{"id":"https://openalex.org/W2557776122","doi":"https://doi.org/10.1093/nar/gkw1009","title":"MEGARes: an antimicrobial resistance database for high throughput sequencing","display_name":"MEGARes: an antimicrobial resistance database for high throughput sequencing","publication_year":2016,"publication_date":"2016-11-28","ids":{"openalex":"https://openalex.org/W2557776122","doi":"https://doi.org/10.1093/nar/gkw1009","mag":"2557776122","pmid":"https://pubmed.ncbi.nlm.nih.gov/27899569"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkw1009","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1009","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkw1009","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039881406","display_name":"Steven M. Lakin","orcid":"https://orcid.org/0000-0003-4277-746X"},"institutions":[{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven M. Lakin","raw_affiliation_strings":["Department of Clinical Sciences, Colorado State University, Fort Collins, CO 80523, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Sciences, Colorado State University, Fort Collins, CO 80523, USA","institution_ids":["https://openalex.org/I92446798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013519100","display_name":"Chris Dean","orcid":"https://orcid.org/0000-0003-1242-5375"},"institutions":[{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Dean","raw_affiliation_strings":["Department of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, CO 80523, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, CO 80523, USA","institution_ids":["https://openalex.org/I92446798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004104922","display_name":"Noelle Noyes","orcid":"https://orcid.org/0000-0001-6149-1008"},"institutions":[{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Noelle R. Noyes","raw_affiliation_strings":["Department of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, CO 80523, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, CO 80523, USA","institution_ids":["https://openalex.org/I92446798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010433267","display_name":"Adam Dettenwanger","orcid":null},"institutions":[{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Dettenwanger","raw_affiliation_strings":["Department of Computer Science, Colorado State University, Fort Collins, CO 80523, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Colorado State University, Fort Collins, CO 80523, USA","institution_ids":["https://openalex.org/I92446798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066835164","display_name":"Anne Spencer Ross","orcid":"https://orcid.org/0000-0001-8353-3176"},"institutions":[{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anne Spencer Ross","raw_affiliation_strings":["Department of Computer Science, Colorado State University, Fort Collins, CO 80523, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Colorado State University, Fort Collins, CO 80523, USA","institution_ids":["https://openalex.org/I92446798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065677685","display_name":"Enrique Doster","orcid":"https://orcid.org/0000-0002-3820-8988"},"institutions":[{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Enrique Doster","raw_affiliation_strings":["Department of Clinical Sciences, Colorado State University, Fort Collins, CO 80523, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Sciences, Colorado State University, Fort Collins, CO 80523, USA","institution_ids":["https://openalex.org/I92446798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016650990","display_name":"Pablo Rovira","orcid":"https://orcid.org/0000-0003-2447-1213"},"institutions":[{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pablo Rovira","raw_affiliation_strings":["Department of Animal Sciences, Colorado State University, Fort Collins, CO 80523, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Sciences, Colorado State University, Fort Collins, CO 80523, USA","institution_ids":["https://openalex.org/I92446798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004870248","display_name":"Zaid Abdo","orcid":"https://orcid.org/0000-0002-8272-7734"},"institutions":[{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zaid Abdo","raw_affiliation_strings":["Department of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, CO 80523, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, CO 80523, USA","institution_ids":["https://openalex.org/I92446798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103183161","display_name":"Kenneth L. Jones","orcid":"https://orcid.org/0000-0002-7735-7935"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kenneth L. Jones","raw_affiliation_strings":["Department of Biochemistry and Molecular Genetics, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Genetics, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101801764","display_name":"Jaime Ruiz","orcid":"https://orcid.org/0000-0002-9139-6172"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jaime Ruiz","raw_affiliation_strings":["Department of Computer and Information Science and Engineering, University of Florida, Gainesville, FL 32611, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science and Engineering, University of Florida, Gainesville, FL 32611, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006949356","display_name":"K. E. Belk","orcid":"https://orcid.org/0000-0002-7171-8824"},"institutions":[{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Keith E. Belk","raw_affiliation_strings":["Department of Animal Sciences, Colorado State University, Fort Collins, CO 80523, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Sciences, Colorado State University, Fort Collins, CO 80523, USA","institution_ids":["https://openalex.org/I92446798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005574134","display_name":"Paul S. Morley","orcid":"https://orcid.org/0000-0001-8138-2714"},"institutions":[{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul S. Morley","raw_affiliation_strings":["Department of Clinical Sciences, Colorado State University, Fort Collins, CO 80523, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Sciences, Colorado State University, Fort Collins, CO 80523, USA","institution_ids":["https://openalex.org/I92446798"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059638281","display_name":"Christina Boucher","orcid":"https://orcid.org/0000-0001-5617-7495"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Christina Boucher","raw_affiliation_strings":["Department of Computer and Information Science and Engineering, University of Florida, Gainesville, FL 32611, USA cboucher@cise.ufl.edu","Department of Computer and Information Science and Engineering, University of Florida, Gainesville, FL 32611, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science and Engineering, University of Florida, Gainesville, FL 32611, USA cboucher@cise.ufl.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Computer and Information Science and Engineering, University of Florida, Gainesville, FL 32611, USA","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5059638281"],"corresponding_institution_ids":["https://openalex.org/I33213144"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":19.4967,"has_fulltext":false,"cited_by_count":364,"citation_normalized_percentile":{"value":0.9953846,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"45","issue":"D1","first_page":"D574","last_page":"D580"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1313","display_name":"Molecular Medicine"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7116661667823792},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.7114872932434082},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5992989540100098},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5066245198249817},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4991464614868164},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4964295029640198},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.45810413360595703},{"id":"https://openalex.org/keywords/antibiotic-resistance","display_name":"Antibiotic resistance","score":0.41644641757011414},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32375895977020264},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.29682162404060364},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.28202006220817566},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22184783220291138},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18615368008613586}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7116661667823792},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.7114872932434082},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5992989540100098},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5066245198249817},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4991464614868164},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4964295029640198},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.45810413360595703},{"id":"https://openalex.org/C94665300","wikidata":"https://www.wikidata.org/wiki/Q63391344","display_name":"Antibiotic resistance","level":3,"score":0.41644641757011414},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32375895977020264},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.29682162404060364},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.28202006220817566},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22184783220291138},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18615368008613586},{"id":"https://openalex.org/C501593827","wikidata":"https://www.wikidata.org/wiki/Q12187","display_name":"Antibiotics","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004352","descriptor_name":"Drug Resistance, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004352","descriptor_name":"Drug Resistance, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004352","descriptor_name":"Drug Resistance, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064878","descriptor_name":"Web Browser","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkw1009","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1009","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:27899569","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27899569","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:nar:45/D1/D574","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/45/D1/D574","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:5210519","is_oa":true,"landing_page_url":"http://doi.org/10.1093/nar/gkw1009","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:redi.anii.org.uy:20.500.12381/2732","is_oa":true,"landing_page_url":"http://www.ainfo.inia.uy/consulta/busca?b=pc&id=57051&biblioteca=vazio&busca=57051&qFacets=57051","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"instacron:Instituto Nacional de Investigaci\u00f3n Agropecuaria","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/nar/gkw1009","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkw1009","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W651725268","https://openalex.org/W1496933752","https://openalex.org/W1964640602","https://openalex.org/W1967962707","https://openalex.org/W1988925586","https://openalex.org/W2028553878","https://openalex.org/W2029079541","https://openalex.org/W2034285706","https://openalex.org/W2037900484","https://openalex.org/W2045817362","https://openalex.org/W2050820276","https://openalex.org/W2072970694","https://openalex.org/W2096525273","https://openalex.org/W2099837668","https://openalex.org/W2103441770","https://openalex.org/W2104914423","https://openalex.org/W2108718991","https://openalex.org/W2114850508","https://openalex.org/W2118688136","https://openalex.org/W2124351063","https://openalex.org/W2131271579","https://openalex.org/W2134852597","https://openalex.org/W2136145671","https://openalex.org/W2139720036","https://openalex.org/W2150131459","https://openalex.org/W2151350595","https://openalex.org/W2152127318","https://openalex.org/W2161645441","https://openalex.org/W2162161835","https://openalex.org/W2168967909","https://openalex.org/W2171571559","https://openalex.org/W2295502830","https://openalex.org/W2296335794","https://openalex.org/W2434556008","https://openalex.org/W2547466953","https://openalex.org/W2682512625","https://openalex.org/W4230784961","https://openalex.org/W6697144307"],"related_works":["https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330","https://openalex.org/W3198631238","https://openalex.org/W4388282505","https://openalex.org/W3132280623"],"abstract_inverted_index":{"Antimicrobial":[0],"resistance":[1,18,43,93],"has":[2],"become":[3],"an":[4],"imminent":[5],"concern":[6],"for":[7,12,33,78,102,146,152,163],"public":[8],"health.":[9],"As":[10],"methods":[11],"detection":[13],"and":[14,23,95,110],"characterization":[15],"of":[16,36,51,64,76,105,114,155],"antimicrobial":[17,42,92],"move":[19],"from":[20],"targeted":[21],"culture":[22],"polymerase":[24],"chain":[25],"reaction":[26],"to":[27,47,82],"high":[28,106,156],"throughput":[29,107,157],"metagenomics,":[30],"appropriate":[31],"resources":[32],"the":[34,62,74,103,126,141,153,166],"analysis":[35,63,113,135,154],"large-scale":[37],"data":[38,159],"are":[39,45],"required.":[40],"Currently,":[41],"databases":[44],"tailored":[46],"smaller-scale,":[48],"functional":[49],"profiling":[50],"genes":[52],"using":[53],"highly":[54],"descriptive":[55],"annotations.":[56],"Such":[57],"characteristics":[58],"do":[59],"not":[60],"facilitate":[61],"large-scale,":[65],"ecological":[66],"sequence":[67,134],"datasets":[68],"such":[69],"as":[70,121],"those":[71],"produced":[72],"with":[73,165],"use":[75,164],"metagenomics":[77],"surveillance.":[79],"In":[80],"order":[81],"overcome":[83],"these":[84],"limitations,":[85],"we":[86,143],"present":[87],"MEGARes":[88,117,167],"(https://megares.meglab.org),":[89],"a":[90,100,122,148],"hand-curated":[91],"database":[94],"annotation":[96],"structure":[97],"that":[98,160],"provides":[99],"foundation":[101],"development":[104],"acyclical":[108],"classifiers":[109],"hierarchical":[111],"statistical":[112],"big":[115],"data.":[116],"can":[118,129],"be":[119,130],"browsed":[120],"stand-alone":[123],"resource":[124],"through":[125,137],"website":[127],"or":[128],"easily":[131],"integrated":[132],"into":[133],"pipelines":[136],"download.":[138],"Also":[139],"via":[140],"website,":[142],"provide":[144],"documentation":[145],"AmrPlusPlus,":[147],"user-friendly":[149],"Galaxy":[150],"pipeline":[151],"sequencing":[158],"is":[161],"pre-packaged":[162],"database.":[168]},"counts_by_year":[{"year":2026,"cited_by_count":13},{"year":2025,"cited_by_count":28},{"year":2024,"cited_by_count":36},{"year":2023,"cited_by_count":30},{"year":2022,"cited_by_count":34},{"year":2021,"cited_by_count":47},{"year":2020,"cited_by_count":62},{"year":2019,"cited_by_count":66},{"year":2018,"cited_by_count":28},{"year":2017,"cited_by_count":18}],"updated_date":"2026-05-05T08:41:31.759640","created_date":"2025-10-10T00:00:00"}