{"id":"https://openalex.org/W1954530082","doi":"https://doi.org/10.1093/nar/gkv555","title":"sRNAtoolbox: an integrated collection of small RNA research tools","display_name":"sRNAtoolbox: an integrated collection of small RNA research tools","publication_year":2015,"publication_date":"2015-05-27","ids":{"openalex":"https://openalex.org/W1954530082","doi":"https://doi.org/10.1093/nar/gkv555","mag":"1954530082","pmid":"https://pubmed.ncbi.nlm.nih.gov/26019179"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkv555","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv555","pdf_url":"https://academic.oup.com/nar/article-pdf/43/W1/W467/7476556/gkv555.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/43/W1/W467/7476556/gkv555.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108222722","display_name":"Antonio Rueda","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Antonio Rueda","raw_affiliation_strings":["Genomics and Bioinformatics Platform of Andalusia (GBPA), Edificio INSUR, Calle Albert Einstein, 41092-Sevilla, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics and Bioinformatics Platform of Andalusia (GBPA), Edificio INSUR, Calle Albert Einstein, 41092-Sevilla, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039320926","display_name":"Guillermo Barturen","orcid":"https://orcid.org/0000-0003-2103-1028"},"institutions":[{"id":"https://openalex.org/I4210142177","display_name":"Pfizer-University of Granada-Junta de Andaluc\u00eda Centre for Genomics and Oncological Research","ror":"https://ror.org/04hr99439","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210142177"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Guillermo Barturen","raw_affiliation_strings":["Centro de Gen\u00f3mica e Investigaciones Oncol\u00f3gicas, Pfizer-Universidad de Granada-Junta de Andaluc\u00eda, Granada 18016, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centro de Gen\u00f3mica e Investigaciones Oncol\u00f3gicas, Pfizer-Universidad de Granada-Junta de Andaluc\u00eda, Granada 18016, Spain","institution_ids":["https://openalex.org/I4210142177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069644962","display_name":"Ricardo Lebr\u00f3n","orcid":"https://orcid.org/0000-0002-5120-843X"},"institutions":[{"id":"https://openalex.org/I4210150145","display_name":"Parque Tecnol\u00f3gico de la Salud","ror":"https://ror.org/0503gyy63","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210150145"]},{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ricardo Lebr\u00f3n","raw_affiliation_strings":["Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","institution_ids":[]},{"raw_affiliation_string":"Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","institution_ids":["https://openalex.org/I4210150145"]},{"raw_affiliation_string":"Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013466832","display_name":"Cristina G\u00f3mez\u2010Mart\u00edn","orcid":"https://orcid.org/0000-0003-0866-4103"},"institutions":[{"id":"https://openalex.org/I4210150145","display_name":"Parque Tecnol\u00f3gico de la Salud","ror":"https://ror.org/0503gyy63","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210150145"]},{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Cristina G\u00f3mez-Mart\u00edn","raw_affiliation_strings":["Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","institution_ids":[]},{"raw_affiliation_string":"Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","institution_ids":["https://openalex.org/I4210150145"]},{"raw_affiliation_string":"Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022023349","display_name":"A. Marti \u0301\u2013Alganza","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150145","display_name":"Parque Tecnol\u00f3gico de la Salud","ror":"https://ror.org/0503gyy63","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210150145"]},{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"\u00c1ngel Alganza","raw_affiliation_strings":["Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain","Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","institution_ids":[]},{"raw_affiliation_string":"Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","institution_ids":["https://openalex.org/I4210150145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009966967","display_name":"Jos\u00e9 Luis Tejera Oliver","orcid":"https://orcid.org/0000-0003-0216-0393"},"institutions":[{"id":"https://openalex.org/I4210150145","display_name":"Parque Tecnol\u00f3gico de la Salud","ror":"https://ror.org/0503gyy63","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210150145"]},{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 L. Oliver","raw_affiliation_strings":["Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain","Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","institution_ids":[]},{"raw_affiliation_string":"Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","institution_ids":["https://openalex.org/I4210150145"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084745527","display_name":"Michael Hackenberg","orcid":"https://orcid.org/0000-0003-2248-3114"},"institutions":[{"id":"https://openalex.org/I4210150145","display_name":"Parque Tecnol\u00f3gico de la Salud","ror":"https://ror.org/0503gyy63","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210150145"]},{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Michael Hackenberg","raw_affiliation_strings":["Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain hackenberg@ugr.es","Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain hackenberg@ugr.es","institution_ids":[]},{"raw_affiliation_string":"Lab. de Bioinform\u00e1tica, Centro de Investigaci\u00f3n Biom\u00e9dica, PTS, Avda. del Conocimiento s/n, 18100-Granada, Spain","institution_ids":["https://openalex.org/I4210150145"]},{"raw_affiliation_string":"Dpto. de Gen\u00e9tica, Facultad de Ciencias, Universidad de Granada, Campus de Fuentenueva s/n, 18071-Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5108222722"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":10.6175,"has_fulltext":true,"cited_by_count":250,"citation_normalized_percentile":{"value":0.99049052,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"43","issue":"W1","first_page":"W467","last_page":"W473"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9008828997612},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6976249814033508},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.6816307306289673},{"id":"https://openalex.org/keywords/small-rna","display_name":"Small RNA","score":0.6395810842514038},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5326931476593018},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5104917287826538},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4570924639701843},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4544130563735962},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.4167090058326721},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3530294895172119}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9008828997612},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6976249814033508},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.6816307306289673},{"id":"https://openalex.org/C2779341050","wikidata":"https://www.wikidata.org/wiki/Q24287527","display_name":"Small RNA","level":4,"score":0.6395810842514038},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5326931476593018},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5104917287826538},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4570924639701843},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4544130563735962},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.4167090058326721},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3530294895172119},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D058727","descriptor_name":"RNA, Small Untranslated","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D058727","descriptor_name":"RNA, Small Untranslated","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D058727","descriptor_name":"RNA, Small Untranslated","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkv555","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv555","pdf_url":"https://academic.oup.com/nar/article-pdf/43/W1/W467/7476556/gkv555.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:26019179","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26019179","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pure.amsterdamumc.nl:openaire_cris_publications/8a3bceff-e706-40e4-9a4e-75e256d915e7","is_oa":true,"landing_page_url":"https://pure.amsterdamumc.nl/en/publications/8a3bceff-e706-40e4-9a4e-75e256d915e7","pdf_url":"https://pure.amsterdamumc.nl/ws/files/160684377/Srnatoolbox.pdf","source":{"id":"https://openalex.org/S7407055222","display_name":"Pure Amsterdam UMC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Rueda, A, Barturen, G, Lebr\u00f3n, R, G\u00f3mez-Mart\u00edn, C, Alganza, \u00c1, Oliver, J L & Hackenberg, M 2015, 'SRNAtoolbox : An integrated collection of small RNA research tools', Nucleic acids research, vol. 43, no. W1, pp. W467-W473. https://doi.org/10.1093/nar/gkv555","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.771.8920","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.771.8920","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/ee/ac/gkv555.PMC4489306.pdf","raw_type":"text"},{"id":"pmh:oai:digibug.ugr.es:10481/111323","is_oa":true,"landing_page_url":"https://hdl.handle.net/10481/111323","pdf_url":null,"source":{"id":"https://openalex.org/S4306400567","display_name":"Institutional Repository of the University of Granada (University of Granada)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173304897","host_organization_name":"Universidad de Granada","host_organization_lineage":["https://openalex.org/I173304897"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"AM"},{"id":"pmh:oai:europepmc.org:3458211","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4489306","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkv555","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv555","pdf_url":"https://academic.oup.com/nar/article-pdf/43/W1/W467/7476556/gkv555.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1954530082.pdf","grobid_xml":"https://content.openalex.org/works/W1954530082.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1540181427","https://openalex.org/W1550463251","https://openalex.org/W1972870065","https://openalex.org/W1975673380","https://openalex.org/W1989353561","https://openalex.org/W1995082021","https://openalex.org/W1997393600","https://openalex.org/W2009882651","https://openalex.org/W2015354890","https://openalex.org/W2031758284","https://openalex.org/W2040191060","https://openalex.org/W2056831129","https://openalex.org/W2075863097","https://openalex.org/W2082448279","https://openalex.org/W2087025873","https://openalex.org/W2100555999","https://openalex.org/W2103017472","https://openalex.org/W2112810020","https://openalex.org/W2114104545","https://openalex.org/W2117391818","https://openalex.org/W2122135986","https://openalex.org/W2124985265","https://openalex.org/W2125198788","https://openalex.org/W2126804125","https://openalex.org/W2128340149","https://openalex.org/W2128384671","https://openalex.org/W2130305733","https://openalex.org/W2130979840","https://openalex.org/W2132023025","https://openalex.org/W2133613866","https://openalex.org/W2137988707","https://openalex.org/W2142678478","https://openalex.org/W2144177541","https://openalex.org/W2147495091","https://openalex.org/W2149785901","https://openalex.org/W2150361201","https://openalex.org/W2151883199","https://openalex.org/W2152239989","https://openalex.org/W2158199935","https://openalex.org/W2161106528","https://openalex.org/W2165845089","https://openalex.org/W2167868554","https://openalex.org/W2169416219","https://openalex.org/W6647808099"],"related_works":["https://openalex.org/W2737319532","https://openalex.org/W3151405604","https://openalex.org/W2565797512","https://openalex.org/W2050308539","https://openalex.org/W2793648706","https://openalex.org/W2019096591","https://openalex.org/W3032012916","https://openalex.org/W2144339761","https://openalex.org/W4382982721","https://openalex.org/W2100652475"],"abstract_inverted_index":{"Small":[0],"RNA":[1,23],"research":[2],"is":[3,186],"a":[4,76,98,121,125],"rapidly":[5],"growing":[6],"field.":[7],"Apart":[8],"from":[9,108],"microRNAs,":[10,75],"which":[11],"are":[12,33,84],"important":[13,34],"regulators":[14],"of":[15,20,46,79,100,127,136,152,159,163,173],"gene":[16,116,130],"expression,":[17,114],"other":[18],"types":[19,83],"functional":[21],"small":[22,50,70],"molecules":[24],"have":[25],"been":[26],"reported":[27],"in":[28,35,55,69,73,120,166],"animals":[29],"and":[30,38,72,133,149],"plants.":[31],"MicroRNAs":[32],"host-microbe":[36],"interactions":[37],"parasite":[39,164],"microRNAs":[40,165],"might":[41],"modulate":[42],"the":[43,47,65,87,147,157,167,171],"innate":[44],"immunity":[45],"host.":[48],"Furthermore,":[49],"RNAs":[51],"can":[52,141,176],"be":[53,142,177],"detected":[54],"bodily":[56],"fluids":[57],"making":[58],"them":[59],"attractive":[60],"non-invasive":[61],"biomarker":[62],"candidates.":[63],"Given":[64],"general":[66],"broad":[67],"interest":[68],"RNAs,":[71],"particular":[74],"large":[77],"number":[78],"bioinformatics":[80],"aided":[81],"analysis":[82,132,151],"needed":[85],"by":[86,170],"scientific":[88],"community.":[89],"To":[90],"facilitate":[91],"integrated":[92],"sRNA":[93],"research,":[94],"we":[95],"developed":[96],"sRNAtoolbox,":[97],"set":[99],"independent":[101],"but":[102],"interconnected":[103],"tools":[104,140,185],"for":[105,146],"expression":[106],"profiling":[107],"high-throughput":[109],"sequencing":[110],"data,":[111],"consensus":[112,160],"differential":[113],"target":[115,161],"prediction,":[117],"visual":[118],"exploration":[119,148],"genome":[122],"context":[123],"as":[124],"function":[126],"read":[128],"length,":[129],"list":[131],"blast":[134],"search":[135],"unmapped":[137],"reads.":[138],"All":[139],"used":[143],"independently":[144],"or":[145],"downstream":[150],"sRNAbench":[153],"results.":[154],"Workflows":[155],"like":[156],"prediction":[158],"genes":[162],"host":[168],"followed":[169],"detection":[172],"enriched":[174],"pathways":[175],"easily":[178],"established.":[179],"The":[180],"web-interface":[181],"interconnecting":[182],"all":[183],"these":[184],"available":[187],"at":[188],"http://bioinfo5.ugr.es/srnatoolbox.":[189]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":23},{"year":2021,"cited_by_count":43},{"year":2020,"cited_by_count":19},{"year":2019,"cited_by_count":40},{"year":2018,"cited_by_count":34},{"year":2017,"cited_by_count":32},{"year":2016,"cited_by_count":22},{"year":2015,"cited_by_count":2}],"updated_date":"2026-05-08T15:41:06.802602","created_date":"2025-10-10T00:00:00"}
