{"id":"https://openalex.org/W2336797199","doi":"https://doi.org/10.1093/nar/gkw254","title":"MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identification","display_name":"MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identification","publication_year":2016,"publication_date":"2016-04-15","ids":{"openalex":"https://openalex.org/W2336797199","doi":"https://doi.org/10.1093/nar/gkw254","mag":"2336797199","pmid":"https://pubmed.ncbi.nlm.nih.gov/27084943"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkw254","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw254","pdf_url":"https://academic.oup.com/nar/article-pdf/44/W1/W575/18787152/gkw254.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/44/W1/W575/18787152/gkw254.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086436405","display_name":"T. Mamie Lih","orcid":"https://orcid.org/0000-0002-5431-3948"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"T. Mamie Lih","raw_affiliation_strings":["Bioinformatics Program, Taiwan International Graduate Program, Academia Sinica, Taipei 11529, Taiwan Institute of Information Science, Academia Sinica, Taipei 11529, Taiwan Institute of Biomedical Informatics, National Yang-Ming University, Taipei 11221, Taiwan"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Program, Taiwan International Graduate Program, Academia Sinica, Taipei 11529, Taiwan Institute of Information Science, Academia Sinica, Taipei 11529, Taiwan Institute of Biomedical Informatics, National Yang-Ming University, Taipei 11221, Taiwan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062181297","display_name":"Wai-Kok Choong","orcid":"https://orcid.org/0000-0001-6883-6865"},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Wai-Kok Choong","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Taipei 11529, Taiwan"],"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei 11529, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112098585","display_name":"Chen-Chun Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chen-Chun Chen","raw_affiliation_strings":["Genomics Research Center, Academia Sinica, Taipei 11529, Taiwan Department of Chemistry, National Taiwan University, Taipei 10617, Taiwan","Institute of Information Science, Academia Sinica, Taipei 11529, Taiwan"],"affiliations":[{"raw_affiliation_string":"Genomics Research Center, Academia Sinica, Taipei 11529, Taiwan Department of Chemistry, National Taiwan University, Taipei 10617, Taiwan","institution_ids":[]},{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei 11529, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091173337","display_name":"Cheng\u2010Wei Cheng","orcid":"https://orcid.org/0000-0003-3491-8920"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cheng-Wei Cheng","raw_affiliation_strings":["Bioinformatics Program, Taiwan International Graduate Program, Academia Sinica, Taipei 11529, Taiwan Institute of Information Science, Academia Sinica, Taipei 11529, Taiwan Institute of Biomedical Informatics, National Yang-Ming University, Taipei 11221, Taiwan"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Program, Taiwan International Graduate Program, Academia Sinica, Taipei 11529, Taiwan Institute of Information Science, Academia Sinica, Taipei 11529, Taiwan Institute of Biomedical Informatics, National Yang-Ming University, Taipei 11221, Taiwan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073696674","display_name":"Hsin-Nan Lin","orcid":"https://orcid.org/0000-0001-7225-7161"},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Hsin-Nan Lin","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Taipei 11529, Taiwan"],"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei 11529, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070602673","display_name":"Ching-Tai Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Ching-Tai Chen","raw_affiliation_strings":["Genomics Research Center, Academia Sinica, Taipei 11529, Taiwan Department of Chemistry, National Taiwan University, Taipei 10617, Taiwan","Institute of Information Science, Academia Sinica, Taipei 11529, Taiwan"],"affiliations":[{"raw_affiliation_string":"Genomics Research Center, Academia Sinica, Taipei 11529, Taiwan Department of Chemistry, National Taiwan University, Taipei 10617, Taiwan","institution_ids":[]},{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei 11529, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013744415","display_name":"Hui-Yin Chang","orcid":"https://orcid.org/0000-0003-1767-1874"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hui-Yin Chang","raw_affiliation_strings":["Bioinformatics Program, Taiwan International Graduate Program, Academia Sinica, Taipei 11529, Taiwan Institute of Information Science, Academia Sinica, Taipei 11529, Taiwan Institute of Biomedical Informatics, National Yang-Ming University, Taipei 11221, Taiwan"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Program, Taiwan International Graduate Program, Academia Sinica, Taipei 11529, Taiwan Institute of Information Science, Academia Sinica, Taipei 11529, Taiwan Institute of Biomedical Informatics, National Yang-Ming University, Taipei 11221, Taiwan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112054430","display_name":"Wen-Lian Hsu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Wen-Lian Hsu","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Taipei 11529, Taiwan"],"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei 11529, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110550270","display_name":"Ting-Yi Sung","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ting-Yi Sung","raw_affiliation_strings":["Institute of Information Science, Academia Sinica, Taipei 11529, Taiwan tsung@iis.sinica.edu.tw"],"affiliations":[{"raw_affiliation_string":"Institute of Information Science, Academia Sinica, Taipei 11529, Taiwan tsung@iis.sinica.edu.tw","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5086436405"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.2184,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.79968977,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"44","issue":"W1","first_page":"W575","last_page":"W580"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10835","display_name":"Carbohydrate Chemistry and Synthesis","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/glycan","display_name":"Glycan","score":0.7383053302764893},{"id":"https://openalex.org/keywords/magic","display_name":"MAGIC (telescope)","score":0.6060526967048645},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49858927726745605},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4956279993057251},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.48908549547195435},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47065868973731995},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.4675254821777344},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3285772204399109},{"id":"https://openalex.org/keywords/glycoprotein","display_name":"Glycoprotein","score":0.2852790057659149},{"id":"https://openalex.org/keywords/molecular-biology","display_name":"Molecular biology","score":0.21013674139976501},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20447927713394165},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16636991500854492},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.11814939975738525}],"concepts":[{"id":"https://openalex.org/C206212055","wikidata":"https://www.wikidata.org/wiki/Q2553138","display_name":"Glycan","level":3,"score":0.7383053302764893},{"id":"https://openalex.org/C2777704519","wikidata":"https://www.wikidata.org/wiki/Q45732","display_name":"MAGIC (telescope)","level":2,"score":0.6060526967048645},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49858927726745605},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4956279993057251},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.48908549547195435},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47065868973731995},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.4675254821777344},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3285772204399109},{"id":"https://openalex.org/C108625454","wikidata":"https://www.wikidata.org/wiki/Q187126","display_name":"Glycoprotein","level":2,"score":0.2852790057659149},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.21013674139976501},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20447927713394165},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16636991500854492},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.11814939975738525},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006020","descriptor_name":"Glycopeptides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D006020","descriptor_name":"Glycopeptides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D006020","descriptor_name":"Glycopeptides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D006020","descriptor_name":"Glycopeptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006020","descriptor_name":"Glycopeptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006020","descriptor_name":"Glycopeptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006023","descriptor_name":"Glycoproteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D006023","descriptor_name":"Glycoproteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D006023","descriptor_name":"Glycoproteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D006023","descriptor_name":"Glycoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006023","descriptor_name":"Glycoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006023","descriptor_name":"Glycoproteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkw254","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw254","pdf_url":"https://academic.oup.com/nar/article-pdf/44/W1/W575/18787152/gkw254.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:27084943","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27084943","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:3952852","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4987873","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:nar:44/W1/W575","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/44/W1/W575","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/nar/gkw254","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw254","pdf_url":"https://academic.oup.com/nar/article-pdf/44/W1/W575/18787152/gkw254.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2336797199.pdf","grobid_xml":"https://content.openalex.org/works/W2336797199.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1418224","https://openalex.org/W1549345436","https://openalex.org/W1990147844","https://openalex.org/W2003856336","https://openalex.org/W2007058937","https://openalex.org/W2009117616","https://openalex.org/W2019583094","https://openalex.org/W2024186981","https://openalex.org/W2024191848","https://openalex.org/W2028062152","https://openalex.org/W2052644289","https://openalex.org/W2069002537","https://openalex.org/W2075295969","https://openalex.org/W2083299750","https://openalex.org/W2085278206","https://openalex.org/W2154438952","https://openalex.org/W2168401402","https://openalex.org/W2295106227","https://openalex.org/W2314990510","https://openalex.org/W2325899314"],"related_works":["https://openalex.org/W24553703","https://openalex.org/W4211000692","https://openalex.org/W4212920271","https://openalex.org/W2612240612","https://openalex.org/W4324018414","https://openalex.org/W4211208250","https://openalex.org/W4211054902","https://openalex.org/W2170381940","https://openalex.org/W2472351724","https://openalex.org/W3145366215"],"abstract_inverted_index":{"MAGIC-web":[0,134,195],"is":[1,45,148,196],"the":[2,7,99,121,151,183,193],"first":[3,30],"web":[4],"server,":[5],"to":[6,80,87,105,135],"best":[8],"of":[9,19,65,97,123,166],"our":[10,48],"knowledge,":[11],"that":[12,76],"performs":[13],"both":[14],"untargeted":[15,39],"and":[16,34,40,60,67,69,130,164,173,186],"targeted":[17,41],"analyses":[18],"mass":[20],"spectrometry-based":[21],"glycoproteomics":[22],"data":[23],"for":[24,38,150],"site-specific":[25,139],"N-linked":[26],"glycoprotein":[27],"identification.":[28],"The":[29,115,143,168],"two":[31],"modules,":[32],"MAGIC":[33,44],"MAGIC+,":[35],"are":[36,154],"designed":[37,149],"analysis,":[42],"respectively.":[43],"implemented":[46,101],"with":[47,161],"previously":[49],"proposed":[50],"novel":[51],"Y1-ion":[52],"pattern":[53],"matching":[54],"method,":[55],"which":[56],"adequately":[57],"detects":[58],"Y1-":[59],"Y0-ion":[61],"without":[62],"prior":[63],"information":[64,132],"proteins":[66],"glycans,":[68],"then":[70],"generates":[71],"in":[72,156,192],"silico":[73],"MS(2)":[74],"spectra":[75,185],"serve":[77],"as":[78],"input":[79],"a":[81,90,137],"database":[82],"search":[83,88],"engine":[84],"(e.g.":[85],"Mascot)":[86],"against":[89],"large-scale":[91],"protein":[92,112,125],"sequence":[93,113],"database.":[94],"On":[95],"top":[96],"that,":[98],"newly":[100],"MAGIC+":[102,172],"allows":[103],"users":[104,152],"determine":[106],"glycopeptide":[107],"sequences":[108],"using":[109],"their":[110],"own":[111],"file.":[114],"third":[116],"module,":[117,145],"Reports":[118,174],"Integrator,":[119],"provides":[120],"service":[122],"combining":[124],"identification":[126],"results":[127,169],"from":[128,133,170,198],"Mascot":[129],"glycan-related":[131],"generate":[136],"complete":[138],"protein-glycan":[140],"summary":[141],"report.":[142],"last":[144],"Glycan":[146],"Search,":[147],"who":[153],"interested":[155],"finding":[157],"possible":[158],"glycan":[159,187],"structures":[160,188],"specific":[162],"numbers":[163],"types":[165],"monosaccharides.":[167],"MAGIC,":[171],"Integrator":[175],"can":[176,189],"be":[177,190],"downloaded":[178],"via":[179],"provided":[180],"links":[181],"whereas":[182],"annotated":[184],"visualized":[191],"browser.":[194],"accessible":[197],"http://ms.iis.sinica.edu.tw/MAGIC-web/index.html.":[199]},"counts_by_year":[{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
