{"id":"https://openalex.org/W2345727655","doi":"https://doi.org/10.1093/nar/gkw330","title":"SimpleSynteny: a web-based tool for visualization of microsynteny across multiple species","display_name":"SimpleSynteny: a web-based tool for visualization of microsynteny across multiple species","publication_year":2016,"publication_date":"2016-05-03","ids":{"openalex":"https://openalex.org/W2345727655","doi":"https://doi.org/10.1093/nar/gkw330","mag":"2345727655","pmid":"https://pubmed.ncbi.nlm.nih.gov/27141960"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkw330","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw330","pdf_url":"https://academic.oup.com/nar/article-pdf/44/W1/W41/18787643/gkw330.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/44/W1/W41/18787643/gkw330.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044587037","display_name":"Daniel Veltri","orcid":"https://orcid.org/0000-0002-6101-6693"},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Veltri","raw_affiliation_strings":["Systematic Mycology and Microbiology Laboratory, U.S. Department of Agriculture (USDA), Agricultural Research Service (ARS), 10300 Baltimore Avenue, Building 10A, Beltsville, MD 20705, USA Oak Ridge Institute for Science and Education ARS Research Program, MC-100-44 P.O. Box 117, Oak Ridge, TN 37831, USA"],"raw_orcid":"https://orcid.org/0000-0002-6101-6693","affiliations":[{"raw_affiliation_string":"Systematic Mycology and Microbiology Laboratory, U.S. Department of Agriculture (USDA), Agricultural Research Service (ARS), 10300 Baltimore Avenue, Building 10A, Beltsville, MD 20705, USA Oak Ridge Institute for Science and Education ARS Research Program, MC-100-44 P.O. Box 117, Oak Ridge, TN 37831, USA","institution_ids":["https://openalex.org/I1312222531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088430298","display_name":"Martha Malapi Wight","orcid":null},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I4210125976","display_name":"Beltsville Agricultural Research Center","ror":"https://ror.org/03b08sh51","country_code":"US","type":"facility","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210125976","https://openalex.org/I4210138094"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martha Malapi Wight","raw_affiliation_strings":["Systematic Mycology and Microbiology Laboratory, U.S. Department of Agriculture (USDA), Agricultural Research Service (ARS), 10300 Baltimore Avenue, Building 10A, Beltsville, MD 20705, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systematic Mycology and Microbiology Laboratory, U.S. Department of Agriculture (USDA), Agricultural Research Service (ARS), 10300 Baltimore Avenue, Building 10A, Beltsville, MD 20705, USA","institution_ids":["https://openalex.org/I4210125976","https://openalex.org/I1312222531","https://openalex.org/I1336096307"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075548435","display_name":"Jo Anne Crouch","orcid":"https://orcid.org/0000-0001-6886-8090"},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I4210125976","display_name":"Beltsville Agricultural Research Center","ror":"https://ror.org/03b08sh51","country_code":"US","type":"facility","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210125976","https://openalex.org/I4210138094"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jo Anne Crouch","raw_affiliation_strings":["Systematic Mycology and Microbiology Laboratory, U.S. Department of Agriculture (USDA), Agricultural Research Service (ARS), 10300 Baltimore Avenue, Building 10A, Beltsville, MD 20705, USA joanne.crouch@ars.usda.gov"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systematic Mycology and Microbiology Laboratory, U.S. Department of Agriculture (USDA), Agricultural Research Service (ARS), 10300 Baltimore Avenue, Building 10A, Beltsville, MD 20705, USA joanne.crouch@ars.usda.gov","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I4210125976"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.9547,"has_fulltext":false,"cited_by_count":144,"citation_normalized_percentile":{"value":0.95602483,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"44","issue":"W1","first_page":"W41","last_page":"W45"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/synteny","display_name":"Synteny","score":0.9441872835159302},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7514560222625732},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7387688159942627},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.6114807724952698},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5397298336029053},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5358966588973999},{"id":"https://openalex.org/keywords/orthologous-gene","display_name":"Orthologous Gene","score":0.506874144077301},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.46027040481567383},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4453392028808594},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.443970263004303},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.41188615560531616},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3406732380390167},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3308175802230835},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.28771212697029114},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2748264670372009},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.16410788893699646},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.0871289074420929}],"concepts":[{"id":"https://openalex.org/C53702515","wikidata":"https://www.wikidata.org/wiki/Q971246","display_name":"Synteny","level":4,"score":0.9441872835159302},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7514560222625732},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7387688159942627},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.6114807724952698},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5397298336029053},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5358966588973999},{"id":"https://openalex.org/C2909108991","wikidata":"https://www.wikidata.org/wiki/Q414601","display_name":"Orthologous Gene","level":4,"score":0.506874144077301},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.46027040481567383},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4453392028808594},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.443970263004303},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.41188615560531616},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3406732380390167},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3308175802230835},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.28771212697029114},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2748264670372009},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.16410788893699646},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0871289074420929}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001230","descriptor_name":"Aspergillus","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001230","descriptor_name":"Aspergillus","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001230","descriptor_name":"Aspergillus","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001230","descriptor_name":"Aspergillus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001230","descriptor_name":"Aspergillus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001230","descriptor_name":"Aspergillus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005670","descriptor_name":"Fusarium","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D005670","descriptor_name":"Fusarium","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D005670","descriptor_name":"Fusarium","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D005670","descriptor_name":"Fusarium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005670","descriptor_name":"Fusarium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005670","descriptor_name":"Fusarium","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D014242","descriptor_name":"Trichoderma","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014242","descriptor_name":"Trichoderma","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014242","descriptor_name":"Trichoderma","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014242","descriptor_name":"Trichoderma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014242","descriptor_name":"Trichoderma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014242","descriptor_name":"Trichoderma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020231","descriptor_name":"Colletotrichum","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D020231","descriptor_name":"Colletotrichum","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D020231","descriptor_name":"Colletotrichum","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D020231","descriptor_name":"Colletotrichum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020231","descriptor_name":"Colletotrichum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020231","descriptor_name":"Colletotrichum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkw330","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw330","pdf_url":"https://academic.oup.com/nar/article-pdf/44/W1/W41/18787643/gkw330.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:27141960","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27141960","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:3952878","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4987899","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:nar:44/W1/W41","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/44/W1/W41","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/nar/gkw330","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw330","pdf_url":"https://academic.oup.com/nar/article-pdf/44/W1/W41/18787643/gkw330.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1964612763","https://openalex.org/W1990095531","https://openalex.org/W2002833133","https://openalex.org/W2003266704","https://openalex.org/W2033203401","https://openalex.org/W2067644347","https://openalex.org/W2086433285","https://openalex.org/W2106208020","https://openalex.org/W2108565529","https://openalex.org/W2126423997","https://openalex.org/W2128567635","https://openalex.org/W2131180151","https://openalex.org/W2138445042","https://openalex.org/W2144272188","https://openalex.org/W2158714788","https://openalex.org/W2179444328"],"related_works":["https://openalex.org/W2155064619","https://openalex.org/W2121479060","https://openalex.org/W2080500198","https://openalex.org/W2184275941","https://openalex.org/W2571897395","https://openalex.org/W2047144846","https://openalex.org/W2117959411","https://openalex.org/W4322421693","https://openalex.org/W158935306","https://openalex.org/W4295013818"],"abstract_inverted_index":{"Defining":[0],"syntenic":[1],"relationships":[2],"among":[3],"orthologous":[4],"gene":[5,82,181],"clusters":[6],"is":[7,34,137,191],"a":[8,35,49,66,71,78,130,177],"frequent":[9],"undertaking":[10],"of":[11,24,42,54,58,77,81,109,120,147,187],"biologists":[12],"studying":[13],"organismal":[14,86],"evolution":[15],"through":[16,29,116],"comparative":[17],"genomic":[18,60],"approaches.":[19],"With":[20],"the":[21,75,114,135,141,145,162,171],"increasing":[22],"availability":[23],"genome":[25,178],"data":[26],"made":[27],"possible":[28],"next-generation":[30],"sequencing":[31],"technology,":[32],"there":[33],"growing":[36],"need":[37],"for":[38,73,104],"user-friendly":[39],"tools":[40,166],"capable":[41,53],"assessing":[43],"synteny.":[44],"Here":[45],"we":[46],"present":[47],"SimpleSynteny,":[48],"new":[50],"web-based":[51],"platform":[52],"directly":[55],"interrogating":[56],"collinearity":[57],"local":[59],"neighbors":[61],"across":[62,84],"multiple":[63,85,148],"species":[64],"in":[65,176],"targeted":[67],"manner.":[68],"SimpleSynteny":[69,111,190],"provides":[70],"pipeline":[72],"evaluating":[74],"synteny":[76],"preselected":[79],"set":[80],"targets":[83,182],"genomes.":[87,189],"An":[88],"emphasis":[89],"has":[90],"been":[91],"placed":[92],"on":[93,161],"ease-of-use,":[94],"and":[95,107,122,150,183],"users":[96],"are":[97,167],"only":[98],"required":[99],"to":[100,143,169,184],"submit":[101],"FASTA":[102],"files":[103],"their":[105],"genomes":[106,124],"genes":[108],"interest.":[110],"then":[112],"guides":[113],"user":[115,142,172],"an":[117],"iterative":[118],"process":[119,136],"exploring":[121],"customizing":[123],"individually":[125],"before":[126],"combining":[127],"them":[128],"into":[129],"final":[131],"high-resolution":[132],"figure.":[133],"Because":[134],"iterative,":[138],"it":[139],"allows":[140],"customize":[144],"organization":[146],"contigs":[149,175],"incorporate":[151],"knowledge":[152],"from":[153],"additional":[154],"sources,":[155],"rather":[156],"than":[157],"forcing":[158],"complete":[159],"dependence":[160],"computational":[163],"predictions.":[164],"Additional":[165],"provided":[168],"help":[170],"identify":[173],"which":[174],"assembly":[179],"contain":[180],"optimize":[185],"analyses":[186],"circular":[188],"freely":[192],"available":[193],"at:":[194],"http://www.SimpleSynteny.com.":[195]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":20},{"year":2021,"cited_by_count":27},{"year":2020,"cited_by_count":18},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":11}],"updated_date":"2026-07-08T08:33:18.762332","created_date":"2025-10-10T00:00:00"}