{"id":"https://openalex.org/W2558561667","doi":"https://doi.org/10.1093/nar/gkw1135","title":"Rice SNP-seek database update: new SNPs, indels, and queries","display_name":"Rice SNP-seek database update: new SNPs, indels, and queries","publication_year":2016,"publication_date":"2016-11-04","ids":{"openalex":"https://openalex.org/W2558561667","doi":"https://doi.org/10.1093/nar/gkw1135","mag":"2558561667","pmid":"https://pubmed.ncbi.nlm.nih.gov/27899667"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkw1135","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1135","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D1075/8846963/gkw1135.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/45/D1/D1075/8846963/gkw1135.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055951269","display_name":"Locedie Mansueto","orcid":"https://orcid.org/0000-0003-2798-5519"},"institutions":[{"id":"https://openalex.org/I162210093","display_name":"International Rice Research Institute","ror":"https://ror.org/0593p4448","country_code":"PH","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I162210093"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Locedie Mansueto","raw_affiliation_strings":["International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines","institution_ids":["https://openalex.org/I162210093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040014094","display_name":"Roven Rommel Fuentes","orcid":"https://orcid.org/0009-0002-8512-619X"},"institutions":[{"id":"https://openalex.org/I162210093","display_name":"International Rice Research Institute","ror":"https://ror.org/0593p4448","country_code":"PH","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I162210093"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Roven Rommel Fuentes","raw_affiliation_strings":["International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines","institution_ids":["https://openalex.org/I162210093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069379158","display_name":"Frances Nikki Borja","orcid":null},"institutions":[{"id":"https://openalex.org/I162210093","display_name":"International Rice Research Institute","ror":"https://ror.org/0593p4448","country_code":"PH","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I162210093"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Frances Nikki Borja","raw_affiliation_strings":["International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines","institution_ids":["https://openalex.org/I162210093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050584695","display_name":"Jeffery Detras","orcid":null},"institutions":[{"id":"https://openalex.org/I162210093","display_name":"International Rice Research Institute","ror":"https://ror.org/0593p4448","country_code":"PH","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I162210093"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Jeffery Detras","raw_affiliation_strings":["International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines","institution_ids":["https://openalex.org/I162210093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041808889","display_name":"Juan Miguel Abriol-Santos","orcid":null},"institutions":[{"id":"https://openalex.org/I162210093","display_name":"International Rice Research Institute","ror":"https://ror.org/0593p4448","country_code":"PH","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I162210093"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Juan Miguel Abriol-Santos","raw_affiliation_strings":["International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines","institution_ids":["https://openalex.org/I162210093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059871468","display_name":"Dmytro Chebotarov","orcid":"https://orcid.org/0000-0003-1351-9453"},"institutions":[{"id":"https://openalex.org/I162210093","display_name":"International Rice Research Institute","ror":"https://ror.org/0593p4448","country_code":"PH","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I162210093"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Dmytro Chebotarov","raw_affiliation_strings":["International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines","institution_ids":["https://openalex.org/I162210093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049094533","display_name":"Millicent D. Alexandrov Sanciangco","orcid":"https://orcid.org/0000-0002-9472-3167"},"institutions":[{"id":"https://openalex.org/I162210093","display_name":"International Rice Research Institute","ror":"https://ror.org/0593p4448","country_code":"PH","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I162210093"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Millicent Sanciangco","raw_affiliation_strings":["International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines","institution_ids":["https://openalex.org/I162210093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003406123","display_name":"Kevin Palis","orcid":"https://orcid.org/0000-0001-7297-2384"},"institutions":[{"id":"https://openalex.org/I162210093","display_name":"International Rice Research Institute","ror":"https://ror.org/0593p4448","country_code":"PH","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I162210093"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I87424562","display_name":"Ithaca College","ror":"https://ror.org/01kw1gj07","country_code":"US","type":"education","lineage":["https://openalex.org/I87424562"]}],"countries":["PH","US"],"is_corresponding":false,"raw_author_name":"Kevin Palis","raw_affiliation_strings":["Boyce Thompson Institute, Ithaca, NY 14853, USA","International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boyce Thompson Institute, Ithaca, NY 14853, USA","institution_ids":["https://openalex.org/I87424562","https://openalex.org/I205783295"]},{"raw_affiliation_string":"International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines","institution_ids":["https://openalex.org/I162210093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072198160","display_name":"Dario Copetti","orcid":"https://orcid.org/0000-0002-2680-2568"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dario Copetti","raw_affiliation_strings":["Arizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ 85750, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Arizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ 85750, USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066994679","display_name":"Alexandre Poliakov","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexandre Poliakov","raw_affiliation_strings":["DOE Joint Genome Institute, Walnut Creek, CA 94598, USA","Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107834893","display_name":"Inna Dubchak","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Inna Dubchak","raw_affiliation_strings":["DOE Joint Genome Institute, Walnut Creek, CA 94598, USA","Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Walnut Creek, CA 94598, USA","institution_ids":["https://openalex.org/I196679689"]},{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019821677","display_name":"Victor Solovyev","orcid":"https://orcid.org/0000-0001-8885-493X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Victor Solovyev","raw_affiliation_strings":["Softberry, Inc., Mount Kisco, NY 10549, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Softberry, Inc., Mount Kisco, NY 10549, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006286921","display_name":"Rod A. Wing","orcid":"https://orcid.org/0000-0001-6633-6226"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]},{"id":"https://openalex.org/I162210093","display_name":"International Rice Research Institute","ror":"https://ror.org/0593p4448","country_code":"PH","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I162210093"]}],"countries":["PH","US"],"is_corresponding":false,"raw_author_name":"Rod A. Wing","raw_affiliation_strings":["Arizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ 85750, USA","International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Arizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ 85750, USA","institution_ids":["https://openalex.org/I138006243"]},{"raw_affiliation_string":"International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines","institution_ids":["https://openalex.org/I162210093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079012401","display_name":"Ruaraidh Sackville Hamilton","orcid":null},"institutions":[{"id":"https://openalex.org/I162210093","display_name":"International Rice Research Institute","ror":"https://ror.org/0593p4448","country_code":"PH","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I162210093"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Ruaraidh Sackville Hamilton","raw_affiliation_strings":["International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines","institution_ids":["https://openalex.org/I162210093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083094488","display_name":"Ramil Mauleon","orcid":"https://orcid.org/0000-0001-8512-144X"},"institutions":[{"id":"https://openalex.org/I162210093","display_name":"International Rice Research Institute","ror":"https://ror.org/0593p4448","country_code":"PH","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I162210093"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Ramil Mauleon","raw_affiliation_strings":["International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines","institution_ids":["https://openalex.org/I162210093"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Kenneth L. McNally","orcid":null},"institutions":[{"id":"https://openalex.org/I162210093","display_name":"International Rice Research Institute","ror":"https://ror.org/0593p4448","country_code":"PH","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I162210093"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Kenneth L. McNally","raw_affiliation_strings":["International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines","institution_ids":["https://openalex.org/I162210093"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062487682","display_name":"Nickolai Alexandrov","orcid":"https://orcid.org/0000-0003-3381-0918"},"institutions":[{"id":"https://openalex.org/I162210093","display_name":"International Rice Research Institute","ror":"https://ror.org/0593p4448","country_code":"PH","type":"nonprofit","lineage":["https://openalex.org/I1286583668","https://openalex.org/I162210093"]}],"countries":["PH"],"is_corresponding":true,"raw_author_name":"Nickolai Alexandrov","raw_affiliation_strings":["International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines n.alexandrov@irri.org","International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines n.alexandrov@irri.org","institution_ids":["https://openalex.org/I162210093"]},{"raw_affiliation_string":"International Rice Research Institute, College, Los Ba\u00f1os, Laguna 4031, Philippines","institution_ids":["https://openalex.org/I162210093"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5062487682"],"corresponding_institution_ids":["https://openalex.org/I162210093"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":9.2258,"has_fulltext":true,"cited_by_count":396,"citation_normalized_percentile":{"value":0.98369906,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"45","issue":"D1","first_page":"D1075","last_page":"D1081"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9828000068664551,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/indel","display_name":"Indel","score":0.7298348546028137},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.6766019463539124},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5918930172920227},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5509973764419556},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.5261099934577942},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5056452751159668},{"id":"https://openalex.org/keywords/dbsnp","display_name":"dbSNP","score":0.4754866361618042},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4690682590007782},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.457767516374588},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.456533282995224},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4448193609714508},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3952976167201996},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3829350471496582},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.36359813809394836},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3399035930633545},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.30896955728530884},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.28972816467285156},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.27000099420547485},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.07768318057060242}],"concepts":[{"id":"https://openalex.org/C119054055","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"Indel","level":5,"score":0.7298348546028137},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.6766019463539124},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5918930172920227},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5509973764419556},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.5261099934577942},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5056452751159668},{"id":"https://openalex.org/C35794970","wikidata":"https://www.wikidata.org/wiki/Q5243761","display_name":"dbSNP","level":5,"score":0.4754866361618042},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4690682590007782},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.457767516374588},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.456533282995224},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4448193609714508},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3952976167201996},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3829350471496582},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.36359813809394836},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3399035930633545},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.30896955728530884},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.28972816467285156},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.27000099420547485},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.07768318057060242}],"mesh":[{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056426","descriptor_name":"Genetic Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056426","descriptor_name":"Genetic Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056426","descriptor_name":"Genetic Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkw1135","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1135","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D1075/8846963/gkw1135.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:27899667","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27899667","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:osti.gov:1625549","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1625549","pdf_url":"https://www.osti.gov/servlets/purl/1625549","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:9638494","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:open-archive.highwire.org:nar:45/D1/D1075","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/45/D1/D1075","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:5210592","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5210592","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkw1135","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1135","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D1075/8846963/gkw1135.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","score":0.5400000214576721,"display_name":"Life below water"}],"awards":[{"id":"https://openalex.org/G6778350887","display_name":"XSEDE: eXtreme Science and Engineering Discovery Environment","funder_award_id":"1053575","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320329182","display_name":"Consortium of International Agricultural Research Centers","ror":null},{"id":"https://openalex.org/F4320333817","display_name":"Advanced Science and Technology Institute","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2558561667.pdf","grobid_xml":"https://content.openalex.org/works/W2558561667.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1495787001","https://openalex.org/W1580492967","https://openalex.org/W2027448315","https://openalex.org/W2035806597","https://openalex.org/W2043116503","https://openalex.org/W2094247015","https://openalex.org/W2101163218","https://openalex.org/W2104375019","https://openalex.org/W2106578986","https://openalex.org/W2106780701","https://openalex.org/W2113399287","https://openalex.org/W2117179531","https://openalex.org/W2119180969","https://openalex.org/W2122732537","https://openalex.org/W2130774313","https://openalex.org/W2138098955","https://openalex.org/W2142386149","https://openalex.org/W2147201730","https://openalex.org/W2151397621","https://openalex.org/W2152979984","https://openalex.org/W2156622081","https://openalex.org/W2159788203","https://openalex.org/W2161069068","https://openalex.org/W2167155938","https://openalex.org/W2177432010","https://openalex.org/W2303542186","https://openalex.org/W2336973098","https://openalex.org/W2432508461","https://openalex.org/W3216020230","https://openalex.org/W4234816720","https://openalex.org/W4244285909","https://openalex.org/W6675986982"],"related_works":["https://openalex.org/W2029292949","https://openalex.org/W2183282798","https://openalex.org/W4243015022","https://openalex.org/W45489710","https://openalex.org/W2061407956","https://openalex.org/W2145418365","https://openalex.org/W2562167383","https://openalex.org/W1488697306","https://openalex.org/W2553356891","https://openalex.org/W2611941752"],"abstract_inverted_index":{"We":[0,12],"describe":[1],"updates":[2],"to":[3,112,123,140,149],"the":[4,32,36,75,121],"Rice":[5],"SNP-Seek":[6,159],"Database":[7],"since":[8],"its":[9],"first":[10],"release.":[11],"ran":[13],"a":[14,94,143,164],"new":[15],"SNP-calling":[16],"pipeline":[17,37],"followed":[18],"by":[19,92],"filtering":[20],"that":[21],"resulted":[22],"in":[23,142],"complete,":[24],"base,":[25],"filtered":[26],"and":[27,49,54,64,71,79,98,108,138],"core":[28],"SNP":[29,62,131],"datasets.":[30],"Besides":[31],"Nipponbare":[33],"reference":[34,60],"genome,":[35],"was":[38],"run":[39],"on":[40],"genome":[41,77,83],"assemblies":[42,78],"of":[43,96,158],"IR":[44],"64,":[45],"93-11,":[46],"DJ":[47],"123":[48],"Kasalath.":[50],"New":[51],"genotype":[52,101],"query":[53,125],"display":[55],"features":[56,154],"are":[57,110],"added":[58],"for":[59,89,100,105,127],"assemblies,":[61],"datasets":[63],"indels.":[65],"JBrowse":[66],"now":[67],"displays":[68],"BAM,":[69],"VCF":[70],"other":[72],"annotation":[73],"tracks,":[74],"additional":[76],"an":[80],"embedded":[81],"VISTA":[82],"comparison":[84],"viewer.":[85],"Middleware":[86],"is":[87],"redesigned":[88],"improved":[90,111],"performance":[91],"using":[93],"hybrid":[95],"HDF5":[97],"RDMS":[99],"storage.":[102],"Query":[103],"modules":[104],"genotypes,":[106],"varieties":[107],"genes":[109],"handle":[113],"various":[114,161],"constraints.":[115],"An":[116],"integrated":[117],"list":[118],"manager":[119],"allows":[120],"user":[122],"pass":[124],"parameters":[126],"further":[128],"analysis.":[129],"The":[130],"Annotator":[132],"adds":[133],"traits,":[134],"ontology":[135],"terms,":[136],"effects":[137],"interactions":[139],"markers":[141],"list.":[144],"Web-service":[145],"calls":[146],"were":[147],"implemented":[148],"access":[150],"most":[151],"data.":[152],"These":[153],"enable":[155],"seamless":[156],"querying":[157],"across":[160],"biological":[162],"entities,":[163],"step":[165],"toward":[166],"semi-automated":[167],"gene-trait":[168],"association":[169],"discovery.":[170],"URL:":[171],"http://snp-seek.irri.org.":[172]},"counts_by_year":[{"year":2026,"cited_by_count":19},{"year":2025,"cited_by_count":34},{"year":2024,"cited_by_count":45},{"year":2023,"cited_by_count":47},{"year":2022,"cited_by_count":60},{"year":2021,"cited_by_count":71},{"year":2020,"cited_by_count":64},{"year":2019,"cited_by_count":33},{"year":2018,"cited_by_count":17},{"year":2017,"cited_by_count":4}],"updated_date":"2026-07-03T08:13:44.112507","created_date":"2025-10-10T00:00:00"}
