{"id":"https://openalex.org/W2560844000","doi":"https://doi.org/10.1093/nar/gkw1089","title":"PHI-base: a new interface and further additions for the multi-species pathogen\u2013host interactions database","display_name":"PHI-base: a new interface and further additions for the multi-species pathogen\u2013host interactions database","publication_year":2016,"publication_date":"2016-10-27","ids":{"openalex":"https://openalex.org/W2560844000","doi":"https://doi.org/10.1093/nar/gkw1089","mag":"2560844000","pmid":"https://pubmed.ncbi.nlm.nih.gov/27915230"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkw1089","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1089","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D604/8846816/gkw1089.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/45/D1/D604/8846816/gkw1089.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066435133","display_name":"Martin Urban","orcid":"https://orcid.org/0000-0003-2440-4352"},"institutions":[{"id":"https://openalex.org/I2799553609","display_name":"Rothamsted Research","ror":"https://ror.org/0347fy350","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799553609","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Martin Urban","raw_affiliation_strings":["Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK Martin.Urban@rothamsted.ac.uk","Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK Martin.Urban@rothamsted.ac.uk","institution_ids":["https://openalex.org/I2799553609"]},{"raw_affiliation_string":"Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK","institution_ids":["https://openalex.org/I2799553609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076579034","display_name":"Alayne Cuzick","orcid":"https://orcid.org/0000-0001-8941-3984"},"institutions":[{"id":"https://openalex.org/I2799553609","display_name":"Rothamsted Research","ror":"https://ror.org/0347fy350","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799553609","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alayne Cuzick","raw_affiliation_strings":["Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK","institution_ids":["https://openalex.org/I2799553609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034311504","display_name":"Kim Rutherford","orcid":"https://orcid.org/0000-0001-6277-726X"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kim Rutherford","raw_affiliation_strings":["Cambridge Systems Biology and Department of Biochemistry, University of Cambridge, Sanger Building, 80 Tennis Court Road, Cambridge, Cambridgeshire CB2 1GA, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cambridge Systems Biology and Department of Biochemistry, University of Cambridge, Sanger Building, 80 Tennis Court Road, Cambridge, Cambridgeshire CB2 1GA, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000903254","display_name":"Alistair G. Irvine","orcid":null},"institutions":[{"id":"https://openalex.org/I2799553609","display_name":"Rothamsted Research","ror":"https://ror.org/0347fy350","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799553609","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alistair Irvine","raw_affiliation_strings":["Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK","institution_ids":["https://openalex.org/I2799553609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042849331","display_name":"Helder Pedro","orcid":"https://orcid.org/0000-0001-7582-1565"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Helder Pedro","raw_affiliation_strings":["The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire CB10 1SD, UK"],"raw_orcid":"https://orcid.org/0000-0001-7582-1565","affiliations":[{"raw_affiliation_string":"The European Molecular Biology Laboratory, The European Bioinformatics Institute, Hinxton, Cambridgeshire CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103567552","display_name":"Rashmi Pant","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rashmi Pant","raw_affiliation_strings":["Molecular Connections Private Limited, Basavanagudi, Bangalore 560 004, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular Connections Private Limited, Basavanagudi, Bangalore 560 004, India","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013571669","display_name":"Vidyendra Sadanadan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vidyendra Sadanadan","raw_affiliation_strings":["Molecular Connections Private Limited, Basavanagudi, Bangalore 560 004, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular Connections Private Limited, Basavanagudi, Bangalore 560 004, India","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005779182","display_name":"Lokanath Khamari","orcid":"https://orcid.org/0000-0001-5456-9030"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lokanath Khamari","raw_affiliation_strings":["Molecular Connections Private Limited, Basavanagudi, Bangalore 560 004, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular Connections Private Limited, Basavanagudi, Bangalore 560 004, India","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038835431","display_name":"Santoshkumar Billal","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Santoshkumar Billal","raw_affiliation_strings":["Molecular Connections Private Limited, Basavanagudi, Bangalore 560 004, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular Connections Private Limited, Basavanagudi, Bangalore 560 004, India","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103702407","display_name":"Sagar Mohanty","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sagar Mohanty","raw_affiliation_strings":["Molecular Connections Private Limited, Basavanagudi, Bangalore 560 004, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular Connections Private Limited, Basavanagudi, Bangalore 560 004, India","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019644399","display_name":"K. E. Hammond\u2010Kosack","orcid":"https://orcid.org/0000-0002-9699-485X"},"institutions":[{"id":"https://openalex.org/I2799553609","display_name":"Rothamsted Research","ror":"https://ror.org/0347fy350","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799553609","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kim E. Hammond-Kosack","raw_affiliation_strings":["Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK Kim.Hammond-Kosack@rothamsted.ac.uk","Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK Kim.Hammond-Kosack@rothamsted.ac.uk","institution_ids":["https://openalex.org/I2799553609"]},{"raw_affiliation_string":"Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Hertfordshire AL5 2JQ, UK","institution_ids":["https://openalex.org/I2799553609"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5066435133"],"corresponding_institution_ids":["https://openalex.org/I2799553609"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":12.9005,"has_fulltext":false,"cited_by_count":246,"citation_normalized_percentile":{"value":0.99055471,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"45","issue":"D1","first_page":"D604","last_page":"D610"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9782999753952026,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8326712250709534},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.6345015168190002},{"id":"https://openalex.org/keywords/base","display_name":"Base (topology)","score":0.5315444469451904},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5233104228973389},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5150558948516846},{"id":"https://openalex.org/keywords/effector","display_name":"Effector","score":0.5148814916610718},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5112061500549316},{"id":"https://openalex.org/keywords/pathogen","display_name":"Pathogen","score":0.4998009204864502},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4700172245502472},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4617469608783722},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.39624452590942383},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3241274058818817},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1493673324584961},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.1002730131149292},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08771929144859314}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8326712250709534},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.6345015168190002},{"id":"https://openalex.org/C42058472","wikidata":"https://www.wikidata.org/wiki/Q810214","display_name":"Base (topology)","level":2,"score":0.5315444469451904},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5233104228973389},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5150558948516846},{"id":"https://openalex.org/C51785407","wikidata":"https://www.wikidata.org/wiki/Q2627568","display_name":"Effector","level":2,"score":0.5148814916610718},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5112061500549316},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.4998009204864502},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4700172245502472},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4617469608783722},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.39624452590942383},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3241274058818817},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1493673324584961},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.1002730131149292},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08771929144859314},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C58226133","wikidata":"https://www.wikidata.org/wiki/Q1324199","display_name":"Pulmonary surfactant","level":2,"score":0.0},{"id":"https://openalex.org/C55352822","wikidata":"https://www.wikidata.org/wiki/Q5558978","display_name":"Gibbs isotherm","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkw1089","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1089","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D604/8846816/gkw1089.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:27915230","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27915230","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:nar:45/D1/D604","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/45/D1/D604","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:5210566","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkw1089","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"doi:10.25504/fairsharing.73cqdk","is_oa":true,"landing_page_url":"https://doi.org/10.25504/fairsharing.73cqdk","pdf_url":null,"source":{"id":"https://openalex.org/S7407053452","display_name":"FAIRsharing.org","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.1093/nar/gkw1089","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1089","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D604/8846816/gkw1089.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6000000238418579,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G4623853755","display_name":null,"funder_award_id":"BB/I000488/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6833004823","display_name":null,"funder_award_id":"BB/K020056/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7112420424","display_name":null,"funder_award_id":"BBS/E/C/00005203","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7227439579","display_name":null,"funder_award_id":"BBS/E/C/000I0250","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G856688604","display_name":null,"funder_award_id":"BBS/E/C/00005192","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320320273","display_name":"University of Cambridge","ror":"https://ror.org/013meh722"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2560844000.pdf","grobid_xml":"https://content.openalex.org/works/W2560844000.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1490161904","https://openalex.org/W1563957366","https://openalex.org/W1596345040","https://openalex.org/W1678649122","https://openalex.org/W1924854984","https://openalex.org/W1964255443","https://openalex.org/W1965202162","https://openalex.org/W1970698656","https://openalex.org/W1998808728","https://openalex.org/W2013642237","https://openalex.org/W2023780637","https://openalex.org/W2026855720","https://openalex.org/W2065645501","https://openalex.org/W2102983252","https://openalex.org/W2117980392","https://openalex.org/W2137037625","https://openalex.org/W2138580200","https://openalex.org/W2147874847","https://openalex.org/W2163878689","https://openalex.org/W2200884943","https://openalex.org/W2302501749","https://openalex.org/W2341045982","https://openalex.org/W2341354795","https://openalex.org/W2346452094","https://openalex.org/W2349232702","https://openalex.org/W2404350425","https://openalex.org/W2521150917","https://openalex.org/W2560844000","https://openalex.org/W2773787581"],"related_works":["https://openalex.org/W4320492283","https://openalex.org/W4214695225","https://openalex.org/W3197607994","https://openalex.org/W2064085750","https://openalex.org/W2783284266","https://openalex.org/W4380992933","https://openalex.org/W2091398531","https://openalex.org/W2343234619","https://openalex.org/W3173815060","https://openalex.org/W4286497165"],"abstract_inverted_index":{"The":[0,105,126,190],"pathogen-host":[1,25],"interactions":[2,26],"database":[3],"(PHI-base)":[4],"is":[5,85],"available":[6],"at":[7],"www.phi-base.org":[8],"PHI-base":[9,67,109,174,200],"contains":[10],"expertly":[11],"curated":[12,50,124],"molecular":[13],"and":[14,76,87,144,159,186,194],"biological":[15],"information":[16,120,129],"on":[17,130,137],"genes":[18,132],"proven":[19],"to":[20,51,90,96,157,161],"affect":[21,44],"the":[22,45,177,195,199],"outcome":[23],"of":[24,108,164,180,198],"reported":[27],"in":[28,140,149,184],"peer":[29],"reviewed":[30],"research":[31],"articles.":[32],"In":[33],"addition,":[34],"literature":[35],"that":[36,41],"indicates":[37],"specific":[38],"gene":[39],"alterations":[40],"did":[42],"not":[43,60],"disease":[46],"interaction":[47],"phenotype":[48],"are":[49,59,147,176,202],"provide":[52,128],"complete":[53],"datasets":[54],"for":[55,94],"comparative":[56],"purposes.":[57],"Viruses":[58],"included.":[61],"Here":[62],"we":[63],"describe":[64],"a":[65,88,92],"revised":[66],"Version":[68,110],"4":[69,175],"data":[70,78,102,117,127,170],"platform":[71],"with":[72],"improved":[73],"search,":[74],"filtering":[75],"extended":[77],"display":[79],"functions.":[80],"A":[81],"PHIB-BLAST":[82],"search":[83],"function":[84],"provided":[86],"link":[89],"PHI-Canto,":[91],"tool":[93],"authors":[95],"directly":[97],"curate":[98],"their":[99],"own":[100],"published":[101],"into":[103,173],"PHI-base.":[104],"new":[106],"release":[107],"4.2":[111],"(October":[112],"2016)":[113],"has":[114],"an":[115],"increased":[116],"content":[118],"containing":[119],"from":[121,133],"2219":[122],"manually":[123],"references.":[125],"4460":[131],"264":[134],"pathogens":[135,146],"tested":[136],"176":[138],"hosts":[139],"8046":[141],"interactions.":[142],"Prokaryotic":[143],"eukaryotic":[145],"represented":[148],"almost":[150],"equal":[151],"numbers.":[152],"Host":[153],"species":[154,163],"belong":[155],"\u223c70%":[156],"plants":[158],"30%":[160],"other":[162],"medical":[165],"and/or":[166],"environmental":[167],"importance.":[168],"Additional":[169],"types":[171],"included":[172],"direct":[178],"targets":[179],"pathogen":[181],"effector":[182],"proteins":[183],"experimental":[185],"natural":[187],"host":[188],"organisms.":[189],"curation":[191],"problems":[192],"encountered":[193],"future":[196],"directions":[197],"project":[201],"briefly":[203],"discussed.":[204]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":23},{"year":2021,"cited_by_count":42},{"year":2020,"cited_by_count":67},{"year":2019,"cited_by_count":38},{"year":2018,"cited_by_count":22},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":2}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2016-12-16T00:00:00"}
