{"id":"https://openalex.org/W2542090653","doi":"https://doi.org/10.1093/nar/gkw992","title":"Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements","display_name":"Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements","publication_year":2016,"publication_date":"2016-10-21","ids":{"openalex":"https://openalex.org/W2542090653","doi":"https://doi.org/10.1093/nar/gkw992","mag":"2542090653","pmid":"https://pubmed.ncbi.nlm.nih.gov/27794040"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkw992","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw992","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkw992","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032834043","display_name":"Supratim Mukherjee","orcid":"https://orcid.org/0000-0002-6322-2271"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Supratim Mukherjee","raw_affiliation_strings":["Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079750956","display_name":"Dimitri Stamatis","orcid":null},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dimitri Stamatis","raw_affiliation_strings":["Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087758397","display_name":"Jon Bertsch","orcid":null},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jon Bertsch","raw_affiliation_strings":["Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016977221","display_name":"Galina Ovchinnikova","orcid":"https://orcid.org/0000-0001-8114-1259"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Galina Ovchinnikova","raw_affiliation_strings":["Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075928824","display_name":"Olena Verezemska","orcid":null},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Olena Verezemska","raw_affiliation_strings":["Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082576596","display_name":"Michelle Isbandi","orcid":null},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michelle Isbandi","raw_affiliation_strings":["Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086518197","display_name":"Alex D. Thomas","orcid":null},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex D. Thomas","raw_affiliation_strings":["Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109413633","display_name":"Rida Ali","orcid":null},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rida Ali","raw_affiliation_strings":["Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014757241","display_name":"Kaushal Kishore Sharma","orcid":null},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kaushal Sharma","raw_affiliation_strings":["Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023696415","display_name":"Nikos C. Kyrpides","orcid":"https://orcid.org/0000-0002-6131-0462"},"institutions":[{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Nikos C. Kyrpides","raw_affiliation_strings":["Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia","Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA nckyrpides@lbl.gov","Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia","institution_ids":["https://openalex.org/I185163786"]},{"raw_affiliation_string":"Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA nckyrpides@lbl.gov","institution_ids":[]},{"raw_affiliation_string":"Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050966078","display_name":"T. B. K. Reddy","orcid":"https://orcid.org/0000-0002-0871-5567"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"T.\u00a0B.\u00a0K. Reddy","raw_affiliation_strings":["Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA tbreddy@lbl.gov","Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA tbreddy@lbl.gov","institution_ids":[]},{"raw_affiliation_string":"Prokaryotic Super Program, DOE Joint Genome Institute, Walnut Creek, 94598 CA, USA","institution_ids":["https://openalex.org/I196679689"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5050966078"],"corresponding_institution_ids":["https://openalex.org/I196679689"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":20.0175,"has_fulltext":true,"cited_by_count":154,"citation_normalized_percentile":{"value":0.99561489,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"45","issue":"D1","first_page":"D446","last_page":"D456"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7678479552268982},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.6835182905197144},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6801199316978455},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6579540371894836},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.46701082587242126},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42338889837265015},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.38807255029678345},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3830704987049103},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2577226161956787},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17454254627227783},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16025614738464355}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7678479552268982},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.6835182905197144},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6801199316978455},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6579540371894836},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.46701082587242126},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42338889837265015},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.38807255029678345},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3830704987049103},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2577226161956787},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17454254627227783},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16025614738464355},{"id":"https://openalex.org/C58226133","wikidata":"https://www.wikidata.org/wiki/Q1324199","display_name":"Pulmonary surfactant","level":2,"score":0.0},{"id":"https://openalex.org/C55352822","wikidata":"https://www.wikidata.org/wiki/Q5558978","display_name":"Gibbs isotherm","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gkw992","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw992","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:27794040","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27794040","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5210664","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkw992","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:osti.gov:1482516","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1482516","pdf_url":"https://www.osti.gov/servlets/purl/1482516","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:ark:/13030/qt71j5h0tz","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt71j5h0tz","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/71j5h0tz","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic acids research, vol 45, iss D1","raw_type":"article"},{"id":"pmh:oai:open-archive.highwire.org:nar:45/D1/D446","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/45/D1/D446","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:qt71j5h0tz","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/71j5h0tz","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Mukherjee, S; Stamatis, D; Bertsch, J; Ovchinnikova, G; Verezemska, O; Isbandi, M; \u00c2\u00a0et al.(2017). Genomes OnLine Database (GOLD) v.6: Data updates and feature enhancements. Nucleic Acids Research, 45(D1), D446 - D456. doi: 10.1093/nar/gkw992. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/71j5h0tz","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkw992","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw992","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4565140552","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5602503670","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320316170","funder_display_name":"Joint Genome Institute"},{"id":"https://openalex.org/G6348972864","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7205239661","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320316170","funder_display_name":"Joint Genome Institute"},{"id":"https://openalex.org/G7368046788","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320316170","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337"},{"id":"https://openalex.org/F4320323389","display_name":"Universit\u00e4t Bielefeld","ror":"https://ror.org/02hpadn98"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W1490137556","https://openalex.org/W1502636502","https://openalex.org/W1555884359","https://openalex.org/W1983341248","https://openalex.org/W1986708244","https://openalex.org/W1987916789","https://openalex.org/W1998302771","https://openalex.org/W2011486440","https://openalex.org/W2016052220","https://openalex.org/W2023046869","https://openalex.org/W2025020367","https://openalex.org/W2053263585","https://openalex.org/W2069541198","https://openalex.org/W2091232725","https://openalex.org/W2091427225","https://openalex.org/W2094726706","https://openalex.org/W2096525273","https://openalex.org/W2104846587","https://openalex.org/W2105462785","https://openalex.org/W2115643606","https://openalex.org/W2129687578","https://openalex.org/W2130956021","https://openalex.org/W2137516483","https://openalex.org/W2139118683","https://openalex.org/W2141461779","https://openalex.org/W2142678031","https://openalex.org/W2148004368","https://openalex.org/W2148474327","https://openalex.org/W2158013774","https://openalex.org/W2158859864","https://openalex.org/W2165446840","https://openalex.org/W2166123725","https://openalex.org/W2178096835","https://openalex.org/W2203192877","https://openalex.org/W2214186913","https://openalex.org/W2230655163","https://openalex.org/W2275721306","https://openalex.org/W2291091413","https://openalex.org/W2314029137","https://openalex.org/W2315521535","https://openalex.org/W2398549794","https://openalex.org/W2412095308","https://openalex.org/W2437388877","https://openalex.org/W2481917454","https://openalex.org/W2488540074","https://openalex.org/W2511251553","https://openalex.org/W2514983714","https://openalex.org/W2915868289","https://openalex.org/W3141714710","https://openalex.org/W4230612179","https://openalex.org/W4237114091","https://openalex.org/W4251386234","https://openalex.org/W4254811854","https://openalex.org/W4255659575","https://openalex.org/W6633386872","https://openalex.org/W6674104329","https://openalex.org/W6694212505","https://openalex.org/W6712912902","https://openalex.org/W6725152663"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330","https://openalex.org/W2392768766","https://openalex.org/W2058118494","https://openalex.org/W4388282505"],"abstract_inverted_index":{"The":[0,101],"Genomes":[1,146],"Online":[2],"Database":[3],"(GOLD)":[4],"(https://gold.jgi.doe.gov)":[5],"is":[6],"a":[7,37,46,107,139],"manually":[8],"curated":[9],"data":[10,165],"management":[11],"system":[12,41,148],"that":[13],"catalogs":[14],"sequencing":[15],"projects":[16,32],"with":[17,87,98,142],"associated":[18],"metadata":[19,90],"from":[20,92,128,133],"around":[21],"the":[22,25,43,143,153,164,172],"world.":[23],"In":[24],"current":[26],"version":[27],"of":[28,45,106,110],"GOLD":[29,62,137],"(v.6),":[30],"all":[31],"are":[33,85,95],"organized":[34],"based":[35],"on":[36],"four":[38],"level":[39],"classification":[40],"in":[42],"form":[44],"Study,":[47],"Organism":[48],"(for":[49,53],"isolates)":[50],"or":[51,130],"Biosample":[52],"environmental":[54],"samples),":[55],"Sequencing":[56,77,111,135],"Project":[57],"and":[58,79,121,149,151,167],"Analysis":[59,82,123],"Project.":[60],"Currently,":[61],"provides":[63,138],"information":[64],"for":[65],"26":[66],"117":[67],"Studies,":[68],"239":[69],"100":[70],"Organisms,":[71],"15":[72],"887":[73],"Biosamples,":[74],"97":[75],"212":[76],"Projects":[78,112,124],"78":[80],"579":[81],"Projects.":[83],"These":[84],"integrated":[86],"over":[88],"312":[89],"fields":[91],"which":[93],"58":[94],"controlled":[96],"vocabularies":[97],"2067":[99],"terms.":[100],"web":[102],"interface":[103,141],"facilitates":[104],"submission":[105],"diverse":[108],"range":[109],"(such":[113,125],"as":[114,126],"isolate":[115],"genome,":[116,118],"single-cell":[117],"metagenome,":[119,129],"metatranscriptome)":[120],"complex":[122],"genome":[127],"combined":[131],"assembly":[132],"multiple":[134],"Projects).":[136],"seamless":[140],"Integrated":[144],"Microbial":[145],"(IMG)":[147],"supports":[150],"promotes":[152],"Genomic":[154],"Standards":[155],"Consortium":[156],"(GSC)":[157],"Minimum":[158],"Information":[159],"standards.":[160],"This":[161],"paper":[162],"describes":[163],"updates":[166],"additional":[168],"features":[169],"added":[170],"during":[171],"last":[173],"two":[174],"years.":[175]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":20},{"year":2019,"cited_by_count":33},{"year":2018,"cited_by_count":44},{"year":2017,"cited_by_count":36},{"year":2016,"cited_by_count":1}],"updated_date":"2026-05-09T13:55:54.758798","created_date":"2025-10-10T00:00:00"}
