/0000-0002-7770-620X"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Friederike Ehrhart","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042735384","display_name":"Pieter Giesbertz","orcid":"https://orcid.org/0000-0001-7461-8602"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Pieter Giesbertz","raw_affiliation_strings":["Chair of Nutritional Physiology, Technische Universit\u00e4t M\u00fcnchen, 85350 Freising, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair of Nutritional Physiology, Technische Universit\u00e4t M\u00fcnchen, 85350 Freising, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050104635","display_name":"Marianthi Kalafati","orcid":null},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Marianthi Kalafati","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, 6229 ER Maastricht, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046933371","display_name":"Marvin Martens","orcid":"https://orcid.org/0000-0003-2230-0840"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Marvin Martens","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007578966","display_name":"Ryan A. Miller","orcid":"https://orcid.org/0000-0003-3477-7443"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Ryan Miller","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0003-3477-7443","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034175804","display_name":"Kozo Nishida","orcid":"https://orcid.org/0000-0001-8501-7319"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kozo Nishida","raw_affiliation_strings":["Laboratory for Biochemical Simulation, RIKEN Quantitative Biology Center, Suita, Osaka 565-0874, Japan"],"raw_orcid":"https://orcid.org/0000-0001-8501-7319","affiliations":[{"raw_affiliation_string":"Laboratory for Biochemical Simulation, RIKEN Quantitative Biology Center, Suita, Osaka 565-0874, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068366960","display_name":"Linda Rieswijk","orcid":"https://orcid.org/0000-0002-6106-1347"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Linda Rieswijk","raw_affiliation_strings":["Division of Environmental Health Sciences, School of Public Health, University of California, Berkeley, CA 94720, USA"],"raw_orcid":"https://orcid.org/0000-0002-6106-1347","affiliations":[{"raw_affiliation_string":"Division of Environmental Health Sciences, School of Public Health, University of California, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048705669","display_name":"Andra Waagmeester","orcid":"https://orcid.org/0000-0001-9773-4008"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]},{"id":"https://openalex.org/I4210135156","display_name":"Terumo (Belgium)","ror":"https://ror.org/043vk3t22","country_code":"BE","type":"company","lineage":["https://openalex.org/I4210119124","https://openalex.org/I4210135156"]}],"countries":["BE","NL"],"is_corresponding":false,"raw_author_name":"Andra Waagmeester","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","Micelio, Antwerp, Belgium"],"raw_orcid":"https://orcid.org/0000-0001-9773-4008","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Micelio, Antwerp, Belgium","institution_ids":["https://openalex.org/I4210135156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045552083","display_name":"Lars Eijssen","orcid":"https://orcid.org/0000-0002-6473-2839"},"institutions":[{"id":"https://openalex.org/I2800191616","display_name":"Maastricht University Medical Centre","ror":"https://ror.org/02d9ce178","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800191616"]},{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Lars M T Eijssen","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","School for Mental Health and Neuroscience, Department of Psychiatry and Neuropsychology, Maastricht University Medical Centre, 6229 ER Maastricht, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"School for Mental Health and Neuroscience, Department of Psychiatry and Neuropsychology, Maastricht University Medical Centre, 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I2800191616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075750072","display_name":"Chris T. Evelo","orcid":"https://orcid.org/0000-0002-5301-3142"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Chris T Evelo","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, 6229 ER Maastricht, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]},{"raw_affiliation_string":"Maastricht Centre for Systems Biology (MaCSBio), Maastricht University, 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070456387","display_name":"Alexander R. Pico","orcid":"https://orcid.org/0000-0001-5706-2163"},"institutions":[{"id":"https://openalex.org/I1321430492","display_name":"Gladstone Institutes","ror":"https://ror.org/038321296","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1321430492"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander R Pico","raw_affiliation_strings":["Gladstone Institutes, San Francisco, California, CA 94158, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Gladstone Institutes, San Francisco, California, CA 94158, USA","institution_ids":["https://openalex.org/I1321430492"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060194743","display_name":"Egon Willighagen","orcid":"https://orcid.org/0000-0001-7542-0286"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Egon L Willighagen","raw_affiliation_strings":["Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0001-7542-0286","affiliations":[{"raw_affiliation_string":"Department of Bioinformatics - BiGCaT, NUTRIM, Maastricht University, 6229 ER Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":22,"corresponding_author_ids":["https://openalex.org/A5060194743"],"corresponding_institution_ids":["https://openalex.org/I34352273"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":38.2425,"has_fulltext":false,"cited_by_count":998,"citation_normalized_percentile":{"value":0.99889988,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"46","issue":"D1","first_page":"D661","last_page":"D667"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7271294593811035},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.7162224650382996},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.5792098045349121},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.5552374124526978},{"id":"https://openalex.org/keywords/bridging","display_name":"Bridging (networking)","score":0.533912718296051},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.503863513469696},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4791773557662964},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.43447983264923096},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4214697480201721},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4119192063808441},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3970102369785309},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3613053560256958},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2794976830482483}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7271294593811035},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.7162224650382996},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.5792098045349121},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.5552374124526978},{"id":"https://openalex.org/C174348530","wikidata":"https://www.wikidata.org/wiki/Q188635","display_name":"Bridging (networking)","level":2,"score":0.533912718296051},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.503863513469696},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4791773557662964},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.43447983264923096},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4214697480201721},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4119192063808441},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3970102369785309},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3613053560256958},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2794976830482483},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkx1064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx1064","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D661/23162184/gkx1064.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:29136241","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29136241","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:cris.maastrichtuniversity.nl:openaire/f373860f-e5b5-41e6-b918-fe78177b38c2","is_oa":true,"landing_page_url":"https://cris.maastrichtuniversity.nl/en/publications/f373860f-e5b5-41e6-b918-fe78177b38c2","pdf_url":null,"source":{"id":"https://openalex.org/S4306402616","display_name":"Research Publications (Maastricht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I34352273","host_organization_name":"Maastricht University","host_organization_lineage":["https://openalex.org/I34352273"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Slenter, D N, Kutmon, M, Hanspers, K, Riutta, A, Windsor, J, Nunes, N, M\u00e9lius, J, Cirillo, E, Coort, S L, Digles, D, Ehrhart, F, Giesbertz, P, Kalafati, M, Martens, M, Miller, R, Nishida, K, Rieswijk, L, Waagmeester, A, Eijssen, L M T, Evelo, C T, Pico, A R & Willighagen, E L 2018, 'WikiPathways : a multifaceted pathway database bridging metabolomics to other omics research', Nucleic Acids Research, vol. 46, no. D1, pp. D661-D667. https://doi.org/10.1093/nar/gkx1064","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:info:fedora/oai:univie.ac.at:o:1067915","is_oa":true,"landing_page_url":"https://phaidra.univie.ac.at/o:1067915","pdf_url":null,"source":{"id":"https://openalex.org/S4306401993","display_name":"Phaidra (Universit\u00e4t Wien)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I129774422","host_organization_name":"University of Vienna","host_organization_lineage":["https://openalex.org/I129774422"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN:0305-1048","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4668329","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5753270","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkx1064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx1064","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D661/23162184/gkx1064.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2767914218.pdf","grobid_xml":"https://content.openalex.org/works/W2767914218.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1935434993","https://openalex.org/W1986088036","https://openalex.org/W1989277387","https://openalex.org/W1999758530","https://openalex.org/W2010502047","https://openalex.org/W2063028213","https://openalex.org/W2069928158","https://openalex.org/W2084292968","https://openalex.org/W2114688451","https://openalex.org/W2116687544","https://openalex.org/W2120680184","https://openalex.org/W2123152121","https://openalex.org/W2126997165","https://openalex.org/W2138862823","https://openalex.org/W2150420891","https://openalex.org/W2151120337","https://openalex.org/W2155083835","https://openalex.org/W2160591663","https://openalex.org/W2164298117","https://openalex.org/W2214793050","https://openalex.org/W2240002743","https://openalex.org/W2267633033","https://openalex.org/W2302501749","https://openalex.org/W2396056682","https://openalex.org/W2418056440","https://openalex.org/W2464278521","https://openalex.org/W2486330282","https://openalex.org/W2512737207","https://openalex.org/W2559588208","https://openalex.org/W2566602058","https://openalex.org/W2582455098","https://openalex.org/W2596319736","https://openalex.org/W2600124251","https://openalex.org/W2731260319","https://openalex.org/W2752510929","https://openalex.org/W2773787581"],"related_works":["https://openalex.org/W2169425537","https://openalex.org/W2169589518","https://openalex.org/W2086443788","https://openalex.org/W2762474792","https://openalex.org/W2111303602","https://openalex.org/W2772431536","https://openalex.org/W2951897737","https://openalex.org/W2891678595","https://openalex.org/W2097106271","https://openalex.org/W2124450377"],"abstract_inverted_index":{"WikiPathways":[0,27,53,65],"(wikipathways.org)":[1],"captures":[2],"the":[3,46,52,74,95,118,121,132,151,163,166],"collective":[4],"knowledge":[5,167,191],"represented":[6],"in":[7,14,41,138,169],"biological":[8],"pathways.":[9],"By":[10],"providing":[11,110],"a":[12,15,66,129],"database":[13,107],"curated,":[16],"machine":[17],"readable":[18],"way,":[19],"omics":[20,174],"data":[21,37],"analysis":[22],"and":[23,28,48,59,68,80,99,109,124,150,156,172,186,198],"visualization":[24],"is":[25,60],"enabled.":[26],"other":[29],"pathway":[30,70,190],"databases":[31],"are":[32],"used":[33],"to":[34,45,161,183,195],"analyze":[35],"experimental":[36,173],"by":[38,102],"research":[39,199],"groups":[40],"many":[42,83],"fields.":[43],"Due":[44],"open":[47],"collaborative":[49],"nature":[50],"of":[51,97,120,131,134,146,159,165],"platform,":[54],"our":[55,147],"content":[56],"keeps":[57],"growing":[58],"getting":[61],"more":[62,111,181,192],"accurate,":[63],"making":[64],"reliable":[67],"rich":[69],"database.":[71],"Previously,":[72],"however,":[73],"focus":[75],"was":[76],"primarily":[77],"on":[78,93],"genes":[79],"proteins,":[81],"leaving":[82],"metabolites":[84,105],"with":[85,106],"only":[86],"limited":[87],"annotation.":[88],"Recent":[89],"curation":[90,125],"efforts":[91],"focused":[92],"improving":[94],"annotation":[96,158],"metabolism":[98],"metabolic":[100],"pathways":[101,171],"associating":[103],"unmapped":[104],"identifiers":[108],"detailed":[112],"interaction":[113],"knowledge.":[114],"Here,":[115],"we":[116,141],"report":[117],"outcomes":[119],"continued":[122],"growth":[123],"efforts,":[126],"such":[127],"as":[128],"doubling":[130],"number":[133],"annotated":[135],"metabolite":[136,184],"nodes":[137],"WikiPathways.":[139],"Furthermore,":[140],"introduce":[142],"an":[143],"OpenAPI":[144],"documentation":[145],"web":[148],"services":[149],"FAIR":[152],"(Findable,":[153],"Accessible,":[154],"Interoperable":[155],"Reusable)":[157],"resources":[160],"increase":[162],"interoperability":[164],"encoded":[168],"these":[170],"data.":[175],"New":[176],"search":[177],"options,":[178],"monthly":[179],"downloads,":[180],"links":[182],"databases,":[185],"new":[187],"portals":[188],"make":[189],"effortlessly":[193],"accessible":[194],"individual":[196],"researchers":[197],"communities.":[200]},"counts_by_year":[{"year":2026,"cited_by_count":14},{"year":2025,"cited_by_count":56},{"year":2024,"cited_by_count":108},{"year":2023,"cited_by_count":114},{"year":2022,"cited_by_count":134},{"year":2021,"cited_by_count":228},{"year":2020,"cited_by_count":192},{"year":2019,"cited_by_count":100},{"year":2018,"cited_by_count":47},{"year":2017,"cited_by_count":2}],"updated_date":"2026-05-13T08:25:38.343686","created_date":"2025-10-10T00:00:00"}
