{"id":"https://openalex.org/W2559149509","doi":"https://doi.org/10.1093/nar/gkw1053","title":"JET2 Viewer: a database of predicted multiple, possibly overlapping, protein\u2013protein interaction sites for PDB structures","display_name":"JET2 Viewer: a database of predicted multiple, possibly overlapping, protein\u2013protein interaction sites for PDB structures","publication_year":2016,"publication_date":"2016-10-21","ids":{"openalex":"https://openalex.org/W2559149509","doi":"https://doi.org/10.1093/nar/gkw1053","mag":"2559149509","pmid":"https://pubmed.ncbi.nlm.nih.gov/27899675"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkw1053","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1053","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D236/8846686/gkw1053.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/45/D1/D236/8846686/gkw1053.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059789864","display_name":"Hugues Ripoche","orcid":"https://orcid.org/0000-0003-0433-1125"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210097156","display_name":"Biologie Computationnelle, Quantitative et Synth\u00e9tique","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Hugues Ripoche","raw_affiliation_strings":["Sorbonne Universit\u00e9s, UPMC University Paris 06, CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), 75005 Paris, France","LCQB - Biologie Computationnelle et Quantitative = Laboratory of Computational and Quantitative Biology (Biologie Computationnelle et Quantitative UMR 7238 CNRS-Universit\u00e9 Pierre et Marie Curie Site des Cordeliers B\u00e2t. A - 4\u00e8me \u00e9tage, 15, Rue de l'Ecole de M\u00e9decine 75006 Paris, France - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9s, UPMC University Paris 06, CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), 75005 Paris, France","institution_ids":["https://openalex.org/I4210097156","https://openalex.org/I39804081","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LCQB - Biologie Computationnelle et Quantitative = Laboratory of Computational and Quantitative Biology (Biologie Computationnelle et Quantitative UMR 7238 CNRS-Universit\u00e9 Pierre et Marie Curie Site des Cordeliers B\u00e2t. A - 4\u00e8me \u00e9tage, 15, Rue de l'Ecole de M\u00e9decine 75006 Paris, France - France)","institution_ids":["https://openalex.org/I4210097156","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076453514","display_name":"\u00c9lodie Laine","orcid":"https://orcid.org/0000-0003-4870-6304"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210097156","display_name":"Biologie Computationnelle, Quantitative et Synth\u00e9tique","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Elodie Laine","raw_affiliation_strings":["Sorbonne Universit\u00e9s, UPMC University Paris 06, CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), 75005 Paris, France","LCQB - Biologie Computationnelle et Quantitative = Laboratory of Computational and Quantitative Biology (Biologie Computationnelle et Quantitative UMR 7238 CNRS-Universit\u00e9 Pierre et Marie Curie Site des Cordeliers B\u00e2t. A - 4\u00e8me \u00e9tage, 15, Rue de l'Ecole de M\u00e9decine 75006 Paris, France - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9s, UPMC University Paris 06, CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), 75005 Paris, France","institution_ids":["https://openalex.org/I4210097156","https://openalex.org/I39804081","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LCQB - Biologie Computationnelle et Quantitative = Laboratory of Computational and Quantitative Biology (Biologie Computationnelle et Quantitative UMR 7238 CNRS-Universit\u00e9 Pierre et Marie Curie Site des Cordeliers B\u00e2t. A - 4\u00e8me \u00e9tage, 15, Rue de l'Ecole de M\u00e9decine 75006 Paris, France - France)","institution_ids":["https://openalex.org/I4210097156","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091509784","display_name":"Nicoletta Ceres","orcid":"https://orcid.org/0000-0003-4384-7730"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210087293","display_name":"Institut de Biologie et de Chimie des Prot\u00e9ines","ror":"https://ror.org/0019x5d05","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I4210087293","https://openalex.org/I4210096427"]},{"id":"https://openalex.org/I4210095149","display_name":"Microbiologie mol\u00e9culaire et iochimie structurale","ror":"https://ror.org/00jv0wy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I4210095149","https://openalex.org/I4210096427"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nicoletta Ceres","raw_affiliation_strings":["CNRS UMR 5086/University Lyon I, Institut de Biologie et Chimie des Proteines, 69367 Lyon, France","BMSSI - Bases mol\u00e9culaires et structurales des syst\u00e8mes infectieux (7 Passage du Vercors 69367 Lyon Cedex 7 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS UMR 5086/University Lyon I, Institut de Biologie et Chimie des Proteines, 69367 Lyon, France","institution_ids":["https://openalex.org/I4210087293","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"BMSSI - Bases mol\u00e9culaires et structurales des syst\u00e8mes infectieux (7 Passage du Vercors 69367 Lyon Cedex 7 - France)","institution_ids":["https://openalex.org/I4210095149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038174177","display_name":"Alessandra Carbone","orcid":"https://orcid.org/0000-0003-2098-5743"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I185839726","display_name":"Institut Universitaire de France","ror":"https://ror.org/055khg266","country_code":"FR","type":"education","lineage":["https://openalex.org/I185839726"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210097156","display_name":"Biologie Computationnelle, Quantitative et Synth\u00e9tique","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Alessandra Carbone","raw_affiliation_strings":["Institut Universitaire de France, 75005 Paris, France","Sorbonne Universit\u00e9s, UPMC University Paris 06, CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), 75005 Paris, France alessandra.carbone@lip6.fr","LCQB - Biologie Computationnelle et Quantitative = Laboratory of Computational and Quantitative Biology (Biologie Computationnelle et Quantitative UMR 7238 CNRS-Universit\u00e9 Pierre et Marie Curie Site des Cordeliers B\u00e2t. A - 4\u00e8me \u00e9tage, 15, Rue de l'Ecole de M\u00e9decine 75006 Paris, France - France)","IUF - Institut universitaire de France (Maison des Universit\u00e9s 103 Boulevard Saint-Michel 75005 Paris - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut Universitaire de France, 75005 Paris, France","institution_ids":["https://openalex.org/I185839726"]},{"raw_affiliation_string":"Sorbonne Universit\u00e9s, UPMC University Paris 06, CNRS, IBPS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), 75005 Paris, France alessandra.carbone@lip6.fr","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4210097156","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LCQB - Biologie Computationnelle et Quantitative = Laboratory of Computational and Quantitative Biology (Biologie Computationnelle et Quantitative UMR 7238 CNRS-Universit\u00e9 Pierre et Marie Curie Site des Cordeliers B\u00e2t. A - 4\u00e8me \u00e9tage, 15, Rue de l'Ecole de M\u00e9decine 75006 Paris, France - France)","institution_ids":["https://openalex.org/I4210097156","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"IUF - Institut universitaire de France (Maison des Universit\u00e9s 103 Boulevard Saint-Michel 75005 Paris - France)","institution_ids":["https://openalex.org/I185839726"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5038174177"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I185839726","https://openalex.org/I39804081","https://openalex.org/I4210097156"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.4428,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.82678699,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"45","issue":"D1","first_page":"D236","last_page":"D242"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.9152435064315796},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.793541431427002},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6137826442718506},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6076427102088928},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5346544981002808},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.5329604744911194},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4583330750465393},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44213399291038513},{"id":"https://openalex.org/keywords/protein-structure-database","display_name":"Protein structure database","score":0.4413473308086395},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.42202630639076233},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34647655487060547},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3422279953956604},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17815759778022766},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.1552506387233734},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.13545763492584229}],"concepts":[{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.9152435064315796},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.793541431427002},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6137826442718506},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6076427102088928},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5346544981002808},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5329604744911194},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4583330750465393},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44213399291038513},{"id":"https://openalex.org/C136475424","wikidata":"https://www.wikidata.org/wiki/Q7251500","display_name":"Protein structure database","level":4,"score":0.4413473308086395},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.42202630639076233},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34647655487060547},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3422279953956604},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17815759778022766},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.1552506387233734},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.13545763492584229},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkw1053","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1053","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D236/8846686/gkw1053.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:27899675","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27899675","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmid:27928059","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27928059","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:HAL:hal-01417190v1","is_oa":false,"landing_page_url":"https://hal.sorbonne-universite.fr/hal-01417190","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2016, 45 (D1), pp.D236-D242. ⟨10.1093/nar/gkw1053⟩","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:4249203","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5397142","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:nar:45/D1/D236","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/45/D1/D236","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:5210541","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5210541","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkw1053","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1053","pdf_url":"https://academic.oup.com/nar/article-pdf/45/D1/D236/8846686/gkw1053.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3183336939","display_name":"Vers une cartographie haute r\u00e9solution des interactions prot\u00e9iques \u00e0 l\u2019\u00e9chelle du g\u00e9nome.","funder_award_id":"ANR-11-BINF-0003","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6641938136","display_name":"Equipement d'excellence de calcul intensif de Mesocentres coordonn\u00e9s - Tremplin vers le calcul petaflopique et l'exascale","funder_award_id":"ANR-10-EQPX-0029","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2559149509.pdf"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W255996521","https://openalex.org/W1829437510","https://openalex.org/W2016088798","https://openalex.org/W2042730255","https://openalex.org/W2043699100","https://openalex.org/W2047468595","https://openalex.org/W2056169996","https://openalex.org/W2062858001","https://openalex.org/W2064444082","https://openalex.org/W2069294211","https://openalex.org/W2069663555","https://openalex.org/W2072284383","https://openalex.org/W2074719974","https://openalex.org/W2081598613","https://openalex.org/W2104760790","https://openalex.org/W2126586461","https://openalex.org/W2130606742","https://openalex.org/W2141627824","https://openalex.org/W2147314814","https://openalex.org/W2147974023","https://openalex.org/W2149640119","https://openalex.org/W2151311229","https://openalex.org/W2153153865","https://openalex.org/W2208315969","https://openalex.org/W2327156920"],"related_works":["https://openalex.org/W4388749535","https://openalex.org/W1979707045","https://openalex.org/W4285340733","https://openalex.org/W3126783617","https://openalex.org/W2732388178","https://openalex.org/W3093468851","https://openalex.org/W2419335570","https://openalex.org/W2121688928","https://openalex.org/W2084743099","https://openalex.org/W4235583582"],"abstract_inverted_index":{"The":[0,112,133],"database":[1],"JET2":[2,35,44,60,83,116],"Viewer,":[3],"openly":[4],"accessible":[5],"at":[6,36],"http://www.jet2viewer.upmc.fr/,":[7],"reports":[8],"putative":[9],"protein":[10,95,107],"binding":[11,73,108],"sites":[12,74],"for":[13,142],"all":[14,118],"three-dimensional":[15],"(3D)":[16],"structures":[17,78],"available":[18],"in":[19],"the":[20,32,72,102],"Protein":[21],"Data":[22],"Bank":[23],"(PDB).":[24],"This":[25,97],"knowledge":[26],"base":[27],"was":[28],"generated":[29],"by":[30],"applying":[31],"computational":[33],"method":[34],"large-scale":[37],"on":[38,88,117],"more":[39,89],"than":[40,90],"20":[41],"000":[42,92],"chains.":[43],"strategy":[45],"yields":[46],"very":[47],"precise":[48],"predictions":[49],"of":[50,71,105,115],"interacting":[51],"surfaces":[52],"and":[53,58,79,146],"unravels":[54],"their":[55],"evolutionary":[56],"process":[57],"complexity.":[59],"Viewer":[61],"provides":[62],"an":[63],"online":[64],"intelligent":[65],"display,":[66],"including":[67],"interactive":[68],"3D":[69],"visualization":[70],"mapped":[75],"onto":[76],"PDB":[77],"suitable":[80],"files":[81],"recording":[82],"analyses.":[84],"Predictions":[85],"were":[86],"evaluated":[87],"15":[91],"experimentally":[93],"characterized":[94],"interfaces.":[96],"is,":[98],"to":[99,138],"our":[100],"knowledge,":[101],"largest":[103],"evaluation":[104],"a":[106],"site":[109],"prediction":[110],"method.":[111],"overall":[113],"performance":[114],"interfaces":[119],"are:":[120],"Sen":[121],"=":[122,125,128,131],"52.52,":[123],"PPV":[124],"51.24,":[126],"Spe":[127],"80.05,":[129],"Acc":[130],"75.89.":[132],"data":[134],"can":[135],"be":[136],"used":[137],"foster":[139],"new":[140],"strategies":[141],"protein\u2013protein":[143],"interactions":[144],"modulation":[145],"interaction":[147],"surface":[148],"redesign.":[149]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":6}],"updated_date":"2026-07-21T08:15:58.654021","created_date":"2016-12-08T00:00:00"}