{"id":"https://openalex.org/W2369441267","doi":"https://doi.org/10.1093/nar/gkw415","title":"PASMet: a web-based platform for prediction, modelling and analyses of metabolic systems","display_name":"PASMet: a web-based platform for prediction, modelling and analyses of metabolic systems","publication_year":2016,"publication_date":"2016-05-12","ids":{"openalex":"https://openalex.org/W2369441267","doi":"https://doi.org/10.1093/nar/gkw415","mag":"2369441267","pmid":"https://pubmed.ncbi.nlm.nih.gov/27174940"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkw415","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw415","pdf_url":"https://academic.oup.com/nar/article-pdf/44/W1/W205/7634817/gkw415.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/44/W1/W205/7634817/gkw415.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055324647","display_name":"Kansuporn Sriyudthsak","orcid":null},"institutions":[{"id":"https://openalex.org/I4210100240","display_name":"RIKEN Center for Sustainable Resource Science","ror":"https://ror.org/010rf2m76","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210100240","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kansuporn Sriyudthsak","raw_affiliation_strings":["RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210100240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091223817","display_name":"Ramon Francisco Mejia","orcid":null},"institutions":[{"id":"https://openalex.org/I4210100240","display_name":"RIKEN Center for Sustainable Resource Science","ror":"https://ror.org/010rf2m76","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210100240","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Ramon Francisco Mejia","raw_affiliation_strings":["RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210100240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064001841","display_name":"Masanori Arita","orcid":"https://orcid.org/0000-0001-6706-0487"},"institutions":[{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I4210100240","display_name":"RIKEN Center for Sustainable Resource Science","ror":"https://ror.org/010rf2m76","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210100240","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masanori Arita","raw_affiliation_strings":["RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan","RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan","National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan","institution_ids":["https://openalex.org/I113198587","https://openalex.org/I4210100240"]},{"raw_affiliation_string":"RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210100240"]},{"raw_affiliation_string":"National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan","institution_ids":["https://openalex.org/I113198587"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038913847","display_name":"Masami Yokota Hirai","orcid":"https://orcid.org/0000-0003-0802-6208"},"institutions":[{"id":"https://openalex.org/I4210100240","display_name":"RIKEN Center for Sustainable Resource Science","ror":"https://ror.org/010rf2m76","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210100240","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Masami Yokota Hirai","raw_affiliation_strings":["RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan masami.hirai@riken.jp","RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan masami.hirai@riken.jp","institution_ids":["https://openalex.org/I4210100240"]},{"raw_affiliation_string":"RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210100240"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5038913847"],"corresponding_institution_ids":["https://openalex.org/I4210100240"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.1708,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.6313776,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"44","issue":"W1","first_page":"W205","last_page":"W211"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.9141415357589722},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7386534214019775},{"id":"https://openalex.org/keywords/login","display_name":"Login","score":0.7233726382255554},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5790403485298157},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.5565162897109985},{"id":"https://openalex.org/keywords/series","display_name":"Series (stratigraphy)","score":0.4429301619529724},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.43918517231941223},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4278642535209656},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.41495025157928467},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3507894277572632},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2856583297252655},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.2643318772315979},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.20136180520057678},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15337681770324707},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.13489726185798645}],"concepts":[{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.9141415357589722},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7386534214019775},{"id":"https://openalex.org/C113324615","wikidata":"https://www.wikidata.org/wiki/Q472302","display_name":"Login","level":2,"score":0.7233726382255554},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5790403485298157},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.5565162897109985},{"id":"https://openalex.org/C143724316","wikidata":"https://www.wikidata.org/wiki/Q312468","display_name":"Series (stratigraphy)","level":2,"score":0.4429301619529724},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.43918517231941223},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4278642535209656},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.41495025157928467},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3507894277572632},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2856583297252655},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.2643318772315979},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.20136180520057678},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15337681770324707},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.13489726185798645},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013294","descriptor_name":"Lactococcus lactis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013294","descriptor_name":"Lactococcus lactis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013294","descriptor_name":"Lactococcus lactis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013294","descriptor_name":"Lactococcus lactis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013294","descriptor_name":"Lactococcus lactis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013294","descriptor_name":"Lactococcus lactis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkw415","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw415","pdf_url":"https://academic.oup.com/nar/article-pdf/44/W1/W205/7634817/gkw415.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:27174940","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27174940","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:3952925","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4987946","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:nar:44/W1/W205","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/44/W1/W205","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/nar/gkw415","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw415","pdf_url":"https://academic.oup.com/nar/article-pdf/44/W1/W205/7634817/gkw415.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7813777413","display_name":"Elucidation of metabolic network underlying plant development","funder_award_id":"25113010","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320335125","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W151251252","https://openalex.org/W1502529406","https://openalex.org/W1581582023","https://openalex.org/W2011301426","https://openalex.org/W2022333738","https://openalex.org/W2027266940","https://openalex.org/W2038264484","https://openalex.org/W2042388195","https://openalex.org/W2043105642","https://openalex.org/W2059735278","https://openalex.org/W2063219876","https://openalex.org/W2065633939","https://openalex.org/W2067764620","https://openalex.org/W2075724417","https://openalex.org/W2078206056","https://openalex.org/W2084346085","https://openalex.org/W2095766238","https://openalex.org/W2110114082","https://openalex.org/W2118328021","https://openalex.org/W2125318412","https://openalex.org/W2132022337","https://openalex.org/W2134221731","https://openalex.org/W2136109194","https://openalex.org/W2136755623","https://openalex.org/W2146292423","https://openalex.org/W2160751597","https://openalex.org/W2165476125","https://openalex.org/W2178225550","https://openalex.org/W2181523240","https://openalex.org/W2330747075","https://openalex.org/W3005347330","https://openalex.org/W3097169496","https://openalex.org/W4285719527","https://openalex.org/W6685767691"],"related_works":["https://openalex.org/W4235220108","https://openalex.org/W4256170434","https://openalex.org/W4233948907","https://openalex.org/W4315650027","https://openalex.org/W4238894392","https://openalex.org/W2357607877","https://openalex.org/W4238771742","https://openalex.org/W4235839583","https://openalex.org/W4234342421","https://openalex.org/W2909040123"],"abstract_inverted_index":{"PASMet":[0,27,42,158,179],"(Prediction,":[1],"Analysis":[2,85],"and":[3,14,30,35,70,83,95,116,171,196],"Simulation":[4,79],"of":[5,22,26,46,53,65,75,80,86,110],"Metabolic":[6],"networks)":[7],"is":[8,180],"a":[9,44,66],"web-based":[10],"platform":[11],"for":[12],"proposing":[13],"verifying":[15],"mathematical":[16,40,76,96,154],"models":[17],"to":[18,37,48,131,175],"understand":[19],"the":[20,50,147,150],"dynamics":[21],"metabolism.":[23],"The":[24,56],"advantages":[25],"include":[28],"user-friendliness":[29],"accessibility,":[31],"which":[32],"enable":[33],"biologists":[34],"biochemists":[36],"easily":[38,115],"perform":[39],"modelling.":[41],"offers":[43],"series":[45],"user-functions":[47],"handle":[49],"time-series":[51,151],"data":[52,121,152],"metabolite":[54],"concentrations.":[55],"functions":[57],"are":[58,156],"organised":[59],"into":[60,146],"four":[61],"steps:":[62],"(i)":[63],"Prediction":[64],"probable":[67],"metabolic":[68,81,87],"pathway":[69],"its":[71],"regulation;":[72],"(ii)":[73],"Construction":[74],"models;":[77],"(iii)":[78],"behaviours;":[82],"(iv)":[84],"system":[88],"characteristics.":[89],"Each":[90],"function":[91],"contains":[92],"various":[93],"statistical":[94],"methods":[97],"that":[98],"can":[99,114,166],"be":[100],"used":[101],"independently.":[102],"Users":[103,128],"who":[104],"may":[105],"not":[106],"have":[107],"enough":[108],"knowledge":[109],"computing":[111],"or":[112,126,140,153],"programming":[113],"quickly":[117],"analyse":[118],"their":[119,133,142,169,176],"local":[120,177],"without":[122],"software":[123],"downloads,":[124],"updates":[125],"installations.":[127],"only":[129],"need":[130],"upload":[132],"files":[134],"in":[135],"comma-separated":[136],"values":[137],"(CSV)":[138],"format":[139],"enter":[141],"model":[143],"equations":[144,155],"directly":[145,172],"website.":[148],"Once":[149],"uploaded,":[157],"automatically":[159],"performs":[160],"computation":[161],"on":[162,193],"server-side.":[163],"Then,":[164],"users":[165],"interactively":[167],"view":[168],"results":[170],"download":[173],"them":[174],"computers.":[178],"freely":[181],"available":[182],"with":[183],"no":[184],"login":[185],"requirement":[186],"at":[187],"http://pasmet.riken.jp/":[188],"from":[189],"major":[190],"web":[191],"browsers":[192],"Windows,":[194],"Mac":[195],"Linux":[197],"operating":[198],"systems.":[199]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-07-09T07:52:08.696243","created_date":"2025-10-10T00:00:00"}
