{"id":"https://openalex.org/W2543748880","doi":"https://doi.org/10.1093/nar/gkw976","title":"LinkProt: a database collecting information about biological links","display_name":"LinkProt: a database collecting information about biological links","publication_year":2016,"publication_date":"2016-10-13","ids":{"openalex":"https://openalex.org/W2543748880","doi":"https://doi.org/10.1093/nar/gkw976","mag":"2543748880","pmid":"https://pubmed.ncbi.nlm.nih.gov/27794552"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkw976","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw976","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D243/8847311/gkw976.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/45/D1/D243/8847311/gkw976.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040654786","display_name":"Pawe\u0142 D\u0105browski-Tuma\u0144ski","orcid":"https://orcid.org/0000-0001-9412-1716"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Pawel Dabrowski-Tumanski","raw_affiliation_strings":["Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097, Warsaw, Poland","Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093, Warsaw, Poland"],"raw_orcid":"https://orcid.org/0000-0001-9412-1716","affiliations":[{"raw_affiliation_string":"Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023937063","display_name":"Aleksandra I. Jarmolinska","orcid":"https://orcid.org/0000-0002-1259-3611"},"institutions":[{"id":"https://openalex.org/I4210161028","display_name":"College of Europe, Warsaw","ror":"https://ror.org/055560x25","country_code":"PL","type":"education","lineage":["https://openalex.org/I172363630","https://openalex.org/I4210161028"]},{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Aleksandra I. Jarmolinska","raw_affiliation_strings":["Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097, Warsaw, Poland","College of Inter-Faculty Individual Studies in Mathematics and Natural Sciences, University of Warsaw, Banacha 2c, 02-097, Warsaw, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"College of Inter-Faculty Individual Studies in Mathematics and Natural Sciences, University of Warsaw, Banacha 2c, 02-097, Warsaw, Poland","institution_ids":["https://openalex.org/I4210161028","https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058049197","display_name":"Wanda Niemyska","orcid":"https://orcid.org/0000-0003-4167-1807"},"institutions":[{"id":"https://openalex.org/I4210137370","display_name":"Institute of Mathematics","ror":"https://ror.org/04hrrh248","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210137370","https://openalex.org/I99542240"]},{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]},{"id":"https://openalex.org/I864159182","display_name":"University of Silesia in Katowice","ror":"https://ror.org/0104rcc94","country_code":"PL","type":"education","lineage":["https://openalex.org/I864159182"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Wanda Niemyska","raw_affiliation_strings":["Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097, Warsaw, Poland","Institute of Mathematics, University of Silesia, Bankowa 14, 40-007, Katowice, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"Institute of Mathematics, University of Silesia, Bankowa 14, 40-007, Katowice, Poland","institution_ids":["https://openalex.org/I864159182","https://openalex.org/I4210137370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075733920","display_name":"Eric J. Rawdon","orcid":"https://orcid.org/0000-0002-7190-8193"},"institutions":[{"id":"https://openalex.org/I161515732","display_name":"University of St. Thomas - Minnesota","ror":"https://ror.org/05vfxvp80","country_code":"US","type":"education","lineage":["https://openalex.org/I161515732"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric J. Rawdon","raw_affiliation_strings":["Department of Mathematics, University of St. Thomas, Saint Paul, MN 55105, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of St. Thomas, Saint Paul, MN 55105, USA","institution_ids":["https://openalex.org/I161515732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039953634","display_name":"Kenneth C. Millett","orcid":"https://orcid.org/0000-0002-7667-4912"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kenneth C. Millett","raw_affiliation_strings":["Department of Mathematics, University of California, Santa Barbara, CA 93106, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of California, Santa Barbara, CA 93106, USA","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013867366","display_name":"Joanna I. Su\u0142kowska","orcid":"https://orcid.org/0000-0003-2452-0724"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Joanna I. Sulkowska","raw_affiliation_strings":["Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097, Warsaw, Poland","Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093, Warsaw, Poland jsulkowska@chem.uw.edu.pl","Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093, Warsaw, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093, Warsaw, Poland jsulkowska@chem.uw.edu.pl","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5013867366"],"corresponding_institution_ids":["https://openalex.org/I4654613"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.661,"has_fulltext":true,"cited_by_count":51,"citation_normalized_percentile":{"value":0.93370985,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"45","issue":"D1","first_page":"D243","last_page":"D249"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13127","display_name":"Biotin and Related Studies","score":0.9789000153541565,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9758999943733215,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.6260768175125122},{"id":"https://openalex.org/keywords/disulfide-bond","display_name":"Disulfide bond","score":0.47347724437713623},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4715300500392914},{"id":"https://openalex.org/keywords/chain","display_name":"Chain (unit)","score":0.4663856029510498},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4110676944255829},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3897250294685364},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32116782665252686},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.2244219183921814},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.20623713731765747},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2024555504322052},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08191001415252686}],"concepts":[{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.6260768175125122},{"id":"https://openalex.org/C27256138","wikidata":"https://www.wikidata.org/wiki/Q1230226","display_name":"Disulfide bond","level":2,"score":0.47347724437713623},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4715300500392914},{"id":"https://openalex.org/C199185054","wikidata":"https://www.wikidata.org/wiki/Q552299","display_name":"Chain (unit)","level":2,"score":0.4663856029510498},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4110676944255829},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3897250294685364},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32116782665252686},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.2244219183921814},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.20623713731765747},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2024555504322052},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08191001415252686},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001704","descriptor_name":"Biopolymers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001704","descriptor_name":"Biopolymers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001704","descriptor_name":"Biopolymers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gkw976","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw976","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D243/8847311/gkw976.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:27794552","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27794552","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:ir.stthomas.edu:cas_mathpub-1014","is_oa":false,"landing_page_url":"https://ir.stthomas.edu/cas_mathpub/15","pdf_url":null,"source":{"id":"https://openalex.org/S4377196573","display_name":"UST Research Online (University of St. Thomas - Minnesota)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I161515732","host_organization_name":"University of St. Thomas - Minnesota","host_organization_lineage":["https://openalex.org/I161515732"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Mathematics Faculty Publications &amp; Data","raw_type":"text"},{"id":"pmh:ac52b7ba-a5b5-4562-8dd1-a1a8d164d013/oai:rebus.us.edu.pl:20.500.12128/3965","is_oa":false,"landing_page_url":"http://hdl.handle.net/20.500.12128/3965","pdf_url":null,"source":{"id":"https://openalex.org/S4306401248","display_name":"Jagiellonian University Repository (Jagiellonian University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126596746","host_organization_name":"Jagiellonian University","host_organization_lineage":["https://openalex.org/I126596746"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:escholarship.org/ark:/13030/qt25q2r8p1","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/25q2r8p1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic acids research, vol 45, iss D1","raw_type":"article"},{"id":"pmh:oai:open-archive.highwire.org:nar:45/D1/D243","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/45/D1/D243","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:5210653","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5210653","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:qt25q2r8p1","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/25q2r8p1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Dabrowski-Tumanski, P; Jarmolinska, AI; Niemyska, W; Rawdon, EJ; Millett, KC; &amp; Sulkowska, JI. (2017). LinkProt: a database collecting information about biological links. NUCLEIC ACIDS RESEARCH, 45(D1), D243 - D249. doi: 10.1093/nar/gkw976. UC Santa Barbara: Retrieved from: http://www.escholarship.org/uc/item/25q2r8p1","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkw976","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw976","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D243/8847311/gkw976.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321042","display_name":"Fundacja na rzecz Nauki Polskiej","ror":"https://ror.org/048zd9m77"},{"id":"https://openalex.org/F4320323873","display_name":"Uniwersytet Warszawski","ror":"https://ror.org/039bjqg32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2543748880.pdf","grobid_xml":"https://content.openalex.org/works/W2543748880.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W194875141","https://openalex.org/W1971698565","https://openalex.org/W1974256783","https://openalex.org/W1976595458","https://openalex.org/W1980402791","https://openalex.org/W2019218232","https://openalex.org/W2029667189","https://openalex.org/W2033334877","https://openalex.org/W2033780266","https://openalex.org/W2049100090","https://openalex.org/W2050106725","https://openalex.org/W2051202304","https://openalex.org/W2057228803","https://openalex.org/W2058987797","https://openalex.org/W2065427954","https://openalex.org/W2081480012","https://openalex.org/W2091609814","https://openalex.org/W2099430255","https://openalex.org/W2127408623","https://openalex.org/W2154083418","https://openalex.org/W2155075558","https://openalex.org/W2160082320","https://openalex.org/W2162600537","https://openalex.org/W2342906045","https://openalex.org/W2463335714","https://openalex.org/W2502622622","https://openalex.org/W2553019085","https://openalex.org/W2963019220","https://openalex.org/W3105054908","https://openalex.org/W6631331479"],"related_works":["https://openalex.org/W3021626239","https://openalex.org/W2742360428","https://openalex.org/W4247362726","https://openalex.org/W4320830217","https://openalex.org/W2005086142","https://openalex.org/W2765363829","https://openalex.org/W2060570504","https://openalex.org/W2740440","https://openalex.org/W4388324313","https://openalex.org/W21651232"],"abstract_inverted_index":{"Protein":[0],"chains":[1,72,76],"are":[2,101],"known":[3],"to":[4,70,104,126],"fold":[5],"into":[6],"topologically":[7,64],"complex":[8,15,18,41],"shapes,":[9],"such":[10],"as":[11,26,47],"knots,":[12],"slipknots":[13],"or":[14],"lassos.":[16],"This":[17],"topology":[19,42,106,129],"of":[20,30,75,130],"the":[21,40,110,128],"chain":[22],"can":[23,43],"be":[24,44],"considered":[25],"an":[27],"additional":[28,49],"feature":[29],"a":[31],"protein,":[32],"separate":[33],"from":[34],"secondary":[35],"and":[36,57,73,96,107],"tertiary":[37],"structures.":[38],"Moreover,":[39],"defined":[45],"also":[46,118],"one":[48],"structural":[50],"level.":[51],"The":[52,80,99,115],"LinkProt":[53],"database":[54,81,116],"(http://linkprot.cent.uw.edu.pl)":[55],"collects":[56],"displays":[58],"information":[59],"about":[60],"protein":[61],"links":[62,84,93],"-":[63],"non-trivial":[65],"structures":[66,100],"made":[67],"by":[68,89],"up":[69],"four":[71],"complexes":[74],"(e.g.":[77],"in":[78],"capsids).":[79],"presents":[82],"deterministic":[83],"(with":[85],"loops":[86],"closed,":[87],"e.g.":[88],"two":[90],"disulfide":[91],"bonds),":[92],"formed":[94],"probabilistically":[95],"macromolecular":[97],"links.":[98],"classified":[102],"according":[103],"their":[105],"presented":[108],"using":[109],"minimal":[111],"surface":[112],"area":[113],"method.":[114],"is":[117],"equipped":[119],"with":[120],"basic":[121],"tools":[122],"which":[123],"allow":[124],"users":[125],"analyze":[127],"arbitrary":[131],"(bio)polymers.":[132]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":7}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
