{"id":"https://openalex.org/W2558945136","doi":"https://doi.org/10.1093/nar/gkw1136","title":"RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures","display_name":"RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures","publication_year":2016,"publication_date":"2016-10-31","ids":{"openalex":"https://openalex.org/W2558945136","doi":"https://doi.org/10.1093/nar/gkw1136","mag":"2558945136","pmid":"https://pubmed.ncbi.nlm.nih.gov/27899671"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkw1136","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1136","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D308/8846970/gkw1136.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/45/D1/D308/8846970/gkw1136.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056593148","display_name":"Lisanna Paladin","orcid":"https://orcid.org/0000-0003-0011-9397"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Lisanna Paladin","raw_affiliation_strings":["Dept. of Biomedical Sciences, University of Padua, 35121 Padova, Italy","Universit\u00e0 degli Studi di Padova = University of Padua"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Biomedical Sciences, University of Padua, 35121 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]},{"raw_affiliation_string":"Universit\u00e0 degli Studi di Padova = University of Padua","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002583364","display_name":"Layla Hirsh","orcid":"https://orcid.org/0000-0002-8215-6716"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]},{"id":"https://openalex.org/I65285256","display_name":"Pontificia Universidad Cat\u00f3lica del Per\u00fa","ror":"https://ror.org/00013q465","country_code":"PE","type":"education","lineage":["https://openalex.org/I65285256"]}],"countries":["IT","PE"],"is_corresponding":false,"raw_author_name":"Layla Hirsh","raw_affiliation_strings":["Departamento de Ingenier\u00eda, Pontificia Universidad Cat\u00f3lica del Per\u00fa, 32 Lima, Per\u00fa","Dept. of Biomedical Sciences, University of Padua, 35121 Padova, Italy","Pontificia Universidad Cat\u00f3lica del Per\u00fa =  Pontifical Catholic University of Peru","Universit\u00e0 degli Studi di Padova = University of Padua"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Ingenier\u00eda, Pontificia Universidad Cat\u00f3lica del Per\u00fa, 32 Lima, Per\u00fa","institution_ids":["https://openalex.org/I65285256"]},{"raw_affiliation_string":"Dept. of Biomedical Sciences, University of Padua, 35121 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]},{"raw_affiliation_string":"Pontificia Universidad Cat\u00f3lica del Per\u00fa =  Pontifical Catholic University of Peru","institution_ids":["https://openalex.org/I65285256"]},{"raw_affiliation_string":"Universit\u00e0 degli Studi di Padova = University of Padua","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000882827","display_name":"Damiano Piovesan","orcid":"https://orcid.org/0000-0001-8210-2390"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Damiano Piovesan","raw_affiliation_strings":["Dept. of Biomedical Sciences, University of Padua, 35121 Padova, Italy","Universit\u00e0 degli Studi di Padova = University of Padua"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Biomedical Sciences, University of Padua, 35121 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]},{"raw_affiliation_string":"Universit\u00e0 degli Studi di Padova = University of Padua","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010178662","display_name":"Miguel A. Andrade\u2010Navarro","orcid":"https://orcid.org/0000-0001-6650-1711"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I4210165538","display_name":"Institute of Molecular Biology","ror":"https://ror.org/05kxtq558","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210165538"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Miguel A. Andrade-Navarro","raw_affiliation_strings":["Institute of Molecular Biology, Faculty of Biology, Johannes Gutenberg University of Mainz, 55128 Mainz, Germany","Johannes Gutenberg - Universit\u00e4t Mainz = Johannes Gutenberg University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Biology, Faculty of Biology, Johannes Gutenberg University of Mainz, 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543","https://openalex.org/I4210165538"]},{"raw_affiliation_string":"Johannes Gutenberg - Universit\u00e4t Mainz = Johannes Gutenberg University","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048846433","display_name":"Andrey V. Kajava","orcid":"https://orcid.org/0000-0002-2342-6886"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I173089394","display_name":"ITMO University","ror":"https://ror.org/04txgxn49","country_code":"RU","type":"education","lineage":["https://openalex.org/I173089394"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210113016","display_name":"Centre de Recherche en Biologie cellulaire de Montpellier","ror":"https://ror.org/01xpc6869","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210096427","https://openalex.org/I4210113016"]}],"countries":["FR","RU"],"is_corresponding":false,"raw_author_name":"Andrey V. Kajava","raw_affiliation_strings":["Centre de Recherches de Biochimie Macromol\u00e9culaire, CNRS, Universit\u00e9 Montpellier, 34293 Montpellier, France","Institut de Biologie Computationnelle (IBC), 34293 Montpellier, France","Institute of Bioengineering, University ITMO, 197101 St. Petersburg, Russia","Centre de recherche en Biologie cellulaire de Montpellier","Institut de Biologie Computationnelle","ITMO University [Russia]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre de Recherches de Biochimie Macromol\u00e9culaire, CNRS, Universit\u00e9 Montpellier, 34293 Montpellier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210113016"]},{"raw_affiliation_string":"Institut de Biologie Computationnelle (IBC), 34293 Montpellier, France","institution_ids":[]},{"raw_affiliation_string":"Institute of Bioengineering, University ITMO, 197101 St. Petersburg, Russia","institution_ids":["https://openalex.org/I173089394"]},{"raw_affiliation_string":"Centre de recherche en Biologie cellulaire de Montpellier","institution_ids":[]},{"raw_affiliation_string":"Institut de Biologie Computationnelle","institution_ids":[]},{"raw_affiliation_string":"ITMO University [Russia]","institution_ids":["https://openalex.org/I173089394"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066560665","display_name":"Silvio C. E. Tosatto","orcid":"https://orcid.org/0000-0003-4525-7793"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]},{"id":"https://openalex.org/I4210113153","display_name":"Neuroscience Institute","ror":"https://ror.org/0240rwx68","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210113153","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Silvio C.E. Tosatto","raw_affiliation_strings":["CNR Institute of Neuroscience, 35121 Padova, Italy","Dept. of Biomedical Sciences, University of Padua, 35121 Padova, Italy silvio.tosatto@unipd.it","Universit\u00e0 degli Studi di Padova = University of Padua"],"raw_orcid":"https://orcid.org/0000-0003-4525-7793","affiliations":[{"raw_affiliation_string":"CNR Institute of Neuroscience, 35121 Padova, Italy","institution_ids":["https://openalex.org/I4210113153"]},{"raw_affiliation_string":"Dept. of Biomedical Sciences, University of Padua, 35121 Padova, Italy silvio.tosatto@unipd.it","institution_ids":["https://openalex.org/I138689650"]},{"raw_affiliation_string":"Universit\u00e0 degli Studi di Padova = University of Padua","institution_ids":["https://openalex.org/I138689650"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5066560665"],"corresponding_institution_ids":["https://openalex.org/I138689650","https://openalex.org/I4210113153"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.6279,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.89545732,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"45","issue":"D1","first_page":"D308","last_page":"D312"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10949","display_name":"Genetic Neurodegenerative Diseases","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10949","display_name":"Genetic Neurodegenerative Diseases","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6676673889160156},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5832193493843079},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4868027865886688},{"id":"https://openalex.org/keywords/structural-classification-of-proteins-database","display_name":"Structural Classification of Proteins database","score":0.482177197933197},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.480996698141098},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47176221013069153},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.47022247314453125},{"id":"https://openalex.org/keywords/tandem-repeat","display_name":"Tandem repeat","score":0.4649810492992401},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.44849443435668945},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4358243942260742},{"id":"https://openalex.org/keywords/protein-structure-database","display_name":"Protein structure database","score":0.41874590516090393},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32700809836387634},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3098476529121399},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.2875104546546936},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.22803378105163574},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.2129306197166443},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15778642892837524}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6676673889160156},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5832193493843079},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4868027865886688},{"id":"https://openalex.org/C58773245","wikidata":"https://www.wikidata.org/wiki/Q4832556","display_name":"Structural Classification of Proteins database","level":3,"score":0.482177197933197},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.480996698141098},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47176221013069153},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.47022247314453125},{"id":"https://openalex.org/C27149982","wikidata":"https://www.wikidata.org/wiki/Q3456514","display_name":"Tandem repeat","level":4,"score":0.4649810492992401},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.44849443435668945},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4358243942260742},{"id":"https://openalex.org/C136475424","wikidata":"https://www.wikidata.org/wiki/Q7251500","display_name":"Protein structure database","level":4,"score":0.41874590516090393},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32700809836387634},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3098476529121399},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.2875104546546936},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.22803378105163574},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.2129306197166443},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15778642892837524},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020449","descriptor_name":"Repetitive Sequences, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020449","descriptor_name":"Repetitive Sequences, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020449","descriptor_name":"Repetitive Sequences, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gkw1136","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1136","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D308/8846970/gkw1136.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:27899671","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27899671","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmid:27928056","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27928056","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:5210593","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkw1136","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:HAL:hal-01875237v1","is_oa":false,"landing_page_url":"https://hal.science/hal-01875237","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2017, 45 (D1), pp.D308--D312. ⟨10.1093/nar/gkw1136⟩","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:4248849","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5389603","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:nar:45/D1/D308","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/45/D1/D308","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:www.research.unipd.it:11577/3221910","is_oa":false,"landing_page_url":"http://hdl.handle.net/11577/3221910","pdf_url":null,"source":{"id":"https://openalex.org/S4377196283","display_name":"Research Padua  Archive (University of Padua)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkw1136","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1136","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D308/8846970/gkw1136.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2558945136.pdf"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1499198785","https://openalex.org/W1831892352","https://openalex.org/W1837722206","https://openalex.org/W1843054844","https://openalex.org/W1867763642","https://openalex.org/W1967286518","https://openalex.org/W2004622806","https://openalex.org/W2008238932","https://openalex.org/W2015224025","https://openalex.org/W2021361412","https://openalex.org/W2054681398","https://openalex.org/W2073155300","https://openalex.org/W2081626827","https://openalex.org/W2108570063","https://openalex.org/W2112914389","https://openalex.org/W2123130967","https://openalex.org/W2129328366","https://openalex.org/W2135007755","https://openalex.org/W2135192000","https://openalex.org/W2143370123","https://openalex.org/W2161880345","https://openalex.org/W2164461702","https://openalex.org/W2167644235","https://openalex.org/W2170463736","https://openalex.org/W2199134476","https://openalex.org/W2205148961","https://openalex.org/W2211953232","https://openalex.org/W2224056471","https://openalex.org/W2238875425","https://openalex.org/W2253566302","https://openalex.org/W2262513754","https://openalex.org/W2280283052","https://openalex.org/W2291797369","https://openalex.org/W2292491794","https://openalex.org/W2343207816","https://openalex.org/W2345957401","https://openalex.org/W2739999456","https://openalex.org/W4320573464","https://openalex.org/W6679852115","https://openalex.org/W6684498831","https://openalex.org/W6691824461"],"related_works":["https://openalex.org/W2113091268","https://openalex.org/W1979707045","https://openalex.org/W4235583582","https://openalex.org/W1997379747","https://openalex.org/W1973462822","https://openalex.org/W2041318800","https://openalex.org/W2795701515","https://openalex.org/W1940137454","https://openalex.org/W1503558940","https://openalex.org/W2047036156"],"abstract_inverted_index":{"RepeatsDB":[0,39,53],"2.0":[1,54],"(URL:":[2],"http://repeatsdb.bio.unipd.it/)":[3],"is":[4,96,134],"an":[5,41,99,165],"update":[6],"of":[7,10,22,38,74,105,130,160],"the":[8,63,82,88,106,161],"database":[9],"annotated":[11],"tandem":[12],"repeat":[13,64,75],"protein":[14,51],"structures.":[15,52],"Repeat":[16],"proteins":[17,24],"are":[18],"a":[19,35,113,121,127,151],"widespread":[20],"class":[21],"non-globular":[23],"carrying":[25],"heterogeneous":[26],"functions":[27],"involved":[28],"in":[29],"several":[30],"diseases.":[31],"Here":[32],"we":[33],"provide":[34],"new":[36,114,152],"version":[37],"with":[40,93,142],"improved":[42],"classification":[43,153],"schema":[44],"including":[45],"high":[46],"quality":[47,95],"annotations":[48],"for":[49,62,68,103,117,126,168],"\u223c5400":[50],"features":[55],"information":[56,146],"on":[57,158],"start":[58],"and":[59,66,120,147,175],"end":[60],"positions":[61],"regions":[65],"units":[67],"all":[69],"entries.":[70,107],"The":[71,108],"extensive":[72,100],"growth":[73],"unit":[76,139],"characterization":[77],"was":[78],"possible":[79,136],"by":[80,98],"applying":[81],"novel":[83],"ReUPred":[84],"annotation":[85],"method":[86],"over":[87],"entire":[89],"Protein":[90],"Data":[91],"Bank,":[92],"data":[94],"guaranteed":[97],"manual":[101],"validation":[102],">60%":[104],"updated":[109],"web":[110],"interface":[111],"includes":[112],"search":[115],"engine":[116],"complex":[118],"queries":[119],"fully":[122],"re-designed":[123],"entry":[124],"page":[125],"better":[128],"overview":[129],"structural":[131],"data.":[132],"It":[133],"now":[135],"to":[137],"compare":[138],"positions,":[140],"together":[141],"secondary":[143],"structure,":[144],"fold":[145],"Pfam":[148],"domains.":[149],"Moreover,":[150],"level":[154],"has":[155],"been":[156],"introduced":[157],"top":[159],"existing":[162],"scheme":[163],"as":[164],"independent":[166],"layer":[167],"sequence":[169],"similarity":[170],"relationships":[171],"at":[172],"40%,":[173],"60%":[174],"90%":[176],"identity.":[177]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":16},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":3}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2016-12-08T00:00:00"}