{"id":"https://openalex.org/W2559738700","doi":"https://doi.org/10.1093/nar/gkw1137","title":"ECOD: new developments in the evolutionary classification of domains","display_name":"ECOD: new developments in the evolutionary classification of domains","publication_year":2016,"publication_date":"2016-11-16","ids":{"openalex":"https://openalex.org/W2559738700","doi":"https://doi.org/10.1093/nar/gkw1137","mag":"2559738700","pmid":"https://pubmed.ncbi.nlm.nih.gov/27899594"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkw1137","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1137","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D296/8846975/gkw1137.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/45/D1/D296/8846975/gkw1137.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025471816","display_name":"R. Dustin Schaeffer","orcid":"https://orcid.org/0000-0001-6502-1425"},"institutions":[{"id":"https://openalex.org/I4210096815","display_name":"Southwestern Medical Center","ror":"https://ror.org/00t9vx427","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210096815"]},{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"R. Dustin Schaeffer","raw_affiliation_strings":["Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390-9050, USA Richard.Schaeffer@UTSouthwestern.edu","Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390-9050, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390-9050, USA Richard.Schaeffer@UTSouthwestern.edu","institution_ids":["https://openalex.org/I4210096815","https://openalex.org/I867280407"]},{"raw_affiliation_string":"Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390-9050, USA","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061738557","display_name":"Yuxing Liao","orcid":"https://orcid.org/0000-0002-1238-2021"},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuxing Liao","raw_affiliation_strings":["Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390-9050, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390-9050, USA","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014351098","display_name":"Hua Cheng","orcid":"https://orcid.org/0000-0002-0079-8820"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I4210096815","display_name":"Southwestern Medical Center","ror":"https://ror.org/00t9vx427","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210096815"]},{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hua Cheng","raw_affiliation_strings":["Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, TX 75390-9050, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, TX 75390-9050, USA","institution_ids":["https://openalex.org/I1344073410","https://openalex.org/I4210096815","https://openalex.org/I867280407"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108096094","display_name":"Nick V. Grishin","orcid":null},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I4210096815","display_name":"Southwestern Medical Center","ror":"https://ror.org/00t9vx427","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210096815"]},{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nick V. Grishin","raw_affiliation_strings":["Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390-9050, USA","Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, TX 75390-9050, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390-9050, USA","institution_ids":["https://openalex.org/I867280407"]},{"raw_affiliation_string":"Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, TX 75390-9050, USA","institution_ids":["https://openalex.org/I1344073410","https://openalex.org/I4210096815","https://openalex.org/I867280407"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5025471816"],"corresponding_institution_ids":["https://openalex.org/I4210096815","https://openalex.org/I867280407"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.8481,"has_fulltext":true,"cited_by_count":99,"citation_normalized_percentile":{"value":0.93983644,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"45","issue":"D1","first_page":"D296","last_page":"D302"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7382975816726685},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.6225370764732361},{"id":"https://openalex.org/keywords/protein-superfamily","display_name":"Protein superfamily","score":0.5636965036392212},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4918653964996338},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.470415860414505},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44836848974227905},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3630369305610657},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3310418128967285},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.2624761462211609},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22682562470436096},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20724323391914368},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1675506830215454}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7382975816726685},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.6225370764732361},{"id":"https://openalex.org/C178180057","wikidata":"https://www.wikidata.org/wiki/Q7251477","display_name":"Protein superfamily","level":3,"score":0.5636965036392212},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4918653964996338},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.470415860414505},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44836848974227905},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3630369305610657},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3310418128967285},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.2624761462211609},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22682562470436096},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20724323391914368},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1675506830215454},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkw1137","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1137","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D296/8846975/gkw1137.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:27899594","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27899594","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:nar:45/D1/D296","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/45/D1/D296","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:5210594","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkw1137","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkw1137","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1137","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D296/8846975/gkw1137.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3368261749","display_name":null,"funder_award_id":"R01 GM094575","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G571576816","display_name":null,"funder_award_id":"GM094575","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2559738700.pdf","grobid_xml":"https://content.openalex.org/works/W2559738700.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1601330165","https://openalex.org/W1964333133","https://openalex.org/W1965827393","https://openalex.org/W1975874422","https://openalex.org/W1996993889","https://openalex.org/W2007732687","https://openalex.org/W2011703027","https://openalex.org/W2017727500","https://openalex.org/W2031901496","https://openalex.org/W2039175603","https://openalex.org/W2055043387","https://openalex.org/W2067134743","https://openalex.org/W2102245393","https://openalex.org/W2102461176","https://openalex.org/W2104846587","https://openalex.org/W2124675604","https://openalex.org/W2128653811","https://openalex.org/W2137597742","https://openalex.org/W2142678478","https://openalex.org/W2143205611","https://openalex.org/W2145268834","https://openalex.org/W2147199176","https://openalex.org/W2150790075","https://openalex.org/W2157122545","https://openalex.org/W2164648147","https://openalex.org/W2175963012","https://openalex.org/W2220051469","https://openalex.org/W2224056471","https://openalex.org/W2285068092","https://openalex.org/W2340335297","https://openalex.org/W2521298622","https://openalex.org/W3145289798","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W2088162897","https://openalex.org/W2020669016","https://openalex.org/W2090630809","https://openalex.org/W2106612397","https://openalex.org/W4387804157","https://openalex.org/W2518314460","https://openalex.org/W2401430279","https://openalex.org/W2119891507","https://openalex.org/W2951367335","https://openalex.org/W2803843415"],"abstract_inverted_index":{"Evolutionary":[0],"Classification":[1],"Of":[2],"protein":[3,9,25],"Domains":[4],"(ECOD)":[5],"(http://prodata.swmed.edu/ecod)":[6],"comprehensively":[7],"classifies":[8,51],"with":[10,45],"known":[11],"spatial":[12],"structures":[13,97],"maintained":[14],"by":[15],"the":[16,52,58,72,75,80,87,106,112,122],"Protein":[17],"Data":[18],"Bank":[19],"(PDB)":[20],"into":[21,60],"evolutionary":[22],"groups":[23,100],"of":[24,32,57,74,82,115],"domains.":[26],"ECOD":[27,50,88,116],"relies":[28],"on":[29],"a":[30,46],"combination":[31],"automatic":[33],"and":[34,43,90,94,98,117,124],"manual":[35],"weekly":[36,76],"updates":[37],"to":[38,86],"achieve":[39],"its":[40],"high":[41],"accuracy":[42],"coverage":[44],"short":[47],"update":[48,77,125],"cycle.":[49],"approximately":[53],"120":[54],"000":[55,64],"depositions":[56],"PDB":[59],"more":[61],"than":[62],"500":[63],"domains":[65],"in":[66,105],"\u223c3400":[67],"homologous":[68,99],"groups.":[69],"We":[70],"show":[71],"performance":[73],"pipeline":[78],"since":[79],"release":[81],"ECOD,":[83],"describe":[84],"improvements":[85,119],"website":[89],"available":[91],"search":[92],"options,":[93],"discuss":[95,111],"novel":[96],"that":[101],"have":[102],"been":[103],"classified":[104],"recent":[107],"updates.":[108],"Finally,":[109],"we":[110],"future":[113],"directions":[114],"further":[118],"planned":[120],"for":[121],"hierarchy":[123],"process.":[126]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":5}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
