{"id":"https://openalex.org/W2557863110","doi":"https://doi.org/10.1093/nar/gkw1083","title":"OUP accepted manuscript","display_name":"OUP accepted manuscript","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2557863110","doi":"https://doi.org/10.1093/nar/gkw1083","mag":"2557863110","pmid":"https://pubmed.ncbi.nlm.nih.gov/27899563"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkw1083","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1083","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D784/8846800/gkw1083.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/45/D1/D784/8846800/gkw1083.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109345831","display_name":"Myunggyo Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I138925566","display_name":"Ewha Womans University","ror":"https://ror.org/053fp5c05","country_code":"KR","type":"education","lineage":["https://openalex.org/I138925566"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Myunggyo Lee","raw_affiliation_strings":["Department of Bio-Information Science, Ewha Womans University, Seoul 03760, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Bio-Information Science, Ewha Womans University, Seoul 03760, Republic of Korea","institution_ids":["https://openalex.org/I138925566"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004629166","display_name":"Kyubum Lee","orcid":"https://orcid.org/0000-0003-2015-3939"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kyubum Lee","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University, Seoul 02841, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University, Seoul 02841, Republic of Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055381377","display_name":"Namhee Yu","orcid":"https://orcid.org/0000-0003-3967-0813"},"institutions":[{"id":"https://openalex.org/I138925566","display_name":"Ewha Womans University","ror":"https://ror.org/053fp5c05","country_code":"KR","type":"education","lineage":["https://openalex.org/I138925566"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Namhee Yu","raw_affiliation_strings":["Department of Life Science, Ewha Womans University, Seoul 03760, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Life Science, Ewha Womans University, Seoul 03760, Republic of Korea","institution_ids":["https://openalex.org/I138925566"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057172766","display_name":"Insu Jang","orcid":"https://orcid.org/0000-0003-0390-2715"},"institutions":[{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Insu Jang","raw_affiliation_strings":["Korean Bioinformation Center, Korean Research Institute of Bioscience and Biotechnology, Daejeon 34141, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Korean Bioinformation Center, Korean Research Institute of Bioscience and Biotechnology, Daejeon 34141, Republic of Korea","institution_ids":["https://openalex.org/I73616290"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028882583","display_name":"Ikjung Choi","orcid":null},"institutions":[{"id":"https://openalex.org/I138925566","display_name":"Ewha Womans University","ror":"https://ror.org/053fp5c05","country_code":"KR","type":"education","lineage":["https://openalex.org/I138925566"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Ikjung Choi","raw_affiliation_strings":["Ewha Research Center for Systems Biology, Ewha Womans University, Seoul 03760, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Ewha Research Center for Systems Biology, Ewha Womans University, Seoul 03760, Republic of Korea","institution_ids":["https://openalex.org/I138925566"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014102611","display_name":"Pora Kim","orcid":"https://orcid.org/0000-0002-8321-6864"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pora Kim","raw_affiliation_strings":["Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108063212","display_name":"Ye Eun Jang","orcid":"https://orcid.org/0000-0003-2925-5640"},"institutions":[{"id":"https://openalex.org/I138925566","display_name":"Ewha Womans University","ror":"https://ror.org/053fp5c05","country_code":"KR","type":"education","lineage":["https://openalex.org/I138925566"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Ye Eun Jang","raw_affiliation_strings":["Department of Bio-Information Science, Ewha Womans University, Seoul 03760, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Bio-Information Science, Ewha Womans University, Seoul 03760, Republic of Korea","institution_ids":["https://openalex.org/I138925566"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052056501","display_name":"Byounggun Kim","orcid":"https://orcid.org/0000-0002-3212-3385"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Byounggun Kim","raw_affiliation_strings":["Interdisciplinary Graduate Program in Bioinformatics, Korea University, Seoul 02841, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Graduate Program in Bioinformatics, Korea University, Seoul 02841, Republic of Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000850685","display_name":"Sunkyu Kim","orcid":"https://orcid.org/0000-0002-0240-6210"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sunkyu Kim","raw_affiliation_strings":["Interdisciplinary Graduate Program in Bioinformatics, Korea University, Seoul 02841, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Graduate Program in Bioinformatics, Korea University, Seoul 02841, Republic of Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109705475","display_name":"Byungwook Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I73616290","display_name":"Korea Research Institute of Bioscience and Biotechnology","ror":"https://ror.org/03ep23f07","country_code":"KR","type":"facility","lineage":["https://openalex.org/I2801339556","https://openalex.org/I4210144908","https://openalex.org/I4387152098","https://openalex.org/I73616290"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Byungwook Lee","raw_affiliation_strings":["Korean Bioinformation Center, Korean Research Institute of Bioscience and Biotechnology, Daejeon 34141, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Korean Bioinformation Center, Korean Research Institute of Bioscience and Biotechnology, Daejeon 34141, Republic of Korea","institution_ids":["https://openalex.org/I73616290"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076917278","display_name":"Jaewoo Kang","orcid":"https://orcid.org/0000-0001-6798-9106"},"institutions":[{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jaewoo Kang","raw_affiliation_strings":["Department of Computer Science and Engineering, Korea University, Seoul 02841, Republic of Korea kangj@korea.ac.kr","Interdisciplinary Graduate Program in Bioinformatics, Korea University, Seoul 02841, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Korea University, Seoul 02841, Republic of Korea kangj@korea.ac.kr","institution_ids":[]},{"raw_affiliation_string":"Interdisciplinary Graduate Program in Bioinformatics, Korea University, Seoul 02841, Republic of Korea","institution_ids":["https://openalex.org/I197347611"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109345832","display_name":"Sanghyuk Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I138925566","display_name":"Ewha Womans University","ror":"https://ror.org/053fp5c05","country_code":"KR","type":"education","lineage":["https://openalex.org/I138925566"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Sanghyuk Lee","raw_affiliation_strings":["Department of Bio-Information Science, Ewha Womans University, Seoul 03760, Republic of Korea sanghyuk@ewha.ac.kr","Department of Life Science, Ewha Womans University, Seoul 03760, Republic of Korea","Ewha Research Center for Systems Biology, Ewha Womans University, Seoul 03760, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Bio-Information Science, Ewha Womans University, Seoul 03760, Republic of Korea sanghyuk@ewha.ac.kr","institution_ids":[]},{"raw_affiliation_string":"Department of Life Science, Ewha Womans University, Seoul 03760, Republic of Korea","institution_ids":["https://openalex.org/I138925566"]},{"raw_affiliation_string":"Ewha Research Center for Systems Biology, Ewha Womans University, Seoul 03760, Republic of Korea","institution_ids":["https://openalex.org/I138925566"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5109345832"],"corresponding_institution_ids":["https://openalex.org/I138925566"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":5.4936,"has_fulltext":false,"cited_by_count":85,"citation_normalized_percentile":{"value":0.96637897,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"45","issue":"D1","first_page":"D784","last_page":"D789"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11369","display_name":"Genetic factors in colorectal cancer","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fusion-gene","display_name":"Fusion gene","score":0.7212614417076111},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.677832305431366},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5908432602882385},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4979856014251709},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.4191855788230896},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3290642499923706},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3011133372783661},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08781135082244873},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.07442465424537659}],"concepts":[{"id":"https://openalex.org/C111829193","wikidata":"https://www.wikidata.org/wiki/Q1108970","display_name":"Fusion gene","level":3,"score":0.7212614417076111},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.677832305431366},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5908432602882385},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4979856014251709},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.4191855788230896},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3290642499923706},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3011133372783661},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08781135082244873},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.07442465424537659}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015514","descriptor_name":"Oncogene Proteins, Fusion","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015514","descriptor_name":"Oncogene Proteins, Fusion","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015514","descriptor_name":"Oncogene Proteins, Fusion","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkw1083","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1083","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D784/8846800/gkw1083.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:27899563","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27899563","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:http://repository.kribb.re.kr:201005/17016","is_oa":false,"landing_page_url":"http://doi.org/10.1093/nar/gkw1083","pdf_url":null,"source":{"id":"https://openalex.org/S4406922719","display_name":"KRIBB Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"/dspace/upload/original/14651.pdf","raw_type":"Article"},{"id":"pmh:oai:open-archive.highwire.org:nar:45/D1/D784","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/45/D1/D784","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/nar/gkw1083","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1083","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D784/8846800/gkw1083.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2557863110.pdf","grobid_xml":"https://content.openalex.org/works/W2557863110.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W1754443473","https://openalex.org/W1810761522","https://openalex.org/W1816176398","https://openalex.org/W1964670939","https://openalex.org/W2029623390","https://openalex.org/W2042337609","https://openalex.org/W2053343049","https://openalex.org/W2056086199","https://openalex.org/W2062819701","https://openalex.org/W2088534701","https://openalex.org/W2088612061","https://openalex.org/W2102450275","https://openalex.org/W2117112774","https://openalex.org/W2118151336","https://openalex.org/W2119412782","https://openalex.org/W2123489882","https://openalex.org/W2139399606","https://openalex.org/W2141244898","https://openalex.org/W2148802388","https://openalex.org/W2156576646","https://openalex.org/W2160475182","https://openalex.org/W2162259262","https://openalex.org/W2166564409","https://openalex.org/W2167321137","https://openalex.org/W2533611849"],"related_works":["https://openalex.org/W4200033037","https://openalex.org/W3213655218","https://openalex.org/W2391738941","https://openalex.org/W3147425560","https://openalex.org/W2233436997","https://openalex.org/W3018517591","https://openalex.org/W2547207246","https://openalex.org/W4236119335","https://openalex.org/W3134983716","https://openalex.org/W1971332228"],"abstract_inverted_index":{"Fusion":[0],"gene":[1,155],"is":[2,15,59,106,159],"an":[3],"important":[4],"class":[5],"of":[6,19,24,45,61,64,86,101,123,138,153],"therapeutic":[7],"targets":[8],"and":[9,28,53,67,140,150],"prognostic":[10],"markers":[11],"in":[12,130],"cancer.":[13],"ChimerDB":[14,57,157],"a":[16,71],"comprehensive":[17],"database":[18,35],"fusion":[20,75,87,95,111,154],"genes":[21,76,88,96],"encompassing":[22],"analysis":[23,52],"deep":[25,114],"sequencing":[26,115],"data":[27,122],"manual":[29,78],"curations.":[30],"In":[31],"this":[32],"update,":[33],"the":[34,110,124],"coverage":[36],"was":[37],"enhanced":[38],"considerably":[39],"by":[40],"adding":[41],"two":[42,135],"new":[43,143],"modules":[44,63],"The":[46,142],"Cancer":[47],"Genome":[48],"Atlas":[49],"(TCGA)":[50],"RNA-Seq":[51,121],"PubMed":[54,102],"abstract":[55],"mining.":[56],"3.0":[58,158],"composed":[60],"three":[62],"ChimerKB,":[65],"ChimerPub":[66,92],"ChimerSeq.":[68],"ChimerKB":[69],"represents":[70],"knowledgebase":[72],"including":[73],"1066":[74],"with":[77,89],"curation":[79],"that":[80],"were":[81],"compiled":[82],"from":[83,98,113],"public":[84],"resources":[85],"experimental":[90],"evidences.":[91],"includes":[93],"2767":[94],"obtained":[97],"text":[99],"mining":[100],"abstracts.":[103],"ChimerSeq":[104],"module":[105],"designed":[107],"to":[108],"archive":[109],"candidates":[112],"data.":[116],"Importantly,":[117],"we":[118],"have":[119],"analyzed":[120],"TCGA":[125],"project":[126],"covering":[127],"4569":[128],"patients":[129],"23":[131],"cancer":[132],"types":[133],"using":[134],"reliable":[136],"programs":[137],"FusionScan":[139],"TopHat-Fusion.":[141],"user":[144],"interface":[145],"supports":[146],"diverse":[147],"search":[148],"options":[149],"graphic":[151],"representation":[152],"structure.":[156],"available":[160],"at":[161],"http://ercsb.ewha.ac.kr/fusiongene/.":[162]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":19},{"year":2018,"cited_by_count":15},{"year":2017,"cited_by_count":9}],"updated_date":"2026-03-09T08:58:05.943551","created_date":"2016-12-08T00:00:00"}