{"id":"https://openalex.org/W2766295385","doi":"https://doi.org/10.1093/nar/gkx1061","title":"PAMDB: a comprehensive Pseudomonas aeruginosa metabolome database","display_name":"PAMDB: a comprehensive Pseudomonas aeruginosa metabolome database","publication_year":2017,"publication_date":"2017-10-19","ids":{"openalex":"https://openalex.org/W2766295385","doi":"https://doi.org/10.1093/nar/gkx1061","mag":"2766295385","pmid":"https://pubmed.ncbi.nlm.nih.gov/29106626"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkx1061","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx1061","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D575/23162169/gkx1061.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/46/D1/D575/23162169/gkx1061.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010668315","display_name":"Weiliang Huang","orcid":"https://orcid.org/0000-0002-9608-2172"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Weiliang Huang","raw_affiliation_strings":["Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, MD 21209, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, MD 21209, USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043646087","display_name":"Luke K. Brewer","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luke K Brewer","raw_affiliation_strings":["Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, MD 21209, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, MD 21209, USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015749452","display_name":"Jace W. Jones","orcid":"https://orcid.org/0000-0003-0460-0380"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jace W Jones","raw_affiliation_strings":["Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, MD 21209, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, MD 21209, USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084844779","display_name":"Angela T. Nguyen","orcid":"https://orcid.org/0009-0008-8841-4414"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Angela T Nguyen","raw_affiliation_strings":["Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, MD 21209, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, MD 21209, USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012388687","display_name":"Ana Marcu","orcid":"https://orcid.org/0000-0003-0808-8097"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ana Marcu","raw_affiliation_strings":["Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003573061","display_name":"David S. Wishart","orcid":"https://orcid.org/0000-0002-3207-2434"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"David S Wishart","raw_affiliation_strings":["Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009719245","display_name":"Amanda G. Oglesby","orcid":"https://orcid.org/0000-0003-4440-3840"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Amanda G Oglesby-Sherrouse","raw_affiliation_strings":["Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, MD 21209, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, MD 21209, USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069095946","display_name":"Maureen A. Kane","orcid":"https://orcid.org/0000-0002-5525-9170"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Maureen A Kane","raw_affiliation_strings":["Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, MD 21209, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, MD 21209, USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036275858","display_name":"Angela Wilks","orcid":"https://orcid.org/0000-0002-0008-7690"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Angela Wilks","raw_affiliation_strings":["Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, MD 21209, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, MD 21209, USA","institution_ids":["https://openalex.org/I126744593"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5009719245","https://openalex.org/A5036275858","https://openalex.org/A5069095946"],"corresponding_institution_ids":["https://openalex.org/I126744593"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.8247,"has_fulltext":true,"cited_by_count":67,"citation_normalized_percentile":{"value":0.85850671,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"46","issue":"D1","first_page":"D575","last_page":"D580"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolome","display_name":"Metabolome","score":0.8288442492485046},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7515559196472168},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6511094570159912},{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.6457809805870056},{"id":"https://openalex.org/keywords/pseudomonas-aeruginosa","display_name":"Pseudomonas aeruginosa","score":0.5962090492248535},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.5356407165527344},{"id":"https://openalex.org/keywords/metabolite","display_name":"Metabolite","score":0.5216741561889648},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5114845037460327},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.4362131953239441},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.39622628688812256},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.33894604444503784},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.295551061630249},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.25823265314102173},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23291859030723572},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.07851973176002502}],"concepts":[{"id":"https://openalex.org/C135870905","wikidata":"https://www.wikidata.org/wiki/Q903667","display_name":"Metabolome","level":3,"score":0.8288442492485046},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7515559196472168},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6511094570159912},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.6457809805870056},{"id":"https://openalex.org/C2777637488","wikidata":"https://www.wikidata.org/wiki/Q31856","display_name":"Pseudomonas aeruginosa","level":3,"score":0.5962090492248535},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.5356407165527344},{"id":"https://openalex.org/C2777477808","wikidata":"https://www.wikidata.org/wiki/Q407595","display_name":"Metabolite","level":2,"score":0.5216741561889648},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5114845037460327},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.4362131953239441},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.39622628688812256},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.33894604444503784},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.295551061630249},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.25823265314102173},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23291859030723572},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.07851973176002502}],"mesh":[{"descriptor_ui":"D011550","descriptor_name":"Pseudomonas aeruginosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011550","descriptor_name":"Pseudomonas aeruginosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011550","descriptor_name":"Pseudomonas aeruginosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055442","descriptor_name":"Metabolome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055442","descriptor_name":"Metabolome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055442","descriptor_name":"Metabolome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkx1061","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx1061","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D575/23162169/gkx1061.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:29106626","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29106626","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:4668328","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5753269","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkx1061","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx1061","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D575/23162169/gkx1061.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12","score":0.550000011920929}],"awards":[{"id":"https://openalex.org/G2314646674","display_name":null,"funder_award_id":"R01 AI123320","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G300927695","display_name":null,"funder_award_id":"R01 AI102883","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G439796470","display_name":null,"funder_award_id":"T32-GM-0667-06","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5133898066","display_name":null,"funder_award_id":"AI102883","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2766295385.pdf","grobid_xml":"https://content.openalex.org/works/W2766295385.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W215943697","https://openalex.org/W1565711171","https://openalex.org/W1825722006","https://openalex.org/W1935434993","https://openalex.org/W1977938546","https://openalex.org/W1977938917","https://openalex.org/W1982390234","https://openalex.org/W1982654897","https://openalex.org/W1998269749","https://openalex.org/W1998767819","https://openalex.org/W2008818963","https://openalex.org/W2015292449","https://openalex.org/W2021783148","https://openalex.org/W2026566085","https://openalex.org/W2034129786","https://openalex.org/W2036335453","https://openalex.org/W2036595331","https://openalex.org/W2041585304","https://openalex.org/W2041854993","https://openalex.org/W2055043387","https://openalex.org/W2062872324","https://openalex.org/W2063028213","https://openalex.org/W2077513513","https://openalex.org/W2098914778","https://openalex.org/W2099164168","https://openalex.org/W2108296508","https://openalex.org/W2110375707","https://openalex.org/W2111416348","https://openalex.org/W2114686516","https://openalex.org/W2120869341","https://openalex.org/W2128601422","https://openalex.org/W2139138803","https://openalex.org/W2142669967","https://openalex.org/W2144274162","https://openalex.org/W2150766693","https://openalex.org/W2155991374","https://openalex.org/W2157249364","https://openalex.org/W2159511040","https://openalex.org/W2161693124","https://openalex.org/W2163679363","https://openalex.org/W2165649953","https://openalex.org/W2165681080","https://openalex.org/W2169678694","https://openalex.org/W2177317049","https://openalex.org/W2179324586","https://openalex.org/W2289454311","https://openalex.org/W2298239051","https://openalex.org/W2481021241","https://openalex.org/W2496365375","https://openalex.org/W2558428302","https://openalex.org/W2559588208","https://openalex.org/W2608175455","https://openalex.org/W2615624902","https://openalex.org/W4211015155"],"related_works":["https://openalex.org/W1996644818","https://openalex.org/W1965468642","https://openalex.org/W2093500216","https://openalex.org/W2053588008","https://openalex.org/W2916376502","https://openalex.org/W2260452057","https://openalex.org/W3101161779","https://openalex.org/W423371831","https://openalex.org/W2777729175","https://openalex.org/W4295779760"],"abstract_inverted_index":{"The":[0,66,97,151,170],"Pseudomonas":[1],"aeruginosaMetabolome":[2],"Database":[3],"(PAMDB,":[4],"http://pseudomonas.umaryland.edu)":[5],"is":[6,19,41,68],"a":[7,20,33,42,178],"searchable,":[8],"richly":[9],"annotated":[10],"metabolite":[11,119],"database":[12,98,152],"specific":[13],"to":[14,29,91,181],"P.":[15,17,39],"aeruginosa.":[16],"aeruginosa":[18,40],"soil":[21],"organism":[22,44],"and":[23,53,64,77,82,86,95,107,127,130,137,141,148,160,167,172,186,194],"significant":[24],"opportunistic":[25],"pathogen":[26],"that":[27],"adapts":[28],"its":[30,173],"environment":[31],"through":[32],"versatile":[34],"energy":[35],"metabolism":[36],"network.":[37],"Furthermore,":[38],"model":[43],"for":[45],"the":[46,71],"study":[47],"of":[48,57],"biofilm":[49],"formation,":[50],"quorum":[51],"sensing,":[52],"bioremediation":[54],"processes,":[55],"each":[56,118],"which":[58],"are":[59],"dependent":[60],"on":[61,70],"unique":[62],"pathways":[63,88],"metabolites.":[65],"PAMDB":[67],"modelled":[69],"Escherichia":[72],"coli":[73],"(ECMDB),":[74],"yeast":[75],"(YMDB)":[76],"human":[78],"(HMDB)":[79],"metabolome":[80],"databases":[81],"contains":[83],">4370":[84],"metabolites":[85],"938":[87],"with":[89,164],"links":[90],"over":[92],"1260":[93],"genes":[94],"proteins.":[96],"information":[99],"was":[100],"compiled":[101],"from":[102],"electronic":[103],"databases,":[104],"journal":[105],"articles":[106],"mass":[108],"spectrometry":[109],"(MS)":[110],"metabolomic":[111],"data":[112],"obtained":[113],"in":[114,188],"our":[115],"laboratories.":[116],"For":[117],"entered,":[120],"we":[121],"provide":[122,177],"detailed":[123],"compound":[124],"descriptions,":[125],"names":[126],"synonyms,":[128],"structural":[129],"physiochemical":[131],"information,":[132,143],"nuclear":[133],"magnetic":[134],"resonance":[135],"(NMR)":[136],"MS":[138],"spectra,":[139],"enzymes":[140],"pathway":[142,168],"as":[144,146],"well":[145],"gene":[147],"protein":[149,166],"sequences.":[150],"allows":[153],"extensive":[154],"searching":[155],"via":[156],"chemical":[157],"names,":[158],"structure":[159],"molecular":[161],"weight,":[162],"together":[163],"gene,":[165],"relationships.":[169],"PAMBD":[171],"future":[174],"iterations":[175],"will":[176],"valuable":[179],"resource":[180],"biologists,":[182],"natural":[183],"product":[184],"chemists":[185],"clinicians":[187],"identifying":[189],"active":[190],"compounds,":[191],"potential":[192],"biomarkers":[193],"clinical":[195],"diagnostics.":[196]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":17},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}