{"id":"https://openalex.org/W2558837609","doi":"https://doi.org/10.1093/nar/gkw1105","title":"EuPathDB: the eukaryotic pathogen genomics database resource","display_name":"EuPathDB: the eukaryotic pathogen genomics database resource","publication_year":2016,"publication_date":"2016-10-28","ids":{"openalex":"https://openalex.org/W2558837609","doi":"https://doi.org/10.1093/nar/gkw1105","mag":"2558837609","pmid":"https://pubmed.ncbi.nlm.nih.gov/27903906"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkw1105","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1105","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D581/8846876/gkw1105.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/45/D1/D581/8846876/gkw1105.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114099214","display_name":"Cristina Aurrecoechea","orcid":null},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cristina Aurrecoechea","raw_affiliation_strings":["Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA"],"affiliations":[{"raw_affiliation_string":"Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103952726","display_name":"A. L. H. Barreto","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ana Barreto","raw_affiliation_strings":["Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045516207","display_name":"Evelina Y. Basenko","orcid":"https://orcid.org/0000-0001-8611-5447"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Evelina Y. Basenko","raw_affiliation_strings":["Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA"],"affiliations":[{"raw_affiliation_string":"Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019081511","display_name":"John Brestelli","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Brestelli","raw_affiliation_strings":["Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090491634","display_name":"Brian P. Brunk","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian P. Brunk","raw_affiliation_strings":["Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011047634","display_name":"Shon Cade","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shon Cade","raw_affiliation_strings":["Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019794734","display_name":"Kathryn Crouch","orcid":"https://orcid.org/0000-0001-9310-4762"},"institutions":[{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]},{"id":"https://openalex.org/I4210094430","display_name":"Wellcome Centre for Molecular Parasitology","ror":"https://ror.org/00m7w8s72","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210094430","https://openalex.org/I7882870","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kathryn Crouch","raw_affiliation_strings":["Wellcome Trust Centre for Molecular Parasitology, University of Glasgow, Glasgow G12 8TA, UK"],"affiliations":[{"raw_affiliation_string":"Wellcome Trust Centre for Molecular Parasitology, University of Glasgow, Glasgow G12 8TA, UK","institution_ids":["https://openalex.org/I4210094430","https://openalex.org/I87048295","https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108972921","display_name":"Ryan Doherty","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ryan Doherty","raw_affiliation_strings":["Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058605468","display_name":"Dave Falke","orcid":null},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dave Falke","raw_affiliation_strings":["Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA"],"affiliations":[{"raw_affiliation_string":"Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112436415","display_name":"Steve Fischer","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steve Fischer","raw_affiliation_strings":["Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086963655","display_name":"Bindu Gajria","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bindu Gajria","raw_affiliation_strings":["Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078540541","display_name":"Omar S. Harb","orcid":"https://orcid.org/0000-0003-4446-6200"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Omar S. Harb","raw_affiliation_strings":["Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA oharb@sas.upenn.edu","Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA oharb@sas.upenn.edu","institution_ids":[]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007412089","display_name":"Mark Heiges","orcid":null},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Heiges","raw_affiliation_strings":["Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA"],"affiliations":[{"raw_affiliation_string":"Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088635782","display_name":"Christiane Hertz\u2010Fowler","orcid":"https://orcid.org/0000-0002-0729-6479"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christiane Hertz-Fowler","raw_affiliation_strings":["Centre for Genomic Research, University of Liverpool, Liverpool L69 7ZB, UK"],"affiliations":[{"raw_affiliation_string":"Centre for Genomic Research, University of Liverpool, Liverpool L69 7ZB, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035978095","display_name":"Sufen Hu","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sufen Hu","raw_affiliation_strings":["Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001809147","display_name":"John Iodice","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Iodice","raw_affiliation_strings":["Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078588375","display_name":"Jessica C. Kissinger","orcid":"https://orcid.org/0000-0002-6413-1101"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jessica C. Kissinger","raw_affiliation_strings":["Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA","Department of Genetics, University of Georgia, Athens, GA 30602, USA","Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA"],"affiliations":[{"raw_affiliation_string":"Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA","institution_ids":["https://openalex.org/I165733156"]},{"raw_affiliation_string":"Department of Genetics, University of Georgia, Athens, GA 30602, USA","institution_ids":["https://openalex.org/I165733156"]},{"raw_affiliation_string":"Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085781692","display_name":"Cris Lawrence","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cris Lawrence","raw_affiliation_strings":["Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100318082","display_name":"Wei Li","orcid":"https://orcid.org/0000-0001-9931-5990"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wei Li","raw_affiliation_strings":["Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072993184","display_name":"Deborah F. Pinney","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Deborah F. Pinney","raw_affiliation_strings":["Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013465476","display_name":"Jane A. Pulman","orcid":null},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jane A. Pulman","raw_affiliation_strings":["Centre for Genomic Research, Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK"],"affiliations":[{"raw_affiliation_string":"Centre for Genomic Research, Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038050740","display_name":"David S. Roos","orcid":"https://orcid.org/0000-0001-6725-4089"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David S. Roos","raw_affiliation_strings":["Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055066294","display_name":"Achchuthan Shanmugasundram","orcid":"https://orcid.org/0000-0003-2349-6929"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Achchuthan Shanmugasundram","raw_affiliation_strings":["Centre for Genomic Research, Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK"],"affiliations":[{"raw_affiliation_string":"Centre for Genomic Research, Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005561017","display_name":"F\u00e1tima Silva-Franco","orcid":"https://orcid.org/0000-0002-2900-027X"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Fatima Silva-Franco","raw_affiliation_strings":["Centre for Genomic Research, Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK"],"affiliations":[{"raw_affiliation_string":"Centre for Genomic Research, Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048978715","display_name":"Sascha Steinbiss","orcid":"https://orcid.org/0000-0002-2151-0574"},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sascha Steinbiss","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Parasite Genomics, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK"],"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Parasite Genomics, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069334659","display_name":"Christian J. Stoeckert","orcid":"https://orcid.org/0000-0002-5714-991X"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christian J. Stoeckert","raw_affiliation_strings":["Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011324022","display_name":"Drew Spruill","orcid":null},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Drew Spruill","raw_affiliation_strings":["Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA"],"affiliations":[{"raw_affiliation_string":"Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100603996","display_name":"Haiming Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Haiming Wang","raw_affiliation_strings":["Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA"],"affiliations":[{"raw_affiliation_string":"Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063103223","display_name":"Susanne Warrenfeltz","orcid":"https://orcid.org/0000-0002-9789-8878"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Susanne Warrenfeltz","raw_affiliation_strings":["Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA"],"affiliations":[{"raw_affiliation_string":"Center for Tropical & Emerging Global Diseases, University of Georgia, Athens, GA 30602, USA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100652277","display_name":"Jie Zheng","orcid":"https://orcid.org/0000-0002-2999-0103"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jie Zheng","raw_affiliation_strings":["Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA","institution_ids":["https://openalex.org/I79576946"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":30,"corresponding_author_ids":["https://openalex.org/A5078540541"],"corresponding_institution_ids":["https://openalex.org/I79576946"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":14.2261,"has_fulltext":false,"cited_by_count":236,"citation_normalized_percentile":{"value":0.99212941,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"45","issue":"D1","first_page":"D581","last_page":"D591"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9807999730110168,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7145175337791443},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6480096578598022},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5922967791557312},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5220006704330444},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5182002186775208},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.5133870840072632},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4757011830806732},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.43882888555526733},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.417997270822525},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.4122438430786133},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3633410930633545},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.31790193915367126},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.24980202317237854},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.1994224488735199},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17417258024215698}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7145175337791443},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6480096578598022},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5922967791557312},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5220006704330444},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5182002186775208},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.5133870840072632},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4757011830806732},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.43882888555526733},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.417997270822525},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.4122438430786133},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3633410930633545},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.31790193915367126},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.24980202317237854},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.1994224488735199},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17417258024215698},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkw1105","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1105","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D581/8846876/gkw1105.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:27903906","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27903906","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:eprints.gla.ac.uk:132177","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4210235606","display_name":"ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam)","issn_l":"2622-8912","issn":["2622-8912","2622-8920"],"is_oa":false,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Articles"},{"id":"pmh:oai:open-archive.highwire.org:nar:45/D1/D581","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/45/D1/D581","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:5210576","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkw1105","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkw1105","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1105","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D581/8846876/gkw1105.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4399999976158142}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2558837609.pdf","grobid_xml":"https://content.openalex.org/works/W2558837609.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1526257973","https://openalex.org/W1969675093","https://openalex.org/W1970341475","https://openalex.org/W1986708244","https://openalex.org/W2035169581","https://openalex.org/W2047817180","https://openalex.org/W2048933815","https://openalex.org/W2051643755","https://openalex.org/W2052375196","https://openalex.org/W2053551770","https://openalex.org/W2088302077","https://openalex.org/W2094201044","https://openalex.org/W2110256992","https://openalex.org/W2111310791","https://openalex.org/W2111470171","https://openalex.org/W2116140151","https://openalex.org/W2118349439","https://openalex.org/W2121879370","https://openalex.org/W2125264382","https://openalex.org/W2128601422","https://openalex.org/W2133040714","https://openalex.org/W2134028524","https://openalex.org/W2134526812","https://openalex.org/W2140611297","https://openalex.org/W2141541659","https://openalex.org/W2145477956","https://openalex.org/W2152239989","https://openalex.org/W2153369718","https://openalex.org/W2155369946","https://openalex.org/W2171530398","https://openalex.org/W2256366535","https://openalex.org/W2295386458","https://openalex.org/W2346143774","https://openalex.org/W2474869522","https://openalex.org/W2511428910"],"related_works":["https://openalex.org/W2168783124","https://openalex.org/W2126958666","https://openalex.org/W4243357985","https://openalex.org/W2105071916","https://openalex.org/W2184120357","https://openalex.org/W2126088744","https://openalex.org/W1979675584","https://openalex.org/W2366576702","https://openalex.org/W2909698402","https://openalex.org/W1759033142"],"abstract_inverted_index":{"The":[0],"Eukaryotic":[1],"Pathogen":[2],"Genomics":[3],"Database":[4],"Resource":[5],"(EuPathDB,":[6],"http://eupathdb.org)":[7],"is":[8,86,123],"a":[9,170,178],"collection":[10],"of":[11,35,69,115,153,166,177,189,200],"databases":[12,40],"covering":[13],"170+":[14],"eukaryotic":[15],"pathogens":[16],"(protists":[17],"&":[18],"fungi),":[19],"along":[20],"with":[21,44,63,88,191],"relevant":[22],"free-living":[23],"and":[24,27,46,57,83,96,105,126,145,157,169,195,198],"non-pathogenic":[25],"species,":[26],"select":[28],"pathogen":[29],"hosts.":[30],"To":[31],"facilitate":[32],"the":[33,39,64],"discovery":[34],"meaningful":[36],"biological":[37],"relationships,":[38],"couple":[41],"preconfigured":[42],"searches":[43],"visualization":[45],"analysis":[47,91,114],"tools":[48,100],"for":[49,113,174,186],"comprehensive":[50],"data":[51,60,74,79,81,94,97,121,129,132,155,190,194],"mining":[52],"via":[53],"intuitive":[54],"graphical":[55],"interfaces":[56],"APIs.":[58],"All":[59],"are":[61,75],"analyzed":[62],"same":[65],"workflows,":[66],"including":[67],"creation":[68],"gene":[70,162],"orthology":[71],"profiles,":[72],"so":[73],"easily":[76],"compared":[77],"across":[78],"sets,":[80],"types":[82,133],"organisms.":[84],"EuPathDB":[85,171,193],"updated":[87],"numerous":[89],"new":[90,131],"tools,":[92],"features,":[93],"sets":[95,156],"types.":[98],"New":[99,148],"include":[101,134,150,183],"GO,":[102],"metabolic":[103,137],"pathway":[104],"word":[106],"enrichment":[107],"analyses":[108,176],"plus":[109],"an":[110],"online":[111],"workspace":[112],"personal,":[116],"non-public,":[117],"large-scale":[118],"data.":[119,180],"Expanded":[120],"content":[122],"mostly":[124],"genomic":[125,128],"functional":[127],"while":[130],"protein":[135],"microarray,":[136],"pathways,":[138],"compounds,":[139],"quantitative":[140],"proteomics,":[141],"copy":[142],"number":[143],"variation,":[144],"polysomal":[146],"transcriptomics.":[147],"features":[149],"consistent":[151],"categorization":[152],"searches,":[154],"genome":[158],"browser":[159],"tracks;":[160],"redesigned":[161],"pages;":[163],"effective":[164],"integration":[165,188,197],"alternative":[167],"transcripts;":[168],"Galaxy":[172],"instance":[173],"private":[175,187],"user's":[179],"Forthcoming":[181],"upgrades":[182],"user":[184],"workspaces":[185],"existing":[192],"improved":[196],"presentation":[199],"host-pathogen":[201],"interactions.":[202]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":25},{"year":2021,"cited_by_count":53},{"year":2020,"cited_by_count":36},{"year":2019,"cited_by_count":38},{"year":2018,"cited_by_count":30},{"year":2017,"cited_by_count":16}],"updated_date":"2026-03-07T16:01:11.037858","created_date":"2025-10-10T00:00:00"}
