{"id":"https://openalex.org/W4247950422","doi":"https://doi.org/10.1093/nar/gkx1060","title":"fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks","display_name":"fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks","publication_year":2017,"publication_date":"2017-10-23","ids":{"openalex":"https://openalex.org/W4247950422","doi":"https://doi.org/10.1093/nar/gkx1060","pmid":"https://pubmed.ncbi.nlm.nih.gov/29112720"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkx1060","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx1060","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D535/23162162/gkx1060.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/46/D1/D535/23162162/gkx1060.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069971220","display_name":"Chengsheng Zhu","orcid":"https://orcid.org/0000-0002-4849-1246"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chengsheng Zhu","raw_affiliation_strings":["Department of Biochemistry and Microbiology, Rutgers University, 76 Lipman Dr, New Brunswick, NJ 08873, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Microbiology, Rutgers University, 76 Lipman Dr, New Brunswick, NJ 08873, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090706824","display_name":"Yannick Mahlich","orcid":"https://orcid.org/0000-0002-0717-2927"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I4210137766","display_name":"Institute for Advanced Study","ror":"https://ror.org/03xg85719","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210137766"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Yannick Mahlich","raw_affiliation_strings":["Computational Biology & Bioinformatics - i12 Informatics, Technical University of Munich (TUM), Boltzmannstrasse 3, 85748 Garching/Munich, Germany","Department of Biochemistry and Microbiology, Rutgers University, 76 Lipman Dr, New Brunswick, NJ 08873, USA","Institute for Advanced Study, Technical University of Munich (TUM), Lichtenbergstrasse 2 a, 85748 Garching/Munich, Germany","TUM Graduate School, Center of Doctoral Studies in Informatics and its Applications (CeDoSIA), Technical University of Munich (TUM), 85748 Garching/Munich, Germany"],"raw_orcid":"https://orcid.org/0000-0002-0717-2927","affiliations":[{"raw_affiliation_string":"Computational Biology & Bioinformatics - i12 Informatics, Technical University of Munich (TUM), Boltzmannstrasse 3, 85748 Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Department of Biochemistry and Microbiology, Rutgers University, 76 Lipman Dr, New Brunswick, NJ 08873, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Institute for Advanced Study, Technical University of Munich (TUM), Lichtenbergstrasse 2 a, 85748 Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508","https://openalex.org/I4210137766"]},{"raw_affiliation_string":"TUM Graduate School, Center of Doctoral Studies in Informatics and its Applications (CeDoSIA), Technical University of Munich (TUM), 85748 Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032442952","display_name":"Max J. Miller","orcid":"https://orcid.org/0000-0002-1335-9499"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Maximilian Miller","raw_affiliation_strings":["Computational Biology & Bioinformatics - i12 Informatics, Technical University of Munich (TUM), Boltzmannstrasse 3, 85748 Garching/Munich, Germany","Department of Biochemistry and Microbiology, Rutgers University, 76 Lipman Dr, New Brunswick, NJ 08873, USA","TUM Graduate School, Center of Doctoral Studies in Informatics and its Applications (CeDoSIA), Technical University of Munich (TUM), 85748 Garching/Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology & Bioinformatics - i12 Informatics, Technical University of Munich (TUM), Boltzmannstrasse 3, 85748 Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Department of Biochemistry and Microbiology, Rutgers University, 76 Lipman Dr, New Brunswick, NJ 08873, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"TUM Graduate School, Center of Doctoral Studies in Informatics and its Applications (CeDoSIA), Technical University of Munich (TUM), 85748 Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089912529","display_name":"Yana Bromberg","orcid":"https://orcid.org/0000-0002-8351-0844"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I4210137766","display_name":"Institute for Advanced Study","ror":"https://ror.org/03xg85719","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210137766"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Yana Bromberg","raw_affiliation_strings":["Department of Biochemistry and Microbiology, Rutgers University, 76 Lipman Dr, New Brunswick, NJ 08873, USA","Institute for Advanced Study, Technical University of Munich (TUM), Lichtenbergstrasse 2 a, 85748 Garching/Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Microbiology, Rutgers University, 76 Lipman Dr, New Brunswick, NJ 08873, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Institute for Advanced Study, Technical University of Munich (TUM), Lichtenbergstrasse 2 a, 85748 Garching/Munich, Germany","institution_ids":["https://openalex.org/I62916508","https://openalex.org/I4210137766"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5089912529","https://openalex.org/A5090706824"],"corresponding_institution_ids":["https://openalex.org/I102322142","https://openalex.org/I4210137766","https://openalex.org/I62916508"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":1267,"currency":"EUR","value_usd":1366},"fwci":0.8984,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.74586132,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"46","issue":"D1","first_page":"D535","last_page":"D541"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8440432548522949},{"id":"https://openalex.org/keywords/niche","display_name":"Niche","score":0.665291428565979},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6594235897064209},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.6255980730056763},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.5447514653205872},{"id":"https://openalex.org/keywords/microbial-ecology","display_name":"Microbial ecology","score":0.51063472032547},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.5093377828598022},{"id":"https://openalex.org/keywords/three-domain-system","display_name":"Three-domain system","score":0.4928889274597168},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4861109256744385},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4737226068973541},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.41507506370544434},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.37992194294929504},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.25998634099960327},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.22889494895935059},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19544363021850586},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17308664321899414},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.14238449931144714}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8440432548522949},{"id":"https://openalex.org/C153991713","wikidata":"https://www.wikidata.org/wiki/Q17142856","display_name":"Niche","level":2,"score":0.665291428565979},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6594235897064209},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.6255980730056763},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.5447514653205872},{"id":"https://openalex.org/C69562835","wikidata":"https://www.wikidata.org/wiki/Q3054637","display_name":"Microbial ecology","level":3,"score":0.51063472032547},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.5093377828598022},{"id":"https://openalex.org/C188880781","wikidata":"https://www.wikidata.org/wiki/Q2430501","display_name":"Three-domain system","level":4,"score":0.4928889274597168},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4861109256744385},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4737226068973541},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.41507506370544434},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.37992194294929504},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.25998634099960327},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.22889494895935059},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19544363021850586},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17308664321899414},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.14238449931144714},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D004783","descriptor_name":"Environmental Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004783","descriptor_name":"Environmental Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004783","descriptor_name":"Environmental Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018407","descriptor_name":"Bacterial Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018407","descriptor_name":"Bacterial Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018407","descriptor_name":"Bacterial Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046940","descriptor_name":"Synechococcus","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D046940","descriptor_name":"Synechococcus","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D046940","descriptor_name":"Synechococcus","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D046940","descriptor_name":"Synechococcus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D046940","descriptor_name":"Synechococcus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D046940","descriptor_name":"Synechococcus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D046940","descriptor_name":"Synechococcus","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D046940","descriptor_name":"Synechococcus","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D046940","descriptor_name":"Synechococcus","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkx1060","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx1060","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D535/23162162/gkx1060.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:29112720","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29112720","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:alma.01RUT_INST:11664978750004646","is_oa":false,"landing_page_url":"https://scholarship.libraries.rutgers.edu/esploro/outputs/journalArticle/fusionDB-assessing-microbial-diversity-and-environmental/991031665609404646","pdf_url":null,"source":{"id":"https://openalex.org/S4210197018","display_name":"View","issn_l":"2688-268X","issn":["2688-268X","2688-3988"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:mediatum.ub.tum.de:node/1432462","is_oa":true,"landing_page_url":"http://mediatum.ub.tum.de/node?id=1432462","pdf_url":null,"source":{"id":"https://openalex.org/S4306400453","display_name":"mediaTUM \u2013 the media and publications repository of the Technical University Munich (Technical University Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5753390","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkx1060","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkx1060","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkx1060","pdf_url":"https://academic.oup.com/nar/article-pdf/46/D1/D535/23162162/gkx1060.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6800000071525574}],"awards":[{"id":"https://openalex.org/G2468988549","display_name":null,"funder_award_id":"291763","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6134287873","display_name":null,"funder_award_id":"1553289","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6671297155","display_name":null,"funder_award_id":"CAREER","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8345540293","display_name":null,"funder_award_id":"291763","funder_id":"https://openalex.org/F4320323383","funder_display_name":"Technische Universit\u00e4t M\u00fcnchen"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320323383","display_name":"Technische Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/02kkvpp62"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4247950422.pdf","grobid_xml":"https://content.openalex.org/works/W4247950422.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1111946748","https://openalex.org/W1692744135","https://openalex.org/W1710186000","https://openalex.org/W1990240633","https://openalex.org/W1991402127","https://openalex.org/W2004548026","https://openalex.org/W2014513938","https://openalex.org/W2027831845","https://openalex.org/W2046594601","https://openalex.org/W2055043387","https://openalex.org/W2081716616","https://openalex.org/W2096525273","https://openalex.org/W2111373249","https://openalex.org/W2115595474","https://openalex.org/W2130956021","https://openalex.org/W2155606054","https://openalex.org/W2160378127","https://openalex.org/W2224056471","https://openalex.org/W2329416458","https://openalex.org/W4212865600","https://openalex.org/W4231897523","https://openalex.org/W4250297812","https://openalex.org/W4255375128"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W2466475499","https://openalex.org/W3037883442","https://openalex.org/W2377830324","https://openalex.org/W3024708790","https://openalex.org/W1993459189"],"abstract_inverted_index":{"Microbial":[0],"functional":[1,70,92,153],"diversification":[2],"is":[3,112],"driven":[4],"by":[5,120],"environmental":[6,13],"factors,":[7],"i.e.":[8],"microorganisms":[9],"inhabiting":[10],"the":[11,60,73,143,152],"same":[12],"niche":[14],"tend":[15],"to":[16,59,94,151],"be":[17],"more":[18,35],"functionally":[19],"similar":[20],"than":[21,38],"those":[22],"from":[23,78],"different":[24],"environments.":[25],"In":[26],"some":[27],"cases,":[28],"even":[29],"closely":[30],"phylogenetically":[31],"related":[32],"microbes":[33,125],"differ":[34],"across":[36,39],"environments":[37],"taxa.":[40],"While":[41],"microbial":[42,57,69,149],"similarities":[43,71],"are":[44,126],"often":[45],"reported":[46],"in":[47],"terms":[48],"of":[49,75,117,137,155,171],"taxonomic":[50],"relationships,":[51],"no":[52],"existing":[53],"databases":[54],"directly":[55],"link":[56],"functions":[58,118],"environment.":[61],"We":[62],"previously":[63],"developed":[64],"a":[65,86,115,168],"method":[66],"for":[67],"comparing":[68,172],"on":[72],"basis":[74],"proteins":[76],"translated":[77],"their":[79],"sequenced":[80],"genomes.":[81],"Here,":[82],"we":[83],"describe":[84],"fusionDB,":[85],"novel":[87],"database":[88],"that":[89,162],"uses":[90],"our":[91],"data":[93],"represent":[95],"1374":[96],"taxonomically":[97],"distinct":[98],"bacteria":[99],"annotated":[100],"with":[101],"available":[102],"metadata:":[103],"habitat/niche,":[104],"preferred":[105],"temperature,":[106],"and":[107,123,140,180],"oxygen":[108],"use.":[109],"Each":[110],"microbe":[111],"encoded":[113],"as":[114],"set":[116],"represented":[119],"its":[121],"proteome":[122],"individual":[124],"connected":[127],"via":[128,135],"common":[129],"functions.":[130],"Users":[131],"can":[132],"search":[133],"fusionDB":[134,166],"combinations":[136],"organism":[138],"names":[139],"metadata.":[141],"Moreover,":[142],"web":[144],"interface":[145],"allows":[146],"mapping":[147],"new":[148],"genomes":[150],"spectrum":[154],"reference":[156],"bacteria,":[157],"rendering":[158],"interactive":[159],"similarity":[160],"networks":[161],"highlight":[163],"shared":[164],"functionality.":[165,184],"provides":[167],"fast":[169],"means":[170],"microbes,":[173],"identifying":[174],"potential":[175],"horizontal":[176],"gene":[177],"transfer":[178],"events,":[179],"highlighting":[181],"key":[182],"environment-specific":[183]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}