{"id":"https://openalex.org/W2540248611","doi":"https://doi.org/10.1093/nar/gkw996","title":"NGSmethDB 2017: enhanced methylomes and differential methylation","display_name":"NGSmethDB 2017: enhanced methylomes and differential methylation","publication_year":2016,"publication_date":"2016-10-14","ids":{"openalex":"https://openalex.org/W2540248611","doi":"https://doi.org/10.1093/nar/gkw996","mag":"2540248611","pmid":"https://pubmed.ncbi.nlm.nih.gov/27794041"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkw996","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw996","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkw996","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069644962","display_name":"Ricardo Lebr\u00f3n","orcid":"https://orcid.org/0000-0002-5120-843X"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I4210150145","display_name":"Parque Tecnol\u00f3gico de la Salud","ror":"https://ror.org/0503gyy63","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210150145"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ricardo Lebr\u00f3n","raw_affiliation_strings":["Department of Genetics, Faculty of Science, University of Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain","Laboratory of Bioinformatics, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Faculty of Science, University of Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Laboratory of Bioinformatics, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","institution_ids":["https://openalex.org/I4210150145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013466832","display_name":"Cristina G\u00f3mez\u2010Mart\u00edn","orcid":"https://orcid.org/0000-0003-0866-4103"},"institutions":[{"id":"https://openalex.org/I4210150145","display_name":"Parque Tecnol\u00f3gico de la Salud","ror":"https://ror.org/0503gyy63","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210150145"]},{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Cristina G\u00f3mez-Mart\u00edn","raw_affiliation_strings":["Department of Genetics, Faculty of Science, University of Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain","Laboratory of Bioinformatics, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Faculty of Science, University of Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Laboratory of Bioinformatics, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","institution_ids":["https://openalex.org/I4210150145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074555181","display_name":"Pedro Carpena","orcid":"https://orcid.org/0000-0001-5568-0216"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Pedro Carpena","raw_affiliation_strings":["Department of Applied Physics II, Universidad de M\u00e1laga, 29071 M\u00e1laga, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Applied Physics II, Universidad de M\u00e1laga, 29071 M\u00e1laga, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050320939","display_name":"Pedro Bernaola\u2010Galv\u00e1n","orcid":"https://orcid.org/0000-0002-2895-3116"},"institutions":[{"id":"https://openalex.org/I82767444","display_name":"Universidad de M\u00e1laga","ror":"https://ror.org/036b2ww28","country_code":"ES","type":"education","lineage":["https://openalex.org/I82767444"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Pedro Bernaola-Galv\u00e1n","raw_affiliation_strings":["Department of Applied Physics II, Universidad de M\u00e1laga, 29071 M\u00e1laga, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Applied Physics II, Universidad de M\u00e1laga, 29071 M\u00e1laga, Spain","institution_ids":["https://openalex.org/I82767444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039320926","display_name":"Guillermo Barturen","orcid":"https://orcid.org/0000-0003-2103-1028"},"institutions":[{"id":"https://openalex.org/I4210142177","display_name":"Pfizer-University of Granada-Junta de Andaluc\u00eda Centre for Genomics and Oncological Research","ror":"https://ror.org/04hr99439","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210142177"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Guillermo Barturen","raw_affiliation_strings":["Genetics of Complex Diseases Group, GENyO, Pfizer-University of Granada-Junta de Andaluc\u00eda Center for Genomics and Oncological Research, 18100-Granada, Spain"],"affiliations":[{"raw_affiliation_string":"Genetics of Complex Diseases Group, GENyO, Pfizer-University of Granada-Junta de Andaluc\u00eda Center for Genomics and Oncological Research, 18100-Granada, Spain","institution_ids":["https://openalex.org/I4210142177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084745527","display_name":"Michael Hackenberg","orcid":"https://orcid.org/0000-0003-2248-3114"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I4210150145","display_name":"Parque Tecnol\u00f3gico de la Salud","ror":"https://ror.org/0503gyy63","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210150145"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Michael Hackenberg","raw_affiliation_strings":["Department of Genetics, Faculty of Science, University of Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain hackenberg@ugr.es","Laboratory of Bioinformatics, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","Department of Genetics, Faculty of Science, University of Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Faculty of Science, University of Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain hackenberg@ugr.es","institution_ids":[]},{"raw_affiliation_string":"Laboratory of Bioinformatics, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","institution_ids":["https://openalex.org/I4210150145"]},{"raw_affiliation_string":"Department of Genetics, Faculty of Science, University of Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009966967","display_name":"Jos\u00e9 Luis Tejera Oliver","orcid":"https://orcid.org/0000-0003-0216-0393"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I4210150145","display_name":"Parque Tecnol\u00f3gico de la Salud","ror":"https://ror.org/0503gyy63","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210150145"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jos\u00e9 L. Oliver","raw_affiliation_strings":["Department of Genetics, Faculty of Science, University of Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain oliver@ugr.es","Laboratory of Bioinformatics, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","Department of Genetics, Faculty of Science, University of Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Faculty of Science, University of Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain oliver@ugr.es","institution_ids":[]},{"raw_affiliation_string":"Laboratory of Bioinformatics, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","institution_ids":["https://openalex.org/I4210150145"]},{"raw_affiliation_string":"Department of Genetics, Faculty of Science, University of Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5009966967"],"corresponding_institution_ids":["https://openalex.org/I173304897","https://openalex.org/I4210150145"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.0459,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.79185346,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"45","issue":"D1","first_page":"D97","last_page":"D103"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13157","display_name":"Cancer-related gene regulation","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6003212928771973},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5278905630111694},{"id":"https://openalex.org/keywords/json","display_name":"JSON","score":0.5199093222618103},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49811387062072754},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.45925161242485046},{"id":"https://openalex.org/keywords/methylation","display_name":"Methylation","score":0.43966299295425415},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.4376007616519928},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4373798966407776},{"id":"https://openalex.org/keywords/relational-database","display_name":"Relational database","score":0.4272230863571167},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38344648480415344},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2696581184864044},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1659117341041565},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.1655944287776947}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6003212928771973},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5278905630111694},{"id":"https://openalex.org/C2780416260","wikidata":"https://www.wikidata.org/wiki/Q2063","display_name":"JSON","level":2,"score":0.5199093222618103},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49811387062072754},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.45925161242485046},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.43966299295425415},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.4376007616519928},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4373798966407776},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.4272230863571167},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38344648480415344},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2696581184864044},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1659117341041565},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.1655944287776947},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003596","descriptor_name":"Cytosine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003596","descriptor_name":"Cytosine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003596","descriptor_name":"Cytosine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gkw996","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw996","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:27794041","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27794041","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire/7eac1802-4b82-4099-9a74-1514ea25379b","is_oa":true,"landing_page_url":"https://research.vumc.nl/en/publications/7eac1802-4b82-4099-9a74-1514ea25379b","pdf_url":null,"source":{"id":"https://openalex.org/S7407055350","display_name":"Amsterdam UMC (VU Amsterdam) - Institutional Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lebr\u00f3n, R, G\u00f3mez-Mart\u00edn, C, Carpena, P, Bernaola-Galv\u00e1n, P, Barturen, G, Hackenberg, M & Oliver, J L 2017, 'NGSmethDB 2017 : Enhanced methylomes and differential methylation', Nucleic Acids Research, vol. 45, no. D1, pp. D97-D103. https://doi.org/10.1093/nar/gkw996","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.amsterdamumc.nl:openaire_cris_publications/4922502b-364f-4819-98fb-d32f56d67350","is_oa":true,"landing_page_url":"https://pure.amsterdamumc.nl/en/publications/4922502b-364f-4819-98fb-d32f56d67350","pdf_url":"https://pure.amsterdamumc.nl/ws/files/158981707/Ngsmethdb-2017.pdf","source":{"id":"https://openalex.org/S7407055222","display_name":"Pure Amsterdam UMC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Lebr\u00f3n, R, G\u00f3mez-Mart\u00edn, C, Carpena, P, Bernaola-Galv\u00e1n, P, Barturen, G, Hackenberg, M & Oliver, J L 2017, 'NGSmethDB 2017 : Enhanced methylomes and differential methylation', Nucleic acids research, vol. 45, no. D1, pp. D97-D103. https://doi.org/10.1093/nar/gkw996","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:www.repositoriosalud.es:10668/10565","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210667/pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4377196114","display_name":"RISalud Institutional Health Repository of Andaluc\u00eda","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"research article"},{"id":"pmh:oai:digibug.ugr.es:10481/110767","is_oa":false,"landing_page_url":"https://hdl.handle.net/10481/110767","pdf_url":null,"source":{"id":"https://openalex.org/S4306400567","display_name":"Institutional Repository of the University of Granada (University of Granada)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173304897","host_organization_name":"Universidad de Granada","host_organization_lineage":["https://openalex.org/I173304897"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"VoR"},{"id":"pmh:oai:open-archive.highwire.org:nar:45/D1/D97","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/45/D1/D97","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:5210667","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkw996","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkw996","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw996","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.44999998807907104,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323834","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":69,"referenced_works":["https://openalex.org/W1506411903","https://openalex.org/W1520217146","https://openalex.org/W1658127082","https://openalex.org/W1808248494","https://openalex.org/W1953569147","https://openalex.org/W1965207949","https://openalex.org/W1979521131","https://openalex.org/W1979594866","https://openalex.org/W1979892065","https://openalex.org/W1986849101","https://openalex.org/W1987081708","https://openalex.org/W1997866877","https://openalex.org/W1999348612","https://openalex.org/W2004440539","https://openalex.org/W2018838463","https://openalex.org/W2025998934","https://openalex.org/W2042545888","https://openalex.org/W2043577705","https://openalex.org/W2049907774","https://openalex.org/W2050249780","https://openalex.org/W2054883945","https://openalex.org/W2059099579","https://openalex.org/W2065751798","https://openalex.org/W2067236154","https://openalex.org/W2067700416","https://openalex.org/W2069796345","https://openalex.org/W2072139119","https://openalex.org/W2072603366","https://openalex.org/W2074746593","https://openalex.org/W2076154138","https://openalex.org/W2076628461","https://openalex.org/W2081859505","https://openalex.org/W2084118479","https://openalex.org/W2089585002","https://openalex.org/W2090080518","https://openalex.org/W2095727856","https://openalex.org/W2097324844","https://openalex.org/W2099343472","https://openalex.org/W2100475900","https://openalex.org/W2101979000","https://openalex.org/W2106124267","https://openalex.org/W2118258530","https://openalex.org/W2119224628","https://openalex.org/W2121475945","https://openalex.org/W2122707695","https://openalex.org/W2126958666","https://openalex.org/W2128016314","https://openalex.org/W2129424472","https://openalex.org/W2131138723","https://openalex.org/W2131271579","https://openalex.org/W2131374955","https://openalex.org/W2139031446","https://openalex.org/W2141611532","https://openalex.org/W2142257318","https://openalex.org/W2142972012","https://openalex.org/W2150194502","https://openalex.org/W2159065634","https://openalex.org/W2161399316","https://openalex.org/W2164214190","https://openalex.org/W2164379940","https://openalex.org/W2170551349","https://openalex.org/W2173732482","https://openalex.org/W2247766769","https://openalex.org/W2254034232","https://openalex.org/W2309481081","https://openalex.org/W2346143774","https://openalex.org/W4237242764","https://openalex.org/W6636882156","https://openalex.org/W6680832556"],"related_works":["https://openalex.org/W2753132265","https://openalex.org/W4234766820","https://openalex.org/W4321232174","https://openalex.org/W3117520771","https://openalex.org/W2482048793","https://openalex.org/W4388027365","https://openalex.org/W3113257914","https://openalex.org/W2938860153","https://openalex.org/W4312551432","https://openalex.org/W4389286057"],"abstract_inverted_index":{"The":[0,48,103],"2017":[1],"update":[2],"of":[3,42,69,85,100],"NGSmethDB":[4,71,104,185],"stores":[5],"whole":[6],"genome":[7,45,98,140],"methylomes":[8],"generated":[9],"from":[10,173],"short-read":[11],"data":[12,180],"sets":[13],"obtained":[14],"by":[15],"bisulfite":[16],"sequencing":[17],"(WGBS)":[18],"technology.":[19],"To":[20],"generate":[21],"high-quality":[22],"methylomes,":[23],"stringent":[24],"quality":[25],"controls":[26],"were":[27,50,132],"integrated":[28],"with":[29],"third-part":[30,146],"software,":[31],"adding":[32],"also":[33,154],"a":[34,63,79,111,157,161,165],"two-step":[35],"mapping":[36],"process":[37],"to":[38,145,184,189,192],"exploit":[39],"the":[40,43,67,83,150,187],"advantages":[41],"new":[44],"assembly":[46],"models.":[47],"samples":[49],"all":[51],"profiled":[52],"under":[53],"constant":[54],"parameter":[55],"settings,":[56],"thus":[57,121],"enabling":[58],"comparative":[59,124,143],"downstream":[60],"analyses.":[61,125],"Besides":[62,126],"significant":[64],"increase":[65],"in":[66,139],"number":[68],"samples,":[70],"now":[72,107],"includes":[73],"two":[74],"additional":[75],"data-types,":[76],"which":[77,134],"are":[78],"valuable":[80],"resource":[81],"for":[82,170],"discovery":[84],"methylation":[86,95,179],"epigenetic":[87],"biomarkers:":[88],"(i)":[89],"differentially":[90],"methylated":[91],"single-cytosines;":[92],"and":[93,118,142,164],"(ii)":[94],"segments":[96],"(i.e.":[97],"regions":[99],"homogeneous":[101],"methylation).":[102],"back-end":[105],"is":[106],"based":[108],"on":[109],"MongoDB,":[110],"NoSQL":[112],"hierarchical":[113],"database":[114,128,136,151],"using":[115],"JSON-formatted":[116],"documents":[117],"dynamic":[119],"schemas,":[120],"accelerating":[122],"sample":[123],"conventional":[127],"dumps,":[129],"track":[130],"hubs":[131],"implemented,":[133],"improved":[135],"access,":[137],"visualization":[138],"browsers":[141],"analyses":[144],"annotations.":[147],"In":[148],"addition,":[149],"can":[152,181],"be":[153,182],"accessed":[155],"through":[156],"RESTful":[158],"API.":[159],"Lastly,":[160],"Python":[162],"client":[163],"multiplatform":[166],"virtual":[167],"machine":[168],"allow":[169],"program-driven":[171],"access":[172],"user":[174],"desktop.":[175],"This":[176],"way,":[177],"private":[178],"compared":[183],"without":[186],"need":[188],"upload":[190],"them":[191],"public":[193],"servers.":[194],"Database":[195],"website:":[196],"http://bioinfo2.ugr.es/NGSmethDB.":[197]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
